Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G1880 Aethionema arabicum HOM05D002160 ORTHO05D002012 2.0e-42 175.3 83 100.0
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 5.3e-27 124.0 84 79.8
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 1.2e-26 122.9 84 77.4
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 1.2e-26 122.9 84 77.4
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 1.6e-26 122.5 84 77.4
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 1.6e-26 122.5 84 77.4
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 1.6e-26 122.5 84 77.4
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 1.6e-26 122.5 84 77.4
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 1.3e-25 119.4 84 76.2
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 1.5e-24 115.9 84 72.6
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 2.1e-23 112.1 83 72.3
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 8.0e-23 110.2 83 71.1
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 2.3e-22 108.6 83 69.9
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 4.0e-22 107.8 83 69.9
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 6.7e-22 107.1 83 69.9
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 6.7e-22 107.1 83 69.9
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 8.8e-22 106.7 84 70.2
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 8.8e-22 106.7 84 70.2
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 1.1e-21 106.3 83 68.7
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 1.1e-21 106.3 83 68.7
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 2.0e-21 105.5 84 70.2
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 2.0e-21 105.5 84 70.2
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 3.3e-21 104.8 83 67.5
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 7.5e-21 103.6 84 70.2
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 7.5e-21 103.6 83 63.9
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 4.8e-20 100.9 84 66.7
A03p35970 Brassica napus HOM05D002160 ORTHO05D002012 1.1e-19 99.8 81 65.4
C03p43610 Brassica napus HOM05D002160 ORTHO05D002012 1.1e-19 99.8 81 65.4
BcaC03g18434 Brassica carinata HOM05D002160 ORTHO05D002012 1.4e-19 99.4 80 66.2
BcaB03g11601 Brassica carinata HOM05D002160 ORTHO05D002012 1.8e-19 99.0 82 64.6
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 4.1e-19 97.8 83 62.7
BcaC01g04233 Brassica carinata HOM05D002160 ORTHO05D002012 7.0e-19 97.1 81 63.0
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 9.1e-19 96.7 84 65.5
BraA01t04299Z Brassica rapa HOM05D002269 ORTHO05D002421 1.6e-18 95.9 80 63.8
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 4.5e-18 94.4 84 65.5
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 1.7e-17 92.4 84 64.3
A01p42320 Brassica napus HOM05D000351 ORTHO05D000250 1.7e-17 92.4 80 61.2
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 2.9e-17 91.7 84 63.1
BcaC09g48025 Brassica carinata HOM05D002160 ORTHO05D002012 2.9e-17 91.7 81 63.0
THA.LOC104827014 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 3.8e-17 91.3 83 61.4
BcaNung06991 Brassica carinata HOM05D002160 ORTHO05D002012 6.5e-17 90.5 74 67.6
C02p00440 Brassica napus HOM05D002160 ORTHO05D002012 6.5e-17 90.5 74 67.6
BolC2t06044H Brassica oleracea HOM05D002160 ORTHO05D002012 6.5e-17 90.5 74 67.6
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 8.5e-17 90.1 84 63.1
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 1.1e-16 89.7 83 60.2
BraA02t04716Z Brassica rapa HOM05D002160 ORTHO05D002012 1.5e-16 89.4 74 66.2
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 1.0e-14 83.2 81 58.0
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 1.0e-14 83.2 81 55.6
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 1.4e-14 82.8 83 57.8
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 1.4e-14 82.8 83 57.8
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.8e-14 82.4 81 55.6
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 1.8e-14 82.4 81 55.6
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 1.8e-14 82.4 83 57.8
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.3e-14 82.0 83 50.6
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 2.3e-14 82.0 85 52.9
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 3.0e-14 81.6 82 58.5
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 3.0e-14 81.6 82 58.5
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 3.0e-14 81.6 84 48.8
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 3.0e-14 81.6 81 55.6
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.0e-14 81.3 83 54.2
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 4.0e-14 81.3 83 50.6
Sed0014826 Sechium edule HOM05D002160 ORTHO05D002012 4.0e-14 81.3 83 51.8
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 5.2e-14 80.9 83 55.4
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 1.2e-13 79.7 83 53.0
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 1.2e-13 79.7 83 57.8
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 1.5e-13 79.3 83 55.4
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 3.4e-13 78.2 83 53.0
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 3.4e-13 78.2 81 54.3
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 7.5e-13 77.0 84 52.4
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 1.7e-12 75.9 82 50.0
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 1.7e-12 75.9 83 50.6
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 3.7e-12 74.7 85 54.1
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 6.3e-12 73.9 83 54.2
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 6.3e-12 73.9 83 51.8
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 6.3e-12 73.9 83 50.6
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 6.3e-12 73.9 83 50.6
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 1.1e-11 73.2 83 50.6
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 1.4e-11 72.8 83 51.8
BcaC09g48081 Brassica carinata HOM05D002269 ORTHO05D002421 1.8e-11 72.4 57 66.7
BolC1t05454H Brassica oleracea HOM05D002269 ORTHO05D002421 1.8e-11 72.4 57 66.7
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 1.8e-11 72.4 83 48.2
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 1.8e-11 72.4 83 50.6
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.4e-11 72.0 77 48.1
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 2.4e-11 72.0 83 51.8
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 3.1e-11 71.6 83 49.4
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.1e-11 71.2 83 47.0
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 4.1e-11 71.2 85 52.9
DCAR_014852 Daucus carota HOM05D002160 ORTHO05D002012 5.4e-11 70.9 84 50.0
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 5.4e-11 70.9 85 50.6
EL10Ac1g00022 Beta vulgaris HOM05D002160 ORTHO05D002012 9.1e-11 70.1 83 48.2
Migut.J00330 Erythranthe guttata HOM05D002160 ORTHO05D002012 9.1e-11 70.1 84 46.4
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 9.1e-11 70.1 83 53.0
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 9.1e-11 70.1 83 53.0
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 9.1e-11 70.1 83 50.6
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 9.1e-11 70.1 84 52.4
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.2e-10 69.7 83 53.0
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 1.2e-10 69.7 84 53.6
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 1.6e-10 69.3 84 52.4
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.6e-10 69.3 83 45.8
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 1.6e-10 69.3 69 55.1
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 2.0e-10 68.9 86 47.7
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 2.0e-10 68.9 83 47.0
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 2.7e-10 68.6 82 47.6
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 2.7e-10 68.6 83 47.0
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 2.7e-10 68.6 83 48.2
CDE08G0642 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 3.5e-10 68.2 83 45.8
Potri.006G085200 Populus trichocarpa HOM05D002160 ORTHO05D002012 3.5e-10 68.2 83 50.6
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 3.5e-10 68.2 83 53.0
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 4.5e-10 67.8 83 47.0
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 4.5e-10 67.8 83 45.8
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.5e-10 67.8 83 45.8
SGA_v2.0_scaffold35G14233 Striga asiatica HOM05D000119 ORTHO05D000054 4.5e-10 67.8 82 51.2
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 4.5e-10 67.8 86 48.8
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 5.9e-10 67.4 83 47.0
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 5.9e-10 67.4 82 50.0
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 5.9e-10 67.4 85 49.4
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 5.9e-10 67.4 83 44.6
ECA236G5071 Erigeron canadensis HOM05D002160 ORTHO05D002012 7.7e-10 67.0 82 41.5
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 7.7e-10 67.0 83 49.4
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.3e-09 66.2 82 45.1
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 1.7e-09 65.9 82 50.0
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.2e-09 65.5 82 45.1
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.2e-09 65.5 87 48.3
MBI17_g25955_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 2.2e-09 65.5 79 50.6
HPP92_006614 Vanilla planifolia HOM05D002160 ORTHO05D002012 2.2e-09 65.5 83 45.8
Ca_07544_v3 Cicer arietinum L. HOM05D002160 ORTHO05D002012 3.8e-09 64.7 59 59.3
TWI74G0912 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 3.8e-09 64.7 76 53.9
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 6.5e-09 63.9 83 45.8
Migut.L01944 Erythranthe guttata HOM05D002160 ORTHO05D002012 6.5e-09 63.9 83 51.8
Lalb_Chr19g0125331 Lupinus albus HOM05D002160 ORTHO05D002012 6.5e-09 63.9 80 47.5
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 8.5e-09 63.5 83 48.2
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 8.5e-09 63.5 83 48.2
Dinv37173 Davidia involucrata HOM05D002160 ORTHO05D002012 1.5e-08 62.8 85 42.4
Os12g0568500 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 1.5e-08 62.8 80 48.8
ATR0559G129 Amborella trichopoda HOM05D002160 ORTHO05D002012 1.9e-08 62.4 84 48.8
Lsat_1_v5_gn_7_83340 Lactuca sativa HOM05D002160 ORTHO05D002012 2.5e-08 62.0 84 48.8
Os12g0571100 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.5e-08 62.0 79 48.1
Eucgr.K03136 Eucalyptus grandis HOM05D002160 ORTHO05D002012 3.2e-08 61.6 81 49.4
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.2e-08 61.2 83 44.6
Os12g0568200 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 4.2e-08 61.2 81 48.1
SEGI_22523 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 4.2e-08 61.2 82 47.6
unitig_21.g21031 Utricularia gibba HOM05D002160 ORTHO05D002012 4.2e-08 61.2 84 48.8
HPP92_026928 Vanilla planifolia HOM05D002160 ORTHO05D002012 4.2e-08 61.2 83 48.2
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 5.5e-08 60.8 81 42.0
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 5.5e-08 60.8 80 43.8
SEGI_13620 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 5.5e-08 60.8 83 42.2
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 5.5e-08 60.8 83 43.4
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 7.2e-08 60.5 59 55.9
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 7.2e-08 60.5 81 43.2
CDE02G2904 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 9.4e-08 60.1 83 45.8
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 9.4e-08 60.1 82 47.6
arahy.Tifrunner.gnm1.ann1.N3YTXC Arachis hypogaea HOM05D002160 ORTHO05D002012 1.2e-07 59.7 81 48.1
HanXRQChr08g0227151 Helianthus annuus HOM05D002160 ORTHO05D002012 1.6e-07 59.3 82 41.5
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 2.1e-07 58.9 81 40.7
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 2.1e-07 58.9 81 40.7
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 2.1e-07 58.9 81 40.7
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.1e-07 58.9 83 41.0
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 2.7e-07 58.5 82 43.9
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 2.7e-07 58.5 82 42.7
Os12g0570700 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.7e-07 58.5 84 47.6
SEGI_28651 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 3.6e-07 58.2 83 42.2
TWI53G0132 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 3.6e-07 58.2 77 50.6
arahy.Tifrunner.gnm1.ann1.SS44WU Arachis hypogaea HOM05D002160 ORTHO05D002012 8.0e-07 57.0 85 48.2
Lalb_Chr03g0042231 Lupinus albus HOM05D002160 ORTHO05D002012 8.0e-07 57.0 59 50.8
MBI13_g34921_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 8.0e-07 57.0 47 61.7
Sed0021463 Sechium edule HOM05D002160 ORTHO05D002012 8.0e-07 57.0 86 41.9
Zm00001eb124800 Zea mays HOM05D002160 ORTHO05D002012 8.0e-07 57.0 61 49.2
CDE04G3517 Ceratophyllum demersum HOM05D002160 ORTHO05D002012 1.0e-06 56.6 79 45.6
SEGI_27338 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.0e-06 56.6 83 41.0
SEGI_31010 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.0e-06 56.6 83 41.0
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.4e-06 56.2 81 40.7
SEGI_28885 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.4e-06 56.2 83 43.4
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.8e-06 55.8 83 45.8
SEGI_27294 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 1.8e-06 55.8 83 44.6
unitig_744.g24657 Utricularia gibba HOM05D002160 ORTHO05D002012 2.3e-06 55.5 83 47.0
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 3.0e-06 55.1 59 50.8
Os12g0567800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 4.0e-06 54.7 81 44.4
Os12g0571000 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 4.0e-06 54.7 80 41.2
PGSC0003DMG401008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 5.2e-06 54.3 69 47.8
CAN.G111.42 Capsicum annuum HOM05D002160 ORTHO05D002012 6.8e-06 53.9 82 45.1
HanXRQChr11g0350841 Helianthus annuus HOM05D002160 ORTHO05D002012 6.8e-06 53.9 81 39.5
Os11g0704500 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 6.8e-06 53.9 75 42.7
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 6.8e-06 53.9 83 39.8
ECA247G1660 Erigeron canadensis HOM05D002160 ORTHO05D002012 8.8e-06 53.5 81 39.5
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 8.8e-06 53.5 70 45.7
SEGI_32259 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 8.8e-06 53.5 83 38.6


User provided reference genes

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