Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G4130 Aethionema arabicum HOM05D000782 ORTHO05D000571 2.2e-38 161.8 79 100.0
Aa31LG3G4120 Aethionema arabicum HOM05D000782 ORTHO05D000571 7.3e-26 120.2 71 77.5
A03p36830 Brassica napus HOM05D000782 ORTHO05D000571 2.1e-25 118.6 79 70.9
BraA03t12846Z Brassica rapa HOM05D000782 ORTHO05D000571 2.1e-25 118.6 79 70.9
C03p44560 Brassica napus HOM05D000782 ORTHO05D000571 2.8e-25 118.2 79 70.9
Sp3g09330 Schrenkiella parvula HOM05D000782 ORTHO05D000571 6.2e-25 117.1 79 69.6
BcaC01g04149 Brassica carinata HOM05D000782 ORTHO05D000571 1.8e-24 115.5 79 69.6
BolC3t16723H Brassica oleracea HOM05D000782 ORTHO05D000571 1.8e-24 115.5 79 69.6
AL3G22552 Arabidopsis lyrata HOM05D000782 ORTHO05D000571 4.0e-24 114.4 79 65.8
AT3G10986 Arabidopsis thaliana HOM05D000782 ORTHO05D000571 5.2e-24 114.0 71 71.8
Thhalv10022413m.g Eutrema salsugineum HOM05D000782 ORTHO05D000571 5.2e-24 114.0 79 65.8
CARHR085580 Cardamine hirsuta HOM05D000782 ORTHO05D000571 6.9e-24 113.6 71 71.8
BcaB04g18616 Brassica carinata HOM05D000782 ORTHO05D000571 9.0e-24 113.2 71 73.2
Carub.0003s1028 Capsella rubella HOM05D000782 ORTHO05D000571 9.0e-24 113.2 79 67.1
Manes.07G136800 Manihot esculenta HOM05D000782 ORTHO05D000571 6.9e-16 87.0 70 57.1
Sabra08G0055600 Salix brachista HOM05D000782 ORTHO05D000571 9.0e-16 86.7 77 48.1
Sabra10G0139600 Salix brachista HOM05D000782 ORTHO05D000571 9.0e-16 86.7 71 54.9
Potri.010G182300 Populus trichocarpa HOM05D000782 ORTHO05D000571 1.2e-15 86.3 71 54.9
Potri.008G075100 Populus trichocarpa HOM05D000782 ORTHO05D000571 5.8e-15 84.0 77 45.5
Atru.chr12.129 Acer truncatum HOM05D000782 ORTHO05D000571 1.7e-14 82.4 71 49.3
Aa31LG10G11060 Aethionema arabicum HOM05D000782 ORTHO05D000571 1.7e-14 82.4 77 46.8
AL5G37500 Arabidopsis lyrata HOM05D000782 ORTHO05D000571 1.7e-14 82.4 70 51.4
Gohir.A10G240600 Gossypium hirsutum HOM05D000782 ORTHO05D000571 1.7e-14 82.4 71 47.9
Gorai.011G293100 Gossypium raimondii HOM05D000782 ORTHO05D000571 1.7e-14 82.4 71 47.9
Gohir.D10G252800 Gossypium hirsutum HOM05D000782 ORTHO05D000571 2.2e-14 82.0 71 47.9
COL.COLO4_25817 Corchorus olitorius HOM05D000782 ORTHO05D000571 2.9e-14 81.6 71 45.1
AT3G56180 Arabidopsis thaliana HOM05D000782 ORTHO05D000571 3.8e-14 81.3 70 50.0
THA.LOC104810132 Tarenaya hassleriana HOM05D000782 ORTHO05D000571 3.8e-14 81.3 70 50.0
CARHR166330 Cardamine hirsuta HOM05D000782 ORTHO05D000571 4.9e-14 80.9 70 51.4
COL.COLO4_03434 Corchorus olitorius HOM05D000782 ORTHO05D000571 4.9e-14 80.9 72 44.4
Gohir.A06G159800 Gossypium hirsutum HOM05D000782 ORTHO05D000571 6.4e-14 80.5 71 43.7
SHI28865 Sapria himalayana HOM05D000782 ORTHO05D000571 8.4e-14 80.1 72 48.6
Ciclev10032774m.g Citrus clementina HOM05D000782 ORTHO05D000571 1.1e-13 79.7 71 45.1
Gorai.010G193100 Gossypium raimondii HOM05D000782 ORTHO05D000571 1.1e-13 79.7 71 43.7
Thecc.10G008100 Theobroma cacao HOM05D000782 ORTHO05D000571 1.1e-13 79.7 71 45.1
Cpa.g.sc19.106 Carica papaya HOM05D000782 ORTHO05D000571 1.4e-13 79.3 77 45.5
Duzib128G0121 Durio zibethinus HOM05D000782 ORTHO05D000571 1.4e-13 79.3 71 42.3
Duzib106G0279 Durio zibethinus HOM05D000782 ORTHO05D000571 2.4e-13 78.6 74 41.9
Gohir.D06G165600 Gossypium hirsutum HOM05D000782 ORTHO05D000571 2.4e-13 78.6 71 42.3
Nn2g11070 Nelumbo nucifera HOM05D000782 ORTHO05D000571 2.4e-13 78.6 77 42.9
Carub.0005s2296 Capsella rubella HOM05D000782 ORTHO05D000571 3.2e-13 78.2 70 48.6
Sp5g06320 Schrenkiella parvula HOM05D000782 ORTHO05D000571 3.2e-13 78.2 70 47.1
BcaB02g08382 Brassica carinata HOM05D000782 ORTHO05D000571 4.2e-13 77.8 70 47.1
BcaB01g00022 Brassica carinata HOM05D000782 ORTHO05D000571 5.4e-13 77.4 70 47.1
A07p22810 Brassica napus HOM05D000782 ORTHO05D000571 7.1e-13 77.0 71 46.5
A04p03980 Brassica napus HOM05D000782 ORTHO05D000571 9.3e-13 76.6 70 45.7
BolC4t25175H Brassica oleracea HOM05D000782 ORTHO05D000571 9.3e-13 76.6 70 45.7
BraA04t16118Z Brassica rapa HOM05D000782 ORTHO05D000571 9.3e-13 76.6 70 45.7
Gohir.A05G304800 Gossypium hirsutum HOM05D000782 ORTHO05D000571 9.3e-13 76.6 74 40.5
Gohir.D05G303900 Gossypium hirsutum HOM05D000782 ORTHO05D000571 9.3e-13 76.6 74 40.5
Gorai.009G323200 Gossypium raimondii HOM05D000782 ORTHO05D000571 9.3e-13 76.6 74 40.5
BcaC08g44764 Brassica carinata HOM05D000782 ORTHO05D000571 1.2e-12 76.3 70 45.7
C06p23360 Brassica napus HOM05D000782 ORTHO05D000571 1.2e-12 76.3 70 45.7
BolC6t37510H Brassica oleracea HOM05D000782 ORTHO05D000571 1.2e-12 76.3 70 45.7
BcaB02g07666 Brassica carinata HOM05D000782 ORTHO05D000571 1.6e-12 75.9 70 48.6
BraA07t29946Z Brassica rapa HOM05D000782 ORTHO05D000571 2.1e-12 75.5 70 45.7
Duzib114G0053 Durio zibethinus HOM05D000782 ORTHO05D000571 2.1e-12 75.5 71 40.8
C08p31500 Brassica napus HOM05D000782 ORTHO05D000571 2.7e-12 75.1 70 45.7
BcaC02g09810 Brassica carinata HOM05D000782 ORTHO05D000571 3.5e-12 74.7 70 44.3
C04p36360 Brassica napus HOM05D000782 ORTHO05D000571 3.5e-12 74.7 70 44.3
Thhalv10006240m.g Eutrema salsugineum HOM05D000782 ORTHO05D000571 3.5e-12 74.7 70 44.3
A09p49150 Brassica napus HOM05D000782 ORTHO05D000571 4.6e-12 74.3 70 45.7
BraA09t40368Z Brassica rapa HOM05D000782 ORTHO05D000571 4.6e-12 74.3 70 45.7
Dinv10558 Davidia involucrata HOM05D000782 ORTHO05D000571 1.0e-11 73.2 71 43.7
BcaC07g39933 Brassica carinata HOM05D000782 ORTHO05D000571 1.3e-11 72.8 70 45.7
BolC8t50769H Brassica oleracea HOM05D000782 ORTHO05D000571 1.3e-11 72.8 70 45.7
C08p31490 Brassica napus HOM05D000782 ORTHO05D000571 1.8e-11 72.4 70 45.7
CANSAT56G4054 Cannabis sativa HOM05D000782 ORTHO05D000571 3.9e-11 71.2 78 41.0
Oeu017757.1 Olea europaea HOM05D000782 ORTHO05D000571 8.7e-11 70.1 77 40.3
Manes.10G008300 Manihot esculenta HOM05D000782 ORTHO05D000571 1.1e-10 69.7 76 43.4
Aqoxy4G02163 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 2.5e-10 68.6 74 43.2
BcaB05g25314 Brassica carinata HOM05D000730 ORTHO05D000578 4.3e-10 67.8 72 43.1
PSO339G0715 Papaver somniferum HOM05D000782 ORTHO05D000571 5.6e-10 67.4 74 36.5
Carub.0006s0589 Capsella rubella HOM05D000782 ORTHO05D000571 7.4e-10 67.0 73 42.5
COL.COLO4_25823 Corchorus olitorius HOM05D000782 ORTHO05D000571 9.6e-10 66.6 76 42.1
A10p28760 Brassica napus HOM05D000782 ORTHO05D000571 1.3e-09 66.2 73 41.1
Sc14g0005600 Simmondsia chinensis HOM05D000782 ORTHO05D000571 1.3e-09 66.2 62 45.2
Aqoxy4G02164 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 2.1e-09 65.5 74 43.2
PSO017G2627 Papaver somniferum HOM05D000782 ORTHO05D000571 6.2e-09 63.9 73 37.0
PSO170G5746 Papaver somniferum HOM05D000782 ORTHO05D000571 6.2e-09 63.9 73 37.0
Glyma.U031124 Glycine max HOM05D000782 ORTHO05D000571 1.1e-08 63.2 73 41.1
PSO339G1640 Papaver somniferum HOM05D000782 ORTHO05D000571 1.1e-08 63.2 74 36.5
PSO384G1515 Papaver somniferum HOM05D000782 ORTHO05D000571 2.4e-08 62.0 71 39.4
BcaNung04210 Brassica carinata HOM05D000782 ORTHO05D000571 3.1e-08 61.6 72 38.9
C09p69090 Brassica napus HOM05D000782 ORTHO05D000571 3.1e-08 61.6 72 38.9
BolC9t59652H Brassica oleracea HOM05D000782 ORTHO05D000571 3.1e-08 61.6 72 38.9
BraA10t44923Z Brassica rapa HOM05D000782 ORTHO05D000571 3.1e-08 61.6 73 38.4
Peaxi162Scf00284g00121 Petunia axillaris HOM05D000782 ORTHO05D000571 4.0e-08 61.2 75 38.7
Cc06_g00620 Coffea canephora HOM05D000782 ORTHO05D000571 5.3e-08 60.8 74 37.8
Nn2g11064 Nelumbo nucifera HOM05D000782 ORTHO05D000571 5.3e-08 60.8 74 36.5
Solyc06g050810.3 Solanum lycopersicum HOM05D000782 ORTHO05D000571 5.3e-08 60.8 77 39.0
Aqoxy3G02343 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 6.9e-08 60.5 74 36.5
VMungo0647G2326 Vigna mungo HOM05D000782 ORTHO05D000571 6.9e-08 60.5 72 36.1
Aqoxy4G00264 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 9.0e-08 60.1 74 33.8
arahy.Tifrunner.gnm1.ann1.6VAW0P Arachis hypogaea HOM05D000782 ORTHO05D000571 9.0e-08 60.1 68 42.6
CAN.G738.2 Capsicum annuum HOM05D000782 ORTHO05D000571 9.0e-08 60.1 74 31.1
Peaxi162Scf00009g00812 Petunia axillaris HOM05D000782 ORTHO05D000571 9.0e-08 60.1 74 32.4
Lj2A64T52 Lonicera japonica HOM05D000782 ORTHO05D000571 1.2e-07 59.7 73 37.0
PSO170G1081 Papaver somniferum HOM05D000782 ORTHO05D000571 1.2e-07 59.7 71 35.2
Peaxi162Scf00009g00813 Petunia axillaris HOM05D000782 ORTHO05D000571 1.2e-07 59.7 74 32.4
Peaxi162Scf01691g00011 Petunia axillaris HOM05D000782 ORTHO05D000571 1.2e-07 59.7 74 35.1
Phvul.008G219000 Phaseolus vulgaris HOM05D000782 ORTHO05D000571 1.2e-07 59.7 73 38.4
SEGI_32147 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 1.2e-07 59.7 73 39.7
Sopen06g016490 Solanum pennellii HOM05D000782 ORTHO05D000571 1.2e-07 59.7 77 39.0
TAR623G1064 Trochodendron aralioides HOM05D000782 ORTHO05D000571 1.2e-07 59.7 74 36.5
Prupe.6G287500 Prunus persica HOM05D000782 ORTHO05D000571 1.5e-07 59.3 74 36.5
TAR623G1291 Trochodendron aralioides HOM05D000782 ORTHO05D000571 2.0e-07 58.9 74 35.1
vmacro08921 Vaccinium macrocarpon HOM05D000782 ORTHO05D000571 2.0e-07 58.9 74 36.5
vmacro20342 Vaccinium macrocarpon HOM05D000782 ORTHO05D000571 2.0e-07 58.9 75 30.7
Dinv25291 Davidia involucrata HOM05D000782 ORTHO05D000571 2.6e-07 58.5 74 32.4
Atru.chr12.135 Acer truncatum HOM05D000782 ORTHO05D000571 3.4e-07 58.2 71 39.4
Aqoxy4G00262 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 3.4e-07 58.2 74 33.8
Ca_07723_v3 Cicer arietinum L. HOM05D000782 ORTHO05D000571 3.4e-07 58.2 66 36.4
Ca_07729_v3 Cicer arietinum L. HOM05D000782 ORTHO05D000571 3.4e-07 58.2 66 36.4
Ca_08083_v3 Cicer arietinum L. HOM05D000072 ORTHO05D000571 3.4e-07 58.2 66 36.4
Phvul.008G089000 Phaseolus vulgaris HOM05D000782 ORTHO05D000571 3.4e-07 58.2 73 35.6
Psat0s4838g0040 Pisum sativum HOM05D000782 ORTHO05D000571 3.4e-07 58.2 66 36.4
PGSC0003DMG400029151 Solanum tuberosum HOM05D000782 ORTHO05D000571 3.4e-07 58.2 77 36.4
GSVIVG01030235001 Vitis vinifera HOM05D000782 ORTHO05D000571 3.4e-07 58.2 73 35.6
CAN.G508.30 Capsicum annuum HOM05D000782 ORTHO05D000571 4.5e-07 57.8 74 31.1
DCAR_028901 Daucus carota HOM05D000782 ORTHO05D000571 4.5e-07 57.8 73 39.7
Dinv35438 Davidia involucrata HOM05D000782 ORTHO05D000571 4.5e-07 57.8 74 33.8
FAN05G5695 Fragaria x ananassa HOM05D000782 ORTHO05D000571 4.5e-07 57.8 73 34.2
SEGI_07804 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 4.5e-07 57.8 73 39.7
MSTRG.5525 Avicennia marina HOM05D000782 ORTHO05D000571 5.8e-07 57.4 74 33.8
FAN05G0058 Fragaria x ananassa HOM05D000782 ORTHO05D000571 5.8e-07 57.4 73 34.2
Gohir.A05G332400 Gossypium hirsutum HOM05D000782 ORTHO05D000571 5.8e-07 57.4 76 34.2
Gohir.D04G071100 Gossypium hirsutum HOM05D000782 ORTHO05D000571 5.8e-07 57.4 76 34.2
Gorai.012G080000 Gossypium raimondii HOM05D000782 ORTHO05D000571 5.8e-07 57.4 76 34.2
Medtr7g072120 Medicago truncatula HOM05D000782 ORTHO05D000571 5.8e-07 57.4 66 36.4
Medtr7g072140 Medicago truncatula HOM05D000782 ORTHO05D000571 5.8e-07 57.4 64 37.5
Nitab4.5_0004057g0010 Nicotiana tabacum HOM05D000782 ORTHO05D000571 5.8e-07 57.4 74 32.4
Phvul.010G061200 Phaseolus vulgaris HOM05D000782 ORTHO05D000571 5.8e-07 57.4 73 32.9
Psat1g155400 Pisum sativum HOM05D000782 ORTHO05D000571 7.6e-07 57.0 66 36.4
Psat3g121480 Pisum sativum HOM05D000782 ORTHO05D000571 7.6e-07 57.0 72 33.3
Prupe.6G287800 Prunus persica HOM05D000782 ORTHO05D000571 7.6e-07 57.0 74 31.1
HPP92_026131 Vanilla planifolia HOM05D000782 ORTHO05D000571 7.6e-07 57.0 73 39.7
CANSAT35G0618 Cannabis sativa HOM05D000782 ORTHO05D000571 9.9e-07 56.6 74 27.0
CAN.G738.4 Capsicum annuum HOM05D000782 ORTHO05D000571 9.9e-07 56.6 74 29.7
DCAR_028905 Daucus carota HOM05D000782 ORTHO05D000571 9.9e-07 56.6 73 37.0
FAN09G0140 Fragaria x ananassa HOM05D000782 ORTHO05D000571 9.9e-07 56.6 73 34.2
Glyma.18G209800 Glycine max HOM05D000782 ORTHO05D000571 9.9e-07 56.6 73 34.2
Lj1g0027513 Lotus japonicus HOM05D000782 ORTHO05D000571 9.9e-07 56.6 67 34.3
MD04G1169400 Malus domestica HOM05D000782 ORTHO05D000571 9.9e-07 56.6 74 33.8
vmacro20341 Vaccinium macrocarpon HOM05D000782 ORTHO05D000571 9.9e-07 56.6 74 29.7
VMungo0925G0001 Vigna mungo HOM05D000782 ORTHO05D000571 9.9e-07 56.6 73 34.2
FvH4_6g10350 Fragaria vesca HOM05D000782 ORTHO05D000571 1.3e-06 56.2 73 34.2
FAN14G2230 Fragaria x ananassa HOM05D000782 ORTHO05D000571 1.3e-06 56.2 73 34.2
TPR.G35292 Trifolium pratense HOM05D000782 ORTHO05D000571 1.3e-06 56.2 72 33.3
Aa31LG1G23400 Aethionema arabicum HOM05D000782 ORTHO05D000571 1.7e-06 55.8 72 36.1
DCAR_015455 Daucus carota HOM05D000782 ORTHO05D000571 1.7e-06 55.8 73 38.4
RcHm_v2.0_Chr3g0461171 Rosa chinensis HOM05D000782 ORTHO05D000571 1.7e-06 55.8 73 34.2
AT5G01750 Arabidopsis thaliana HOM05D000782 ORTHO05D000571 2.2e-06 55.5 71 32.4
Nitab4.5_0000047g0040 Nicotiana tabacum HOM05D000782 ORTHO05D000571 2.2e-06 55.5 70 32.9
QL07p033303 Quercus lobata HOM05D000782 ORTHO05D000571 2.2e-06 55.5 73 32.9
Zm00001eb303760 Zea mays HOM05D000782 ORTHO05D000571 2.2e-06 55.5 70 35.7
Thhalv10026191m.g Eutrema salsugineum HOM05D000782 ORTHO05D000571 2.9e-06 55.1 75 30.7
HPP92_022852 Vanilla planifolia HOM05D000782 ORTHO05D000571 2.9e-06 55.1 72 38.9
DCAR_028904 Daucus carota HOM05D000782 ORTHO05D000571 3.8e-06 54.7 73 37.0
Duzib268G1814 Durio zibethinus HOM05D000782 ORTHO05D000571 3.8e-06 54.7 71 33.8
Lalb_Chr03g0043661 Lupinus albus HOM05D000782 ORTHO05D000571 3.8e-06 54.7 73 31.5
MD12G1183400 Malus domestica HOM05D000782 ORTHO05D000571 3.8e-06 54.7 74 29.7
THA.LOC104823312 Tarenaya hassleriana HOM05D000782 ORTHO05D000571 3.8e-06 54.7 71 32.4
Cfa017081 Carpinus fangiana HOM05D000744 ORTHO05D000332 4.9e-06 54.3 74 32.4
Nitab4.5_0000263g0120 Nicotiana tabacum HOM05D000782 ORTHO05D000571 4.9e-06 54.3 75 37.3
Cfa017082 Carpinus fangiana HOM05D000782 ORTHO05D000571 6.4e-06 53.9 74 33.8
Migut.J00078 Erythranthe guttata HOM05D000782 ORTHO05D000571 6.4e-06 53.9 74 32.4
arahy.Tifrunner.gnm1.ann1.6B6LV9 Arachis hypogaea HOM05D000782 ORTHO05D000571 8.4e-06 53.5 73 34.2
Lj3g0018258 Lotus japonicus HOM05D000782 ORTHO05D000571 8.4e-06 53.5 72 29.2
Manes.10G006900 Manihot esculenta HOM05D000782 ORTHO05D000571 8.4e-06 53.5 57 45.6
Thecc.10G007400 Theobroma cacao HOM05D000782 ORTHO05D000571 8.4e-06 53.5 64 39.1


User provided reference genes

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