Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 2.4e-125 452.2 238 100.0
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 1.3e-81 307.0 246 72.8
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 8.2e-81 304.3 249 71.5
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 7.0e-80 301.2 245 71.8
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 6.5e-78 294.7 242 70.2
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 6.5e-78 294.7 245 70.2
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 1.5e-77 293.5 240 71.2
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 1.5e-77 293.5 240 71.2
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 4.2e-77 292.0 242 69.8
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 4.2e-77 292.0 242 69.8
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 8.0e-76 287.7 249 69.1
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 5.2e-75 285.0 240 70.0
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 5.2e-75 285.0 249 68.3
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 5.7e-74 281.6 245 68.6
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 9.8e-74 280.8 245 68.2
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 6.3e-73 278.1 246 66.7
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 1.1e-56 224.2 200 67.5
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 1.9e-45 186.8 204 54.9
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 2.5e-45 186.4 127 78.7
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.2e-44 184.1 179 58.1
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 3.6e-44 182.6 188 56.9
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 4.7e-44 182.2 161 63.4
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 6.2e-44 181.8 236 48.7
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 6.2e-44 181.8 173 58.4
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 8.1e-44 181.4 177 59.3
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 1.8e-43 180.3 143 67.1
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 1.8e-43 180.3 236 47.9
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 2.3e-43 179.9 172 61.0
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 2.3e-43 179.9 179 57.0
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 3.1e-43 179.5 237 50.2
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 4.0e-43 179.1 172 61.0
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 6.8e-43 178.3 167 60.5
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 6.8e-43 178.3 177 57.6
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 1.2e-42 177.6 244 48.8
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 1.5e-42 177.2 163 60.7
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 2.0e-42 176.8 172 58.1
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 2.0e-42 176.8 167 59.9
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 3.4e-42 176.0 167 59.9
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 4.4e-42 175.6 118 79.7
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 5.8e-42 175.3 161 61.5
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 5.8e-42 175.3 217 50.2
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 7.5e-42 174.9 148 63.5
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 7.5e-42 174.9 261 44.8
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 1.3e-41 174.1 225 48.0
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.3e-41 174.1 186 54.3
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 2.2e-41 173.3 245 46.9
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 3.7e-41 172.6 176 57.4
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 6.4e-41 171.8 186 53.8
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 1.1e-40 171.0 165 59.4
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 1.1e-40 171.0 246 47.6
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 1.4e-40 170.6 197 53.3
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 2.4e-40 169.9 221 47.1
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 3.2e-40 169.5 232 46.6
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 3.2e-40 169.5 282 46.5
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 4.1e-40 169.1 194 53.6
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 4.1e-40 169.1 194 53.6
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 5.4e-40 168.7 186 53.2
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 9.2e-40 167.9 180 55.0
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 9.2e-40 167.9 190 54.2
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 1.2e-39 167.5 147 68.0
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 3.5e-39 166.0 139 64.0
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 6.0e-39 165.2 179 54.7
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.3e-38 164.1 171 55.0
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 2.3e-38 163.3 147 60.5
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 5.1e-38 162.2 149 57.0
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 6.6e-38 161.8 170 55.3
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 6.6e-38 161.8 139 61.2
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 8.6e-38 161.4 257 44.7
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 1.5e-37 160.6 234 44.4
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 3.3e-37 159.5 144 59.0
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 3.3e-37 159.5 245 44.1
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 4.3e-37 159.1 152 57.2
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 5.6e-37 158.7 165 52.1
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 5.6e-37 158.7 169 55.0
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 7.3e-37 158.3 171 53.8
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 1.2e-36 157.5 169 54.4
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 1.2e-36 157.5 229 45.9
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 1.1e-35 154.5 255 42.4
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 1.8e-35 153.7 163 53.4
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 2.4e-35 153.3 249 45.8
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 3.1e-35 152.9 170 51.8
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 8.9e-35 151.4 157 55.4
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.5e-34 150.6 239 42.7
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 1.5e-34 150.6 148 54.7
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 4.4e-34 149.1 247 40.9
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 5.8e-34 148.7 146 56.8
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 5.8e-34 148.7 137 59.9
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 7.1e-32 141.7 141 56.7
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 3.0e-30 136.3 123 60.2
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 8.7e-30 134.8 121 59.5
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 4.3e-29 132.5 128 57.0
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 5.6e-29 132.1 125 58.4
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 8.1e-28 128.3 166 45.8
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 1.1e-27 127.9 78 83.3
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 1.4e-27 127.5 114 61.4
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 3.1e-27 126.3 114 60.5
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 4.0e-27 125.9 114 60.5
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 1.5e-26 124.0 146 50.0
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 4.4e-26 122.5 168 43.5
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 1.7e-25 120.6 234 36.8
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 8.4e-25 118.2 212 41.0
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 8.4e-25 118.2 114 59.6
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 3.5e-23 112.8 162 45.1
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 7.8e-23 111.7 115 53.9
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 7.9e-15 85.1 123 42.3
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 8.7e-14 81.6 170 35.3
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 1.9e-13 80.5 254 31.5
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 2.5e-13 80.1 54 79.6
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 5.6e-13 79.0 149 30.9
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.0e-09 68.2 68 52.9
Mapoly0153s0019 Marchantia polymorpha HOM05D007026 ORTHO05D008493 6.4e-09 65.5 168 32.1
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 8.4e-09 65.1 38 81.6
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 6.0e-07 58.9 51 51.0
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 6.0e-07 58.9 86 46.5


User provided reference genes

Program Settings