Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 1.3e-60 236.1 113 100.0
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 3.2e-35 151.8 117 65.8
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 1.8e-33 146.0 118 69.5
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 6.8e-33 144.1 118 63.6
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 6.8e-33 144.1 118 66.1
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 6.8e-33 144.1 113 61.9
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 8.8e-33 143.7 119 63.0
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 7.5e-32 140.6 118 63.6
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 9.8e-32 140.2 118 64.4
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 1.3e-31 139.8 119 63.9
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 1.7e-31 139.4 119 63.0
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 1.7e-31 139.4 118 63.6
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 1.7e-31 139.4 118 63.6
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 4.5e-29 131.3 105 64.8
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 3.4e-24 115.2 109 60.6
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 1.6e-21 106.3 109 55.0
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 2.0e-21 105.9 116 52.6
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 5.6e-19 97.8 115 51.3
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 7.3e-19 97.4 115 50.4
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 7.3e-19 97.4 115 50.4
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 2.1e-18 95.9 105 57.1
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 1.1e-17 93.6 115 49.6
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 1.1e-17 93.6 115 49.6
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 1.1e-17 93.6 115 49.6
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 1.1e-17 93.6 115 48.7
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 1.4e-17 93.2 117 49.6
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 2.3e-17 92.4 67 68.7
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 8.9e-17 90.5 69 63.8
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 4.4e-16 88.2 93 55.9
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 5.8e-16 87.8 67 65.7
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 9.8e-16 87.0 115 47.8
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 9.8e-16 87.0 78 59.0
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 2.9e-15 85.5 67 64.2
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 3.7e-15 85.1 67 65.7
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 3.7e-15 85.1 67 61.2
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 3.7e-15 85.1 78 57.7
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 6.4e-15 84.3 67 64.2
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 8.3e-15 84.0 75 57.3
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 1.1e-14 83.6 68 63.2
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 1.4e-14 83.2 85 52.9
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 2.4e-14 82.4 63 65.1
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 4.1e-14 81.6 67 62.7
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 9.2e-14 80.5 75 52.0
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 9.2e-14 80.5 75 52.0
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 2.0e-13 79.3 69 59.4
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 2.7e-13 79.0 68 58.8
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 2.7e-13 79.0 69 59.4
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 2.7e-13 79.0 61 62.3
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 2.7e-13 79.0 85 51.8
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 3.5e-13 78.6 72 56.9
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 3.5e-13 78.6 67 58.2
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 7.8e-13 77.4 86 46.5
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 7.8e-13 77.4 48 77.1
BcaC04g19970 Brassica carinata HOM05D007262 ORTHO05D008524 1.0e-12 77.0 115 42.6
C09p49280 Brassica napus HOM05D007262 ORTHO05D008524 1.0e-12 77.0 115 42.6
BolC9t57779H Brassica oleracea HOM05D007262 ORTHO05D008524 1.0e-12 77.0 115 42.6
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 1.0e-12 77.0 60 58.3
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 1.3e-12 76.6 77 55.8
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 1.7e-12 76.3 86 46.5
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.7e-12 76.3 70 54.3
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 2.3e-12 75.9 80 53.8
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 2.3e-12 75.9 101 44.6
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 3.9e-12 75.1 77 54.5
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 3.9e-12 75.1 71 53.5
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 6.6e-12 74.3 69 56.5
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 8.6e-12 73.9 61 55.7
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 1.9e-11 72.8 70 57.1
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 1.9e-11 72.8 61 60.7
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 2.5e-11 72.4 109 40.4
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 2.5e-11 72.4 78 48.7
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 3.3e-11 72.0 104 45.2
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 3.3e-11 72.0 97 46.4
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 3.3e-11 72.0 84 48.8
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 3.3e-11 72.0 91 50.5
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 4.3e-11 71.6 75 48.0
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 5.6e-11 71.2 107 40.2
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 7.3e-11 70.9 98 45.9
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 9.5e-11 70.5 122 36.9
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 1.2e-10 70.1 66 54.5
A10p14860 Brassica napus HOM05D007262 ORTHO05D008524 1.6e-10 69.7 115 39.1
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 1.6e-10 69.7 80 52.5
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 2.1e-10 69.3 83 49.4
BraA10t43564Z Brassica rapa HOM05D007262 ORTHO05D008524 2.1e-10 69.3 115 39.1
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 2.1e-10 69.3 78 44.9
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 2.8e-10 68.9 82 46.3
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 3.6e-10 68.6 63 47.6
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 6.2e-10 67.8 83 48.2
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 6.2e-10 67.8 72 54.2
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 8.1e-10 67.4 69 55.1
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 1.1e-09 67.0 59 61.0
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 1.1e-09 67.0 104 47.1
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 2.3e-09 65.9 72 52.8
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 6.8e-09 64.3 65 47.7
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 1.5e-08 63.2 68 41.2
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 2.0e-08 62.8 90 40.0
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 3.4e-08 62.0 80 46.2
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 9.9e-08 60.5 99 36.4
Peaxi162Scf01078g00031 Petunia axillaris HOM05D002277 ORTHO05D001770 1.3e-07 60.1 96 42.7
BolC8t48635H Brassica oleracea HOM05D030154 ORTHO05D043166 1.7e-07 59.7 86 48.8
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 3.7e-07 58.5 93 37.6
Migut.J01486 Erythranthe guttata HOM05D007262 ORTHO05D008524 9.2e-06 53.9 93 41.9


User provided reference genes

Program Settings