Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 0.0e+00 1100.1 584 100.0
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 5.6e-163 578.6 622 60.0
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 9.8e-160 567.8 617 59.3
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 2.0e-152 543.5 616 56.5
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 3.4e-152 542.7 618 56.3
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 7.3e-147 525.0 630 56.8
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 7.3e-147 525.0 619 54.4
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 2.5e-139 500.0 651 52.2
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 1.1e-129 468.0 599 51.1
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 1.2e-128 464.5 636 51.6
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 9.9e-128 461.5 637 52.4
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 2.2e-127 460.3 600 51.7
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 8.4e-127 458.4 600 52.0
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 7.1e-126 455.3 600 51.8
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 1.2e-125 454.5 636 51.3
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 6.6e-124 448.7 633 50.7
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.1e-121 441.4 632 50.0
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 1.3e-114 417.9 628 50.6
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 1.9e-110 404.1 626 49.8
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 2.8e-106 390.2 627 48.0
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.1e-105 388.3 624 46.6
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 6.9e-105 385.6 627 46.9
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 8.4e-103 378.6 624 48.6
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 9.7e-99 365.2 601 46.8
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 1.3e-87 328.2 367 58.9
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 7.2e-78 295.8 713 37.4
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 9.4e-78 295.4 684 37.6
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 1.2e-77 295.0 716 35.5
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 1.9e-70 271.2 706 36.0
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 9.4e-70 268.9 692 36.3
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 2.7e-69 267.3 690 35.2
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 3.6e-69 266.9 689 35.0
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 1.4e-68 265.0 712 34.7
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 4.0e-68 263.5 698 34.7
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 8.8e-68 262.3 716 35.8
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 2.0e-67 261.2 680 34.4
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 8.3e-66 255.8 714 34.7
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 4.1e-65 253.4 721 34.0
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.0e-63 248.8 721 33.6
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 5.0e-63 246.5 735 34.0
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 5.0e-63 246.5 704 33.0
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 1.6e-61 241.5 713 33.7
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 1.6e-61 241.5 702 32.8
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 1.4e-60 238.4 725 33.2
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 5.2e-60 236.5 689 34.3
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 5.2e-60 236.5 679 34.3
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 1.2e-59 235.3 712 32.0
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 2.6e-59 234.2 247 58.7
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 2.6e-59 234.2 695 33.4
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.2e-58 231.1 754 32.8
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 2.8e-58 230.7 699 33.6
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 8.3e-58 229.2 697 34.0
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 1.8e-57 228.0 598 36.5
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.1e-57 227.3 657 32.9
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 7.0e-57 226.1 678 33.6
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 1.2e-56 225.3 668 33.4
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.0e-56 224.6 667 32.4
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 2.7e-56 224.2 723 32.4
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 3.5e-56 223.8 687 33.6
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 1.0e-55 222.2 723 30.3
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 5.0e-55 219.9 670 33.0
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 3.3e-54 217.2 691 33.0
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 4.3e-54 216.9 714 32.6
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 2.8e-53 214.2 665 32.0
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 6.1e-53 213.0 681 32.0
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 8.0e-53 212.6 648 34.4
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 1.0e-52 212.2 709 32.2
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 5.2e-52 209.9 679 31.2
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 1.2e-51 208.8 746 30.0
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 1.5e-51 208.4 666 32.3
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 2.0e-51 208.0 671 31.9
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 3.4e-51 207.2 664 33.1
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 4.4e-51 206.8 702 30.2
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 4.4e-51 206.8 679 32.4
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 5.7e-51 206.5 672 31.2
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 7.5e-51 206.1 518 35.3
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 9.8e-51 205.7 707 30.6
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 1.7e-50 204.9 625 33.8
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 3.7e-50 203.8 675 31.3
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 9.2e-49 199.1 698 31.8
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 2.0e-48 198.0 705 32.1
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 2.7e-48 197.6 648 34.0
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 2.7e-48 197.6 682 31.4
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 4.6e-48 196.8 655 32.8
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 7.8e-48 196.1 673 32.1
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 1.7e-47 194.9 687 31.4
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 2.3e-47 194.5 695 31.5
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 3.0e-47 194.1 622 32.6
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 6.6e-47 193.0 600 31.5
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 6.6e-47 193.0 701 31.4
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 8.6e-47 192.6 699 31.0
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.9e-46 191.4 687 31.1
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 1.9e-46 191.4 813 28.4
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 3.3e-46 190.7 701 31.1
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 1.2e-45 188.7 681 31.0
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 2.1e-45 188.0 718 28.7
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 1.0e-44 185.7 403 37.2
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 8.9e-44 182.6 592 32.8
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 8.9e-44 182.6 713 29.3
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 8.9e-44 182.6 677 29.4
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 4.4e-43 180.3 714 29.3
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 7.5e-43 179.5 700 29.7
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.3e-42 178.7 562 31.9
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 1.7e-42 178.3 534 31.5
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 2.2e-42 177.9 653 30.0
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 4.9e-42 176.8 618 30.4
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 4.9e-42 176.8 538 32.2
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 6.4e-42 176.4 603 30.8
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 8.3e-42 176.0 680 29.4
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 8.3e-42 176.0 679 29.3
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 1.4e-41 175.3 711 29.0
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 1.4e-41 175.3 671 31.1
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 1.9e-41 174.9 600 30.5
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 1.9e-41 174.9 627 30.5
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 3.2e-41 174.1 652 30.5
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 1.0e-39 169.1 695 28.1
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 5.0e-39 166.8 712 28.7
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 1.9e-38 164.9 463 34.6
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 2.5e-38 164.5 639 28.6
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 5.6e-38 163.3 526 31.9
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 3.6e-37 160.6 685 29.5
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 6.2e-37 159.8 670 29.0
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 1.1e-36 159.1 675 28.0
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 1.4e-36 158.7 554 31.9
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 1.8e-36 158.3 644 28.1
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 4.0e-36 157.1 665 28.6
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 8.9e-36 156.0 686 29.0
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 1.5e-35 155.2 672 28.6
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 2.0e-35 154.8 376 37.0
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 1.9e-33 148.3 503 30.2
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 7.1e-33 146.4 550 31.1
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 1.6e-32 145.2 395 33.9
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 2.1e-32 144.8 698 27.9
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 3.9e-31 140.6 480 33.3
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 3.9e-31 140.6 477 31.0
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 5.1e-31 140.2 392 31.6
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 3.6e-29 134.0 355 35.2
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 1.8e-28 131.7 709 26.5
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 3.1e-28 131.0 478 29.9
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 1.5e-27 128.6 479 30.3
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 2.6e-27 127.9 479 30.3
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 1.3e-26 125.6 406 30.8
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 5.4e-25 120.2 509 29.3
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 1.7e-23 115.2 673 27.0
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 3.9e-23 114.0 392 30.9
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 1.5e-22 112.1 229 41.0
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 2.5e-22 111.3 490 28.4
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 2.1e-21 108.2 477 28.5
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 1.1e-20 105.9 506 27.5
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 5.2e-20 103.6 532 28.8
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 6.8e-20 103.2 255 36.1
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 6.8e-20 103.2 251 34.3
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 1.2e-19 102.4 485 28.7
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 2.6e-19 101.3 761 24.3
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 2.6e-19 101.3 757 24.2
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 2.6e-19 101.3 217 37.8
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 7.6e-19 99.8 440 27.5
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 2.9e-18 97.8 224 37.5
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 1.1e-17 95.9 361 29.9
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 4.2e-17 94.0 410 29.8
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 7.1e-17 93.2 237 35.4
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 2.1e-16 91.7 434 27.2
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 2.1e-16 91.7 214 38.8
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 2.7e-16 91.3 226 36.3
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 6.0e-16 90.1 534 27.0
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.0e-15 89.4 204 38.2
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 2.3e-15 88.2 282 31.9
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 6.6e-15 86.7 564 24.8
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.5e-14 85.5 190 38.4
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 5.6e-14 83.6 529 24.8
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 1.3e-13 82.4 428 28.3
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 1.6e-13 82.0 301 31.6
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 2.8e-13 81.3 196 38.3
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 8.1e-13 79.7 269 29.7
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 1.2e-11 75.9 531 24.5
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 3.8e-10 70.9 208 34.1
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 1.9e-09 68.6 666 25.1
C06p31970 Brassica napus HOM05D023672 ORTHO05D024296 2.3e-07 61.6 63 49.2
BolC6t38324H Brassica oleracea HOM05D023672 ORTHO05D024296 2.3e-07 61.6 63 49.2
MBI16_g36263_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 7.4e-06 56.6 469 22.4


User provided reference genes

Program Settings