Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 5.4e-94 347.8 196 100.0
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 1.3e-68 263.5 181 74.6
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 2.3e-68 262.7 181 74.6
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 2.3e-68 262.7 181 74.6
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 3.0e-68 262.3 181 74.0
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 1.6e-66 256.5 180 82.2
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-64 250.0 171 74.9
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 4.3e-59 231.9 181 78.5
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 5.8e-56 221.5 180 75.0
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 3.8e-55 218.8 181 75.1
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 2.4e-54 216.1 180 72.8
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 3.2e-54 215.7 180 73.9
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 4.6e-53 211.8 180 73.3
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 6.0e-53 211.5 180 72.2
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 4.4e-48 195.3 181 59.1
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 5.4e-46 188.3 180 62.8
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.3e-44 183.0 180 64.4
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 3.1e-41 172.6 181 53.0
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 3.1e-41 172.6 181 53.0
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 9.0e-41 171.0 180 60.0
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 3.4e-40 169.1 181 52.5
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 3.8e-39 165.6 181 51.9
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 2.1e-37 159.8 180 58.3
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 6.0e-37 158.3 188 54.3
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 6.0e-37 158.3 181 55.8
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 2.3e-36 156.4 182 57.7
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 2.3e-36 156.4 180 55.0
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 1.1e-35 154.1 185 47.6
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 1.9e-35 153.3 188 56.4
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 4.3e-35 152.1 181 58.0
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 7.4e-35 151.4 187 55.1
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 7.4e-35 151.4 243 45.7
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 1.6e-34 150.2 180 51.7
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.6e-34 150.2 180 55.6
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 2.1e-34 149.8 187 52.4
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 2.1e-34 149.8 180 55.6
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 3.7e-34 149.1 180 55.6
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 1.1e-33 147.5 180 53.9
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 1.5e-32 143.7 181 53.6
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 1.5e-32 143.7 206 50.5
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 7.6e-32 141.4 182 54.4
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 1.3e-31 140.6 180 54.4
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 1.3e-31 140.6 149 61.1
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 1.7e-31 140.2 180 55.0
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 1.7e-31 140.2 180 55.0
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 2.9e-31 139.4 185 55.1
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 3.8e-31 139.0 180 55.0
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 8.4e-31 137.9 182 52.7
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.1e-30 137.5 180 53.9
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.1e-30 137.5 182 53.3
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 2.5e-30 136.3 180 53.9
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.5e-30 136.3 183 51.9
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 3.2e-30 136.0 183 51.9
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 4.2e-30 135.6 183 51.9
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 4.2e-30 135.6 180 53.3
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 5.5e-30 135.2 180 52.8
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 7.1e-30 134.8 182 53.8
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 7.1e-30 134.8 187 50.8
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 7.1e-30 134.8 187 50.8
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 7.1e-30 134.8 185 53.5
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 9.3e-30 134.4 183 54.6
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 1.2e-29 134.0 182 56.0
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 1.2e-29 134.0 182 56.0
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 1.2e-29 134.0 182 56.0
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 1.2e-29 134.0 182 56.0
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.6e-29 133.7 180 53.3
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.6e-29 133.7 180 53.3
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.1e-29 133.3 180 52.8
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 2.1e-29 133.3 195 49.2
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 2.7e-29 132.9 180 51.7
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 3.5e-29 132.5 180 52.2
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 3.5e-29 132.5 180 52.2
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 3.5e-29 132.5 180 52.2
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 4.6e-29 132.1 180 52.8
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.6e-29 132.1 180 52.8
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 4.6e-29 132.1 143 62.9
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 6.0e-29 131.7 143 58.0
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 7.9e-29 131.3 184 52.7
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 7.9e-29 131.3 143 60.8
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.0e-28 131.0 180 52.8
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 1.3e-28 130.6 181 53.0
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 1.3e-28 130.6 181 53.0
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 1.3e-28 130.6 182 53.3
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 1.8e-28 130.2 180 49.4
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 3.0e-28 129.4 181 51.4
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 3.0e-28 129.4 140 59.3
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 3.9e-28 129.0 184 53.8
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 6.7e-28 128.3 180 51.7
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 8.7e-28 127.9 181 49.2
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 1.5e-27 127.1 199 48.2
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 1.9e-27 126.7 173 51.4
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 4.3e-27 125.6 185 48.1
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 3.7e-26 122.5 181 39.2
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 4.8e-26 122.1 180 47.8
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 8.2e-26 121.3 132 61.4
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 1.1e-25 120.9 182 51.6
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 1.1e-25 120.9 182 51.6
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 1.1e-25 120.9 181 51.4
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 1.1e-25 120.9 191 50.3
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 1.4e-25 120.6 181 53.6
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.8e-25 120.2 181 50.3
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 1.8e-25 120.2 181 50.3
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 2.4e-25 119.8 145 59.3
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 2.4e-25 119.8 183 51.4
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 3.1e-25 119.4 191 49.2
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 5.3e-25 118.6 183 48.6
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 6.9e-25 118.2 159 45.9
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.2e-24 117.5 190 48.4
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.2e-24 117.5 183 47.5
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 2.6e-24 116.3 164 47.0
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 3.4e-24 115.9 178 47.8
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 3.4e-24 115.9 180 46.7
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 5.8e-24 115.2 181 48.1
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 7.6e-24 114.8 180 46.7
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.0e-23 114.4 145 55.2
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 4.9e-23 112.1 81 93.8
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 4.9e-23 112.1 142 54.2
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 3.2e-22 109.4 145 53.8
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 9.3e-22 107.8 186 46.2
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 1.2e-21 107.5 129 44.2
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 6.0e-21 105.1 180 46.7
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 7.9e-21 104.8 145 52.4
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 1.3e-20 104.0 189 44.4
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.8e-20 103.6 151 54.3
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.3e-20 103.2 85 61.2
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 5.1e-20 102.1 164 46.3
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 3.3e-19 99.4 180 35.6
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 7.4e-19 98.2 117 41.0
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 1.3e-18 97.4 182 44.0
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 4.5e-16 89.0 122 37.7
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 2.2e-15 86.7 124 50.8
SGA_v2.0_scaffold75G24776 Striga asiatica HOM05D005036 ORTHO05D005881 2.2e-15 86.7 158 38.6
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 2.2e-15 86.7 125 48.8
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 5.0e-15 85.5 86 70.9
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 6.5e-15 85.1 178 30.9
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 6.5e-15 85.1 178 30.9
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.1e-14 84.3 90 65.6
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 5.5e-14 82.0 161 31.7
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.6e-13 79.0 117 49.6
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.4e-12 77.4 122 49.2
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 2.3e-12 76.6 173 39.3
Atru.chr6.1495 Acer truncatum HOM05D005036 ORTHO05D005881 2.5e-11 73.2 46 71.7
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 2.5e-11 73.2 154 33.8
Atru.chr4.2604 Acer truncatum HOM05D005036 ORTHO05D005881 8.2e-10 68.2 49 65.3
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 1.1e-09 67.8 148 32.4
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 1.8e-09 67.0 172 38.4
THA.LOC104816358 Tarenaya hassleriana HOM05D000255 ORTHO05D001008 2.0e-08 63.5 43 69.8
AL7G50030 Arabidopsis lyrata HOM05D055290 ORTHO05D038628 2.2e-07 60.1 152 30.9
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 8.5e-07 58.2 59 54.2
CBR_g37530 Chara braunii HOM05D002729 ORTHO05D003163 5.5e-06 55.5 93 36.6


User provided reference genes

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