Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 2.2e-255 885.2 464 100.0
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.8e-194 682.2 461 78.3
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.8e-186 655.6 463 76.5
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 5.4e-185 651.4 462 75.3
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.0e-184 649.4 462 75.1
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.5e-182 643.3 467 75.2
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 4.0e-180 635.2 463 73.7
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 1.6e-173 613.2 462 71.6
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 8.0e-173 610.9 465 71.2
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 5.2e-172 608.2 468 71.6
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 3.7e-170 602.1 463 70.8
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.4e-169 599.4 462 70.6
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.6e-168 596.7 462 71.2
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.0e-167 592.4 454 70.5
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.6e-165 585.5 461 68.8
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.0e-164 582.0 457 68.3
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.6e-163 579.3 463 67.6
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 1.3e-159 567.0 461 66.8
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.8e-157 559.3 459 66.4
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.6e-155 552.7 459 66.9
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 4.9e-154 548.5 459 66.4
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 3.2e-153 545.8 459 66.2
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.2e-152 543.9 459 65.6
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 7.3e-142 508.1 465 62.8
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 8.1e-133 478.0 463 59.0
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 4.2e-129 465.7 421 63.2
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.0e-122 444.5 480 54.8
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 3.3e-118 429.5 469 53.7
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 1.1e-116 424.5 477 50.5
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 4.1e-116 422.5 467 51.8
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.6e-115 419.9 476 50.0
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 4.5e-115 419.1 475 49.7
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.0e-114 417.9 468 53.0
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.0e-114 415.6 474 50.0
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 6.5e-114 415.2 474 49.6
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 3.2e-113 412.9 466 50.6
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.2e-113 412.5 470 49.1
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 9.3e-113 411.4 478 49.8
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.2e-112 411.0 470 48.9
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.6e-112 410.6 480 51.0
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 1.6e-112 410.6 476 47.9
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.6e-112 409.1 475 51.6
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 7.9e-112 408.3 469 50.3
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.0e-111 407.9 472 51.7
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 1.3e-111 407.5 473 49.3
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 3.0e-111 406.4 475 49.5
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.5e-110 404.1 472 50.2
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.9e-110 403.7 475 49.3
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 4.3e-110 402.5 467 49.0
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 7.4e-110 401.7 485 49.5
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.3e-109 401.0 470 48.1
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.1e-108 396.4 469 49.5
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.1e-108 396.4 469 49.5
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 6.9e-108 395.2 482 50.0
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.2e-107 394.4 484 49.0
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 1.5e-107 394.0 478 50.0
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 3.4e-107 392.9 491 48.9
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 5.9e-107 392.1 472 49.2
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 7.7e-107 391.7 475 49.9
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.7e-106 390.6 473 50.3
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 8.5e-106 388.3 488 48.4
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.1e-105 387.9 475 49.7
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.4e-105 387.5 474 47.9
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.4e-105 387.5 481 48.0
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.9e-105 387.1 474 48.3
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 4.2e-105 386.0 486 45.5
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 5.5e-105 385.6 479 48.6
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.6e-104 384.0 475 49.3
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 1.0e-103 381.3 488 48.6
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.4e-103 380.9 473 49.5
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 2.3e-103 380.2 466 48.7
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 3.9e-103 379.4 336 64.3
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 3.9e-103 379.4 471 47.1
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 5.1e-103 379.0 476 48.1
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 6.7e-103 378.6 462 46.5
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 6.7e-103 378.6 469 47.5
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.5e-102 377.5 472 47.7
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 9.7e-102 374.8 472 47.0
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 8.2e-101 371.7 486 46.7
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.5e-99 367.5 470 47.0
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.5e-99 365.9 462 45.7
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 4.5e-99 365.9 469 46.5
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 7.7e-99 365.2 386 50.3
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.3e-98 364.4 462 45.9
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 2.2e-98 363.6 484 47.9
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.5e-97 359.0 462 45.9
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.2e-96 357.8 479 47.2
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 2.1e-96 357.1 502 44.2
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.8e-95 354.0 379 50.7
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 3.0e-95 353.2 538 42.4
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 7.4e-94 348.6 473 44.6
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.7e-93 347.4 496 42.3
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 2.2e-93 347.1 469 44.8
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.4e-92 344.4 495 42.2
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.8e-92 344.0 462 44.8
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 4.1e-92 342.8 481 45.9
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 9.1e-92 341.7 475 42.9
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 9.1e-92 341.7 472 44.7
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.2e-91 341.3 477 43.4
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 2.6e-91 340.1 598 39.0
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 5.9e-91 339.0 473 43.8
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 7.7e-91 338.6 475 45.3
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 7.7e-91 338.6 437 47.4
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.3e-90 337.8 475 45.3
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.5e-89 334.3 473 43.3
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.5e-89 333.6 348 51.4
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 4.2e-89 332.8 473 42.7
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 9.4e-89 331.6 387 49.6
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 2.1e-88 330.5 390 50.8
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.1e-88 330.5 471 42.7
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 2.1e-88 330.5 458 41.7
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 4.7e-88 329.3 384 48.4
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 4.7e-88 329.3 468 43.2
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.0e-87 328.2 367 49.0
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.8e-87 327.4 463 43.6
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 4.0e-87 326.2 461 43.0
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.5e-86 324.3 468 42.3
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 2.0e-86 323.9 463 43.4
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 9.7e-86 321.6 463 42.8
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 4.8e-85 319.3 462 42.6
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.5e-83 313.2 426 44.6
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.9e-82 310.1 310 53.9
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.1e-81 308.1 413 43.8
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 7.2e-81 305.4 281 54.4
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 4.0e-79 299.7 529 38.4
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 3.7e-77 293.1 420 42.6
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 3.5e-75 286.6 367 43.6
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 7.7e-75 285.4 460 40.2
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 2.9e-74 283.5 472 39.2
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.6e-72 277.7 369 40.7
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.1e-72 277.3 330 49.4
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.0e-70 270.8 386 46.6
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 8.3e-69 265.4 415 41.4
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 2.7e-67 260.4 368 40.5
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 2.7e-67 260.4 372 41.7
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.1e-64 250.8 316 44.6
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.1e-64 250.8 449 38.5
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 3.6e-64 250.0 280 55.4
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 6.1e-64 249.2 380 39.7
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.4e-63 248.1 318 45.3
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.3e-63 247.3 316 44.3
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.0e-63 246.5 316 44.3
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 4.0e-63 246.5 365 41.1
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 5.2e-63 246.1 360 40.0
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 1.5e-62 244.6 279 52.0
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 5.7e-62 242.7 374 42.5
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 3.7e-61 240.0 252 50.4
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 2.4e-60 237.3 315 41.6
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.3e-57 226.5 309 42.7
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 2.8e-56 223.8 378 39.4
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.4e-54 216.5 395 37.0
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.9e-53 213.8 294 41.8
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 6.4e-53 212.6 404 37.4
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 5.6e-49 199.5 327 38.2
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 5.6e-49 199.5 259 42.1
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 5.6e-49 199.5 141 68.1
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.1e-47 195.3 370 36.2
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 4.0e-47 193.4 227 48.0
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 2.6e-46 190.7 197 50.8
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 4.1e-44 183.3 368 37.0
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 3.5e-43 180.3 260 41.9
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.3e-42 177.6 238 40.3
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 5.1e-42 176.4 401 31.7
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 3.9e-34 150.2 139 53.2
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.1e-31 142.1 105 70.5
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 5.2e-31 139.8 209 39.2
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 1.1e-28 132.1 249 39.0
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.3e-26 125.2 71 77.5
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.3e-23 113.2 190 36.3
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 6.9e-23 112.8 88 67.0
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 5.8e-22 109.8 201 35.8
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 4.9e-21 106.7 96 54.2
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 5.4e-20 103.2 192 36.5
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 2.1e-19 101.3 85 62.4
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.3e-18 97.8 65 72.3
BcaC07g36872 Brassica carinata HOM05D003737 ORTHO05D004640 3.8e-13 80.5 216 29.6
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 1.1e-12 79.0 66 63.6
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 1.6e-08 65.1 131 35.9
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 1.8e-07 61.6 52 63.5
Sp7g10590 Schrenkiella parvula HOM05D003737 ORTHO05D004640 9.0e-07 59.3 83 48.2
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.5e-06 58.5 52 55.8
BcaB01g00036 Brassica carinata HOM05D003737 ORTHO05D095156 2.6e-06 57.8 78 48.7


User provided reference genes

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