Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 6.4e-174 614.0 311 100.0
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 2.6e-151 538.9 312 86.5
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 4.9e-150 534.6 312 86.2
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 2.4e-149 532.3 312 86.2
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 5.4e-149 531.2 312 85.9
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 5.4e-149 531.2 312 85.9
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 7.1e-149 530.8 312 85.9
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 2.7e-148 528.9 313 85.3
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 6.0e-148 527.7 309 85.1
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 1.0e-147 526.9 306 88.9
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 3.9e-147 525.0 309 87.1
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 3.3e-146 521.9 311 84.9
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 4.3e-146 521.5 312 84.3
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 7.3e-146 520.8 312 83.7
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 3.6e-145 518.5 307 86.3
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.1e-144 516.9 313 82.7
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.4e-144 516.5 312 82.7
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.3e-142 510.0 310 82.6
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 2.9e-142 508.8 312 81.7
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 1.4e-141 506.5 313 80.5
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.4e-141 506.5 313 81.2
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 2.4e-141 505.8 312 81.1
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 7.1e-141 504.2 315 81.0
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 7.1e-141 504.2 313 81.5
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 1.2e-140 503.4 313 80.8
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.6e-140 503.1 312 80.1
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 2.1e-140 502.7 313 80.8
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 3.5e-140 501.9 313 81.8
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 4.6e-140 501.5 313 80.5
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 6.0e-140 501.1 312 81.1
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 6.0e-140 501.1 313 81.5
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 6.0e-140 501.1 315 80.6
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 7.8e-140 500.7 313 79.9
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.0e-139 500.4 313 81.2
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.0e-139 500.4 313 80.8
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 1.0e-139 500.4 313 80.8
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 1.3e-139 500.0 313 80.5
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 1.3e-139 500.0 313 80.8
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 1.7e-139 499.6 313 80.2
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.7e-139 499.6 314 81.2
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 1.7e-139 499.6 312 80.1
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 2.3e-139 499.2 312 79.2
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 2.3e-139 499.2 313 79.9
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 2.3e-139 499.2 313 81.2
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 2.3e-139 499.2 313 80.5
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 3.0e-139 498.8 313 80.2
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 3.0e-139 498.8 313 80.5
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 3.0e-139 498.8 313 81.2
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 3.0e-139 498.8 313 80.8
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.9e-139 498.4 328 78.0
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 5.1e-139 498.0 313 80.5
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 5.1e-139 498.0 313 80.2
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.1e-138 496.9 313 80.2
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 1.5e-138 496.5 313 80.8
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 1.5e-138 496.5 313 79.6
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 1.5e-138 496.5 314 80.3
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.5e-138 496.5 314 80.6
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 1.5e-138 496.5 313 79.9
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 1.9e-138 496.1 313 80.2
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 2.5e-138 495.7 312 79.5
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 2.5e-138 495.7 312 79.5
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 2.5e-138 495.7 312 80.1
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 4.3e-138 495.0 313 79.6
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 7.3e-138 494.2 308 81.2
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 9.6e-138 493.8 313 79.6
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.3e-137 493.4 313 78.6
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.3e-137 493.4 313 78.6
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 2.1e-137 492.7 313 79.6
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 2.1e-137 492.7 313 79.6
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 3.6e-137 491.9 313 78.9
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.8e-137 491.5 313 79.6
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 6.2e-137 491.1 313 79.2
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 1.1e-136 490.3 312 78.2
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 1.8e-136 489.6 313 77.6
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 2.4e-136 489.2 313 78.6
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 1.2e-135 486.9 307 79.5
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 1.5e-135 486.5 310 78.4
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 2.6e-135 485.7 314 78.0
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.6e-135 485.7 314 78.0
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 2.6e-135 485.7 314 78.3
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 3.4e-135 485.3 313 77.6
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 4.5e-135 485.0 314 79.0
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.5e-135 485.0 314 78.0
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.6e-135 484.2 314 77.7
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.6e-135 484.2 314 77.7
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.6e-135 484.2 314 77.7
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 7.6e-135 484.2 313 78.0
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 7.6e-135 484.2 311 76.8
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.9e-135 483.8 314 77.7
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 1.3e-134 483.4 313 77.6
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 1.7e-134 483.0 314 80.6
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 2.2e-134 482.6 313 78.0
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 4.9e-134 481.5 336 74.4
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 6.4e-134 481.1 313 77.0
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.4e-134 481.1 337 74.8
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 7.1e-133 477.6 312 78.5
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 1.2e-132 476.9 313 77.0
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 1.2e-132 476.9 313 77.0
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 1.2e-132 476.9 313 76.0
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 1.6e-132 476.5 309 78.6
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 1.6e-132 476.5 313 76.7
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 2.7e-132 475.7 308 81.2
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 2.7e-132 475.7 313 78.3
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 6.0e-132 474.6 319 75.9
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 7.9e-132 474.2 308 79.2
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 7.9e-132 474.2 309 78.3
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 1.3e-131 473.4 317 75.4
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 3.0e-131 472.2 313 76.4
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 5.1e-131 471.5 313 76.4
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 1.1e-130 470.3 311 76.5
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 1.5e-130 469.9 319 77.1
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 2.5e-130 469.2 309 78.6
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 7.4e-130 467.6 313 74.8
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 4.8e-129 464.9 303 77.6
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 6.2e-129 464.5 309 77.0
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 1.1e-128 463.8 380 66.1
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 1.9e-125 453.0 317 72.9
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 6.7e-123 444.5 306 70.9
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 1.9e-122 443.0 284 78.2
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 2.5e-122 442.6 316 70.3
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 2.6e-119 432.6 292 73.6
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 1.3e-118 430.3 287 76.3
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.3e-118 430.3 316 71.2
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 3.8e-118 428.7 324 68.8
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 1.1e-117 427.2 461 53.4
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 1.4e-117 426.8 283 76.7
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 4.2e-117 425.2 313 72.5
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 5.7e-114 414.8 282 75.9
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 3.4e-111 405.6 312 68.3
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.0e-110 404.1 259 80.7
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 3.2e-109 399.1 311 65.0
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 1.1e-104 384.0 284 68.3
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.5e-98 363.6 240 77.5
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 5.7e-82 308.5 213 73.2
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 9.1e-72 274.6 252 56.7
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 1.6e-71 273.9 302 48.3
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 1.1e-69 267.7 305 48.9
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 8.9e-67 258.1 190 67.9
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 7.0e-64 248.4 167 75.4
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.1e-61 241.1 177 70.1
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 1.5e-61 240.7 173 71.1
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 3.3e-61 239.6 270 50.0
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 9.5e-61 238.0 293 48.5
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 3.2e-56 223.0 299 43.1
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 2.5e-53 213.4 112 92.0
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 5.6e-53 212.2 277 44.8
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 5.6e-53 212.2 188 56.9
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 5.2e-51 205.7 136 77.9
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 4.9e-49 199.1 181 63.0
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 2.4e-48 196.8 186 60.2
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 9.2e-48 194.9 151 66.9
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 9.2e-48 194.9 151 66.9
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 8.9e-43 178.3 113 72.6
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 8.9e-43 178.3 113 72.6
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 1.2e-42 177.9 121 70.2
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.6e-42 176.8 100 82.0
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 4.4e-42 176.0 301 39.5
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 7.6e-42 175.3 113 71.7
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 1.1e-35 154.8 270 34.8
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 1.7e-33 147.5 145 58.6
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 6.4e-33 145.6 167 53.9
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 4.2e-32 142.9 145 57.2
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.9e-29 134.0 138 55.1
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 9.0e-27 125.2 80 78.8
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 9.0e-27 125.2 80 78.8
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 4.9e-25 119.4 179 45.3
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 2.1e-23 114.0 72 73.6
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 1.7e-22 110.9 60 85.0
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 6.6e-22 109.0 71 69.0
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 6.9e-19 99.0 53 88.7
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 1.2e-18 98.2 117 43.6
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.9e-18 95.1 116 51.7
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 2.2e-17 94.0 53 84.9
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 8.4e-17 92.0 113 53.1
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 4.2e-16 89.7 44 90.9
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 6.0e-15 85.9 49 83.7
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 2.8e-12 77.0 43 81.4
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 2.1e-07 60.8 37 64.9
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 6.0e-07 59.3 33 84.8
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 6.0e-07 59.3 33 84.8
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 6.0e-07 59.3 33 84.8
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 1.8e-06 57.8 37 62.2
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 3.9e-06 56.6 56 58.9
Glyma.12G161000 Glycine max HOM05D000557 ORTHO05D212538 5.1e-06 56.2 46 56.5


User provided reference genes

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