Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 3.0e-75 285.0 140 100.0
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 7.4e-21 104.4 61 83.6
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 9.6e-13 77.4 61 63.9
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 2.8e-12 75.9 61 63.9
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 8.2e-12 74.3 60 61.7
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 1.8e-11 73.2 61 59.0
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 1.5e-10 70.1 131 39.7
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 5.9e-10 68.2 61 57.4
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 7.6e-10 67.8 74 50.0
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 7.6e-10 67.8 65 53.8
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 1.3e-09 67.0 82 47.6
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 1.3e-09 67.0 60 56.7
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 1.7e-09 66.6 59 55.9
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.7e-09 66.6 61 57.4
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 1.7e-09 66.6 63 55.6
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 2.2e-09 66.2 57 61.4
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 2.2e-09 66.2 61 55.7
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 2.9e-09 65.9 72 48.6
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 2.9e-09 65.9 60 56.7
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 3.8e-09 65.5 134 35.8
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 3.8e-09 65.5 134 35.8
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 3.8e-09 65.5 57 57.9
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 5.0e-09 65.1 74 47.3
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 5.0e-09 65.1 55 60.0
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 5.0e-09 65.1 55 60.0
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 5.0e-09 65.1 58 56.9
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 5.0e-09 65.1 63 54.0
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 5.0e-09 65.1 72 52.8
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 6.5e-09 64.7 82 46.3
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 6.5e-09 64.7 61 54.1
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 6.5e-09 64.7 60 53.3
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 6.5e-09 64.7 60 53.3
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 8.5e-09 64.3 59 55.9
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 1.1e-08 63.9 61 54.1
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 1.1e-08 63.9 61 54.1
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 1.1e-08 63.9 61 54.1
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 1.1e-08 63.9 69 46.4
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 1.1e-08 63.9 59 55.9
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 1.4e-08 63.5 55 54.5
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.4e-08 63.5 58 55.2
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 1.4e-08 63.5 57 57.9
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 1.9e-08 63.2 61 49.2
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 1.9e-08 63.2 60 53.3
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 1.9e-08 63.2 65 53.8
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 1.9e-08 63.2 58 56.9
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 2.5e-08 62.8 61 54.1
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 2.5e-08 62.8 56 58.9
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 2.5e-08 62.8 65 53.8
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 3.2e-08 62.4 61 54.1
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.2e-08 62.4 58 53.4
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 3.2e-08 62.4 58 53.4
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 3.2e-08 62.4 61 52.5
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 4.2e-08 62.0 59 55.9
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 4.2e-08 62.0 55 61.8
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 4.2e-08 62.0 59 54.2
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 4.2e-08 62.0 57 56.1
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 4.2e-08 62.0 59 52.5
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 4.2e-08 62.0 90 43.3
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 5.5e-08 61.6 64 54.7
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 5.5e-08 61.6 61 54.1
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 5.5e-08 61.6 61 54.1
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 5.5e-08 61.6 58 53.4
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 5.5e-08 61.6 58 53.4
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 7.2e-08 61.2 61 55.7
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 7.2e-08 61.2 61 55.7
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 7.2e-08 61.2 61 55.7
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 7.2e-08 61.2 56 55.4
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 7.2e-08 61.2 58 53.4
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 7.2e-08 61.2 58 55.2
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 9.3e-08 60.8 59 54.2
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 1.2e-07 60.5 61 50.8
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 1.6e-07 60.1 58 53.4
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 1.6e-07 60.1 59 50.8
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 2.1e-07 59.7 61 54.1
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 2.1e-07 59.7 57 54.4
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 2.1e-07 59.7 57 54.4
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 2.1e-07 59.7 59 50.8
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 2.7e-07 59.3 57 54.4
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 3.6e-07 58.9 64 45.3
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 4.6e-07 58.5 57 54.4
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 4.6e-07 58.5 56 55.4
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 6.1e-07 58.2 61 54.1
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 6.1e-07 58.2 57 52.6
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 6.1e-07 58.2 53 56.6
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.0e-06 57.4 63 49.2
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.3e-06 57.0 66 50.0
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 1.3e-06 57.0 56 55.4
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 1.3e-06 57.0 54 55.6
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 1.3e-06 57.0 56 53.6
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 1.8e-06 56.6 59 50.8
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 2.3e-06 56.2 56 51.8
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 2.3e-06 56.2 92 37.0
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 3.0e-06 55.8 32 84.4
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 3.9e-06 55.5 59 49.2
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 5.1e-06 55.1 66 48.5
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 5.1e-06 55.1 52 57.7
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 5.1e-06 55.1 57 50.9
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 8.7e-06 54.3 75 37.3
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 8.7e-06 54.3 63 49.2


User provided reference genes

Program Settings