Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 1.6e-161 572.8 312 100.0
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 1.2e-116 423.7 312 72.8
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.7e-116 422.5 276 77.9
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 1.0e-115 420.6 305 75.7
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 7.4e-114 414.5 276 75.4
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 4.5e-111 405.2 312 69.6
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 1.0e-110 404.1 305 73.8
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 8.5e-110 401.0 306 73.5
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 1.4e-107 393.7 312 71.5
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 7.4e-106 387.9 311 65.9
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 1.0e-102 377.5 312 66.3
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 5.0e-102 375.2 271 70.8
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 9.7e-98 360.9 294 66.0
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.1e-96 357.5 274 66.8
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 3.5e-95 352.4 317 60.6
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 7.2e-93 344.7 295 64.1
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.2e-86 323.2 273 60.8
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 8.5e-86 321.2 273 60.8
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 8.5e-86 321.2 273 60.8
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 1.0e-83 314.3 272 60.7
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 4.0e-83 312.4 299 55.9
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 8.8e-83 311.2 294 58.8
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 8.8e-83 311.2 271 59.8
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.7e-81 307.0 258 60.5
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 2.2e-81 306.6 271 58.7
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 2.2e-81 306.6 303 57.4
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 4.9e-81 305.4 272 59.6
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 4.9e-81 305.4 268 59.0
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 1.1e-80 304.3 273 57.5
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 1.4e-80 303.9 274 58.0
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 1.8e-80 303.5 270 58.9
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 5.4e-80 302.0 274 57.7
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 5.4e-80 302.0 272 60.3
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 9.2e-80 301.2 271 58.3
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 2.0e-79 300.1 271 57.9
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 2.7e-79 299.7 302 54.3
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 2.7e-79 299.7 271 57.2
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.3e-78 297.4 271 60.9
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 8.0e-76 288.1 296 54.7
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 8.9e-75 284.6 275 57.5
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 1.5e-74 283.9 276 56.5
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 2.0e-74 283.5 274 55.8
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 3.4e-74 282.7 280 53.9
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 4.4e-74 282.3 297 52.9
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 5.7e-74 282.0 274 54.7
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 7.5e-74 281.6 265 58.1
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 9.8e-74 281.2 258 58.5
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 6.4e-73 278.5 270 55.6
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 1.4e-72 277.3 299 51.8
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 2.4e-72 276.6 277 53.4
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 3.2e-72 276.2 271 55.7
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 4.1e-72 275.8 271 56.8
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 5.4e-72 275.4 272 55.1
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 9.2e-72 274.6 276 54.7
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 9.2e-72 274.6 277 53.8
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 3.5e-71 272.7 268 53.7
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 3.5e-71 272.7 271 52.4
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 1.3e-70 270.8 275 52.7
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 1.3e-70 270.8 274 53.3
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 2.3e-70 270.0 272 54.8
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 3.0e-70 269.6 297 51.2
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 5.0e-70 268.9 272 54.8
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 8.6e-70 268.1 271 54.2
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 1.1e-69 267.7 270 52.2
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 3.3e-69 266.2 273 51.6
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 5.6e-69 265.4 275 53.5
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 5.6e-69 265.4 273 52.4
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 7.3e-69 265.0 249 57.0
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 1.0e-67 261.2 306 50.0
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 2.0e-66 256.9 270 51.5
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 4.4e-66 255.8 276 52.2
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 4.4e-66 255.8 254 54.3
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 5.8e-66 255.4 306 49.3
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 9.8e-66 254.6 273 50.2
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 9.8e-66 254.6 275 50.5
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 2.4e-64 250.0 261 53.3
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 4.1e-64 249.2 276 48.9
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 4.1e-64 249.2 338 45.6
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 7.0e-64 248.4 271 48.7
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.7e-62 243.8 272 50.4
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 8.6e-62 241.5 260 50.8
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 1.1e-61 241.1 291 49.1
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.9e-61 240.4 258 51.2
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 1.2e-60 237.7 219 56.6
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.2e-60 237.7 221 57.0
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 8.9e-59 231.5 275 49.5
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 1.5e-58 230.7 273 46.5
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 3.4e-58 229.6 274 48.2
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 4.4e-58 229.2 274 46.0
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.7e-57 227.3 225 56.0
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 2.2e-57 226.9 274 47.8
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 1.9e-56 223.8 271 46.5
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 2.1e-55 220.3 280 45.7
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 3.9e-54 216.1 277 45.1
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 7.3e-53 211.8 320 43.8
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 9.5e-53 211.5 258 44.2
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 1.6e-52 210.7 247 49.8
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 3.1e-51 206.5 263 46.4
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 1.2e-50 204.5 287 44.6
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 7.6e-50 201.8 222 49.5
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 4.9e-49 199.1 271 40.6
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 1.2e-42 177.9 171 56.1
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-42 177.6 193 53.9
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 2.0e-42 177.2 195 50.3
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.7e-41 174.1 243 44.0
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.6e-39 166.0 118 72.0
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 3.0e-38 163.3 130 69.2
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 8.7e-38 161.8 222 41.9
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 1.6e-36 157.5 272 40.4
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.2e-36 155.6 179 51.4
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.2e-36 155.6 179 51.4
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 9.0e-35 151.8 178 51.7
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 2.4e-32 143.7 204 46.6
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 2.1e-31 140.6 174 46.0
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 1.5e-29 134.4 164 49.4
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 1.9e-29 134.0 204 44.6
SMO356G0523 Selaginella moellendorffii HOM05D005448 ORTHO05D006405 9.0e-27 125.2 253 33.2
Carub.0006s0684 Capsella rubella HOM05D005448 ORTHO05D006405 1.5e-26 124.4 177 42.4
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 4.9e-25 119.4 148 44.6
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.3e-24 115.2 193 43.0
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 9.3e-24 115.2 193 43.0
FvH4_5g14150 Fragaria vesca HOM05D005448 ORTHO05D006405 1.6e-23 114.4 123 48.0
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 8.7e-22 108.6 148 50.0
Pp3c17_6410 Physcomitrium patens HOM05D005448 ORTHO05D006405 1.1e-21 108.2 218 36.2
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 2.5e-21 107.1 207 36.7
CBR_g39231 Chara braunii HOM05D005448 ORTHO05D006405 2.8e-20 103.6 171 38.0
BolC9t59642H Brassica oleracea HOM05D005448 ORTHO05D006405 5.8e-18 95.9 65 67.7
VMungo1215G1798 Vigna mungo HOM05D005448 ORTHO05D006405 1.3e-17 94.7 78 60.3
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.9e-17 93.6 135 49.6
HPP92_004728 Vanilla planifolia HOM05D005448 ORTHO05D006405 4.6e-15 86.3 130 38.5
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 3.0e-14 83.6 67 62.7
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 3.0e-14 83.6 67 62.7
GSVIVG01007746001 Vitis vinifera HOM05D005448 ORTHO05D006405 3.0e-14 83.6 65 66.2
Glyma.17G077251 Glycine max HOM05D005448 ORTHO05D006405 3.7e-12 76.6 102 42.2
SEGI_09353 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 6.3e-12 75.9 78 50.0
VMungo0464G0610 Vigna mungo HOM05D005448 ORTHO05D006405 1.8e-11 74.3 80 45.0
VMungo0647G2219 Vigna mungo HOM05D005448 ORTHO05D006405 3.2e-08 63.5 173 28.3
GSVIVG01007748001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.0e-06 58.5 62 53.2
Actinidia19002 Actinidia chinensis HOM05D005448 ORTHO05D006405 3.0e-06 57.0 64 50.0
BolC2t09494H Brassica oleracea HOM05D005448 ORTHO05D006405 8.7e-06 55.5 75 50.7


User provided reference genes

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