Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G3850 Aethionema arabicum HOM05D004391 ORTHO05D005193 8.5e-37 156.4 73 100.0
BraA01t04219Z Brassica rapa HOM05D004391 ORTHO05D005193 9.4e-36 152.9 73 97.3
Thhalv10021877m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 9.4e-36 152.9 73 97.3
Sp3g09180 Schrenkiella parvula HOM05D004391 ORTHO05D005193 2.7e-35 151.4 73 95.9
A05p38380 Brassica napus HOM05D004391 ORTHO05D005193 8.0e-35 149.8 73 95.9
C05p57280 Brassica napus HOM05D004391 ORTHO05D005193 8.0e-35 149.8 73 95.9
BolC5t34384H Brassica oleracea HOM05D004391 ORTHO05D005193 8.0e-35 149.8 73 95.9
BraA05t22629Z Brassica rapa HOM05D004391 ORTHO05D005193 8.0e-35 149.8 73 95.9
AT3G10860 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 3.0e-34 147.9 73 93.2
Carub.0003s1010 Capsella rubella HOM05D004391 ORTHO05D005193 3.0e-34 147.9 73 93.2
BolC1t05350H Brassica oleracea HOM05D004391 ORTHO05D005193 4.0e-34 147.5 73 95.9
CARHR085430 Cardamine hirsuta HOM05D004391 ORTHO05D005193 4.0e-34 147.5 73 91.8
THA.LOC104823167 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 5.2e-34 147.1 73 91.8
AL3G22380 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 1.5e-33 145.6 73 91.8
THA.LOC104816504 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 4.4e-33 144.1 73 89.0
THA.LOC109117202 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 7.5e-33 143.3 73 87.7
Aa31LG11G6460 Aethionema arabicum HOM05D004391 ORTHO05D005193 6.3e-32 140.2 73 90.4
Thhalv10015197m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 8.3e-32 139.8 73 89.0
Sp6g37680 Schrenkiella parvula HOM05D004391 ORTHO05D005193 2.4e-31 138.3 73 87.7
CARHR207860 Cardamine hirsuta HOM05D004391 ORTHO05D005193 3.1e-31 137.9 73 86.3
Peaxi162Scf00131g10129 Petunia axillaris HOM05D004391 ORTHO05D005193 4.1e-31 137.5 73 86.3
Nitab4.5_0000105g0300 Nicotiana tabacum HOM05D004391 ORTHO05D005193 5.3e-31 137.1 73 86.3
AL6G15270 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 7.0e-31 136.7 73 87.7
AT5G05370 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 7.0e-31 136.7 73 87.7
Sp6g37450 Schrenkiella parvula HOM05D004391 ORTHO05D005193 9.1e-31 136.3 73 86.3
Thhalv10015196m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 1.2e-30 136.0 73 86.3
Nitab4.5_0003194g0030 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.6e-30 135.6 73 84.9
BcaC06g32250 Brassica carinata HOM05D004391 ORTHO05D005193 2.0e-30 135.2 73 84.9
A10p30830 Brassica napus HOM05D004391 ORTHO05D005193 2.0e-30 135.2 73 84.9
C09p71330 Brassica napus HOM05D004391 ORTHO05D005193 2.0e-30 135.2 73 84.9
BolC9t59895H Brassica oleracea HOM05D004391 ORTHO05D005193 2.0e-30 135.2 73 84.9
BraA10t45125Z Brassica rapa HOM05D004391 ORTHO05D005193 2.0e-30 135.2 73 84.9
Solyc06g082680.4 Solanum lycopersicum HOM05D004391 ORTHO05D005193 2.0e-30 135.2 73 84.9
Sopen06g034070 Solanum pennellii HOM05D004391 ORTHO05D005193 2.0e-30 135.2 73 84.9
Aa31LG3G4110 Aethionema arabicum HOM05D004391 ORTHO05D005193 2.7e-30 134.8 94 74.5
Carub.0006s0430 Capsella rubella HOM05D004391 ORTHO05D005193 2.7e-30 134.8 73 84.9
A03p02270 Brassica napus HOM05D004391 ORTHO05D005193 3.5e-30 134.4 73 84.9
Nitab4.5_0000311g0070 Nicotiana tabacum HOM05D004391 ORTHO05D005193 3.5e-30 134.4 73 83.6
PGSC0003DMG400030477 Solanum tuberosum HOM05D004391 ORTHO05D005193 4.5e-30 134.0 73 83.6
Peaxi162Scf00455g00003 Petunia axillaris HOM05D004391 ORTHO05D005193 5.9e-30 133.7 73 84.9
BcaB01g05713 Brassica carinata HOM05D004391 ORTHO05D005193 7.7e-30 133.3 73 84.9
CiPaw.05G185700 Carya illinoinensis HOM05D004391 ORTHO05D005193 7.7e-30 133.3 73 80.8
Potri.019G132000 Populus trichocarpa HOM05D004391 ORTHO05D005193 7.7e-30 133.3 73 83.6
Cc01_g15470 Coffea canephora HOM05D004391 ORTHO05D005193 1.3e-29 132.5 73 82.2
Manes.18G125100 Manihot esculenta HOM05D004391 ORTHO05D005193 1.3e-29 132.5 73 82.2
Cfa009172 Carpinus fangiana HOM05D004391 ORTHO05D005193 2.9e-29 131.3 73 80.8
Solyc06g007540.3 Solanum lycopersicum HOM05D004391 ORTHO05D005193 2.9e-29 131.3 73 82.2
Sopen06g002450 Solanum pennellii HOM05D004391 ORTHO05D005193 2.9e-29 131.3 73 82.2
Oeu025053.1 Olea europaea HOM05D004391 ORTHO05D005193 3.8e-29 131.0 73 79.5
Nn5g27585 Nelumbo nucifera HOM05D004391 ORTHO05D005193 6.5e-29 130.2 73 78.1
PGR142G4161 Punica granatum HOM05D004391 ORTHO05D005193 8.5e-29 129.8 73 78.1
CAN.G874.64 Capsicum annuum HOM05D004391 ORTHO05D005193 1.1e-28 129.4 73 80.8
Eucgr.G03166 Eucalyptus grandis HOM05D004391 ORTHO05D005193 1.1e-28 129.4 73 78.1
Prupe.6G038800 Prunus persica HOM05D004391 ORTHO05D005193 1.1e-28 129.4 73 79.5
CSS0036971 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 2.5e-28 128.3 73 78.1
Gohir.A05G404700 Gossypium hirsutum HOM05D004391 ORTHO05D005193 3.2e-28 127.9 73 79.5
Gohir.D04G011000 Gossypium hirsutum HOM05D004391 ORTHO05D005193 4.2e-28 127.5 73 79.5
Gohir.D13G008800 Gossypium hirsutum HOM05D004391 ORTHO05D005193 4.2e-28 127.5 73 79.5
Sc15g0002370 Simmondsia chinensis HOM05D004391 ORTHO05D005193 4.2e-28 127.5 73 76.7
CANSAT80G1344 Cannabis sativa HOM05D004391 ORTHO05D005193 5.5e-28 127.1 71 78.9
CAN.G181.27 Capsicum annuum HOM05D004391 ORTHO05D005193 5.5e-28 127.1 73 80.8
TWI09G0083 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 7.2e-28 126.7 73 75.3
TWI53G1180 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 7.2e-28 126.7 73 76.7
CSS0038074 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 9.4e-28 126.3 73 76.7
Duzib114G0048 Durio zibethinus HOM05D004391 ORTHO05D005193 9.4e-28 126.3 73 76.7
RcHm_v2.0_Chr5g0073771 Rosa chinensis HOM05D004391 ORTHO05D005193 9.4e-28 126.3 73 78.1
MD03G1047800 Malus domestica HOM05D004391 ORTHO05D005193 1.2e-27 125.9 73 78.1
MD13G1094500 Malus domestica HOM05D004391 ORTHO05D005193 1.2e-27 125.9 73 78.1
Os06g0175900 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 1.2e-27 125.9 73 76.7
Os06g0177000 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 1.2e-27 125.9 73 76.7
RcHm_v2.0_Chr4g0441891 Rosa chinensis HOM05D004391 ORTHO05D005193 1.2e-27 125.9 73 75.3
Zm00001eb375180 Zea mays HOM05D004391 ORTHO05D005193 1.2e-27 125.9 73 78.1
Gohir.A13G008200 Gossypium hirsutum HOM05D004391 ORTHO05D005193 1.6e-27 125.6 73 78.1
Nn5g26793 Nelumbo nucifera HOM05D004391 ORTHO05D005193 1.6e-27 125.6 73 75.3
Cpa.g.sc2.267 Carica papaya HOM05D004391 ORTHO05D005193 2.1e-27 125.2 73 76.7
TAR369G0568 Trochodendron aralioides HOM05D004391 ORTHO05D005193 2.7e-27 124.8 73 76.7
Dinv12291 Davidia involucrata HOM05D000139 ORTHO05D000103 3.6e-27 124.4 72 77.8
Gorai.012G013200 Gossypium raimondii HOM05D004391 ORTHO05D005193 3.6e-27 124.4 70 80.0
MD16G1095600 Malus domestica HOM05D004391 ORTHO05D005193 3.6e-27 124.4 73 76.7
Duzib128G1816 Durio zibethinus HOM05D004391 ORTHO05D005193 4.7e-27 124.0 73 75.3
GSVIVG01024232001 Vitis vinifera HOM05D004391 ORTHO05D005193 4.7e-27 124.0 73 74.0
Haze_12207 Corylus avellana HOM05D004391 ORTHO05D005193 6.1e-27 123.6 73 76.7
ClCG08G017940 Citrullus lanatus HOM05D004391 ORTHO05D005193 8.0e-27 123.2 73 74.0
unitig_747.g21439 Utricularia gibba HOM05D001024 ORTHO05D000878 1.0e-26 122.9 73 74.0
TAR633G0676 Trochodendron aralioides HOM05D004391 ORTHO05D005193 1.4e-26 122.5 70 78.6
GSVIVG01024535001 Vitis vinifera HOM05D004391 ORTHO05D005193 1.4e-26 122.5 73 72.6
TPR.G7542 Trifolium pratense HOM05D004391 ORTHO05D005193 1.8e-26 122.1 73 76.7
FvH4_3g40960 Fragaria vesca HOM05D004391 ORTHO05D005193 2.3e-26 121.7 73 75.3
FAN11G0346 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.3e-26 121.7 73 75.3
FAN16G3113 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.3e-26 121.7 73 75.3
Ciclev10033444m.g Citrus clementina HOM05D004391 ORTHO05D005193 3.0e-26 121.3 73 74.0
Medtr5g075690 Medicago truncatula HOM05D004391 ORTHO05D005193 3.0e-26 121.3 70 80.0
Glyma.02G237700 Glycine max HOM05D004391 ORTHO05D005193 4.0e-26 120.9 73 74.0
MELO3C010670.2 Cucumis melo HOM05D004391 ORTHO05D005193 5.2e-26 120.6 73 71.2
Glyma.14G206700 Glycine max HOM05D004391 ORTHO05D005193 5.2e-26 120.6 73 74.0
Prupe.1G250900 Prunus persica HOM05D004391 ORTHO05D005193 5.2e-26 120.6 73 72.6
Ciclev10010097m.g Citrus clementina HOM05D004391 ORTHO05D005193 6.8e-26 120.2 73 72.6
Phvul.008G244100 Phaseolus vulgaris HOM05D004391 ORTHO05D005193 6.8e-26 120.2 73 74.0
COL.COLO4_19488 Corchorus olitorius HOM05D004391 ORTHO05D005193 8.8e-26 119.8 73 75.3
Hma1.2p1_0170F.1_g075340 Hydrangea macrophylla HOM05D004391 ORTHO05D005193 8.8e-26 119.8 73 71.2
HPP92_003137 Vanilla planifolia HOM05D004391 ORTHO05D005193 1.2e-25 119.4 73 72.6
Ah.05g177740 Amaranthus hybridus HOM05D004391 ORTHO05D005193 2.0e-25 118.6 73 72.6
FvH4_4g32870 Fragaria vesca HOM05D004391 ORTHO05D005193 2.0e-25 118.6 73 71.2
FAN12G3281 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.0e-25 118.6 73 71.2
FAN07G1869 Fragaria x ananassa HOM05D004391 ORTHO05D005193 3.4e-25 117.9 73 71.2
FAN17G0118 Fragaria x ananassa HOM05D004391 ORTHO05D005193 3.4e-25 117.9 73 71.2
FAN22G1549 Fragaria x ananassa HOM05D004391 ORTHO05D005193 3.4e-25 117.9 73 71.2
Ciclev10013576m.g Citrus clementina HOM05D004391 ORTHO05D005193 5.7e-25 117.1 73 71.2
LjContig00141g0006354 Lotus japonicus HOM05D004391 ORTHO05D005193 5.7e-25 117.1 73 74.0
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 7.5e-25 116.7 70 72.9
Lalb_Chr10g0103971 Lupinus albus HOM05D004391 ORTHO05D005193 9.8e-25 116.3 73 71.2
Lalb_Chr04g0251641 Lupinus albus HOM05D004391 ORTHO05D005193 1.7e-24 115.5 73 69.9
QL03p059558 Quercus lobata HOM05D004391 ORTHO05D005193 1.7e-24 115.5 94 59.6
arahy.Tifrunner.gnm1.ann1.M2MMUV Arachis hypogaea HOM05D004391 ORTHO05D005193 2.2e-24 115.2 73 71.2
Thecc.10G186500 Theobroma cacao HOM05D004391 ORTHO05D005193 2.2e-24 115.2 73 68.5
HPP92_000080 Vanilla planifolia HOM05D004391 ORTHO05D005193 2.2e-24 115.2 71 71.8
Migut.D00804 Erythranthe guttata HOM05D004391 ORTHO05D005193 2.8e-24 114.8 73 71.2
FAN21G2439 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.8e-24 114.8 72 72.2
Sed0004860 Sechium edule HOM05D004391 ORTHO05D005193 2.8e-24 114.8 73 71.2
BcaB04g21171 Brassica carinata HOM05D004391 ORTHO05D005193 6.3e-24 113.6 52 96.2
AUR62013781 Chenopodium quinoa HOM05D004391 ORTHO05D005193 8.3e-24 113.2 73 69.9
Nitab4.5_0002167g0040 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.8e-23 112.1 63 85.7
THA.LOC104823179 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.8e-23 112.1 56 91.1
Nitab4.5_0002902g0130 Nicotiana tabacum HOM05D004391 ORTHO05D005193 2.4e-23 111.7 56 91.1
AUR62023375 Chenopodium quinoa HOM05D004391 ORTHO05D005193 5.4e-23 110.5 73 68.5
PGSC0003DMG400020649 Solanum tuberosum HOM05D004391 ORTHO05D005193 5.4e-23 110.5 56 89.3
Aqoxy2G00689 Aquilegia oxysepala HOM05D004391 ORTHO05D005193 9.1e-23 109.8 73 69.9
Lsat_1_v5_gn_5_177220 Lactuca sativa HOM05D004391 ORTHO05D005193 1.6e-22 109.0 73 65.8
HanXRQChr05g0158631 Helianthus annuus HOM05D004391 ORTHO05D005193 2.0e-22 108.6 73 65.8
ECA236G4577 Erigeron canadensis HOM05D004391 ORTHO05D005193 2.7e-22 108.2 73 68.5
ECA248G3374 Erigeron canadensis HOM05D004391 ORTHO05D005193 2.7e-22 108.2 73 65.8
Potri.013G159700 Populus trichocarpa HOM05D004391 ORTHO05D005193 5.9e-22 107.1 56 85.7
CBR_g1035 Chara braunii HOM05D004391 ORTHO05D005193 7.7e-22 106.7 73 64.4
HanXRQChr10g0292911 Helianthus annuus HOM05D004391 ORTHO05D005193 7.7e-22 106.7 73 65.8
vmacro02862 Vaccinium macrocarpon HOM05D004391 ORTHO05D005193 7.7e-22 106.7 58 81.0
Zm00001eb281780 Zea mays HOM05D004391 ORTHO05D005193 1.3e-21 105.9 56 83.9
FvH4_4g07960 Fragaria vesca HOM05D004391 ORTHO05D005193 2.9e-21 104.8 73 63.0
Gorai.013G009600 Gossypium raimondii HOM05D004391 ORTHO05D005193 2.9e-21 104.8 56 83.9
CsaV3_2G024700 Cucumis sativus L. HOM05D004391 ORTHO05D005193 1.1e-20 102.8 58 77.6
AagrBONN_evm.TU.Sc2ySwM_362.2485 Anthoceros agrestis HOM05D004391 ORTHO05D005193 1.5e-20 102.4 73 61.6
SalBow3G4275 Salvia bowleyana HOM05D004391 ORTHO05D005193 1.5e-20 102.4 103 52.4
Pp3c7_21160 Physcomitrium patens HOM05D004391 ORTHO05D005193 5.5e-20 100.5 73 58.9
VMungo0647G0523 Vigna mungo HOM05D004391 ORTHO05D005193 1.2e-19 99.4 56 80.4
Pp3c11_2590 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.6e-19 99.0 73 57.5
Pp3c1_1570 Physcomitrium patens HOM05D004391 ORTHO05D005193 2.1e-19 98.6 73 57.5
Lsat_1_v5_gn_9_13380 Lactuca sativa HOM05D000838 ORTHO05D000656 1.4e-18 95.9 56 78.6
BolC2t06197H Brassica oleracea HOM05D004391 ORTHO05D005193 1.8e-18 95.5 69 71.0
SHI19278 Sapria himalayana HOM05D004391 ORTHO05D005193 5.2e-18 94.0 56 73.2
SGA_v2.0_scaffold122G33334 Striga asiatica HOM05D004391 ORTHO05D005193 1.5e-17 92.4 56 75.0
C02p02320 Brassica napus HOM05D004391 ORTHO05D005193 9.8e-17 89.7 66 69.7
Lsat_1_v5_gn_9_13340 Lactuca sativa HOM05D004391 ORTHO05D005193 2.2e-16 88.6 52 78.8
Lsat_1_v5_gn_8_98921 Lactuca sativa HOM05D004391 ORTHO05D005193 6.3e-16 87.0 56 71.4
Lsat_1_v5_gn_8_98901 Lactuca sativa HOM05D004391 ORTHO05D005193 8.3e-16 86.7 52 78.8
SGA_v2.0_scaffold129G34161 Striga asiatica HOM05D004391 ORTHO05D005193 1.8e-15 85.5 53 73.6
Mapoly0022s0089 Marchantia polymorpha HOM05D004391 ORTHO05D005193 1.2e-14 82.8 65 52.3
Pp3c13_7360 Physcomitrium patens HOM05D004391 ORTHO05D005193 5.0e-13 77.4 71 49.3
BcaB05g21720 Brassica carinata HOM05D004391 ORTHO05D005193 6.6e-13 77.0 52 69.2
SEGI_31881 Sequoiadendron giganteum HOM05D004391 ORTHO05D005193 8.6e-13 76.6 54 55.6
SMO117G0077 Selaginella moellendorffii HOM05D004391 ORTHO05D005193 4.3e-12 74.3 66 51.5
Mapoly0036s0032 Marchantia polymorpha HOM05D004391 ORTHO05D005193 2.1e-11 72.0 73 49.3
DCAR_018583 Daucus carota HOM05D004391 ORTHO05D005193 3.6e-11 71.2 56 51.8
Oeu007160.1 Olea europaea HOM05D004391 ORTHO05D005193 8.0e-11 70.1 55 61.8
EL10Ac1g00726 Beta vulgaris HOM05D004391 ORTHO05D005193 5.2e-10 67.4 38 78.9
DCAR_023068 Daucus carota HOM05D004391 ORTHO05D005193 5.8e-09 63.9 74 44.6
PRCOL_00006067 Prasinoderma coloniale HOM05D004391 ORTHO05D005193 1.1e-07 59.7 73 38.4
MCO15G410 Micromonas commoda HOM05D004391 ORTHO05D005193 9.2e-07 56.6 74 40.5


User provided reference genes

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