Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 0.0e+00 1476.1 758 100.0
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 1.3e-308 1062.8 774 74.3
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 1.0e-305 1053.1 772 74.0
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 3.8e-305 1051.2 777 73.5
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 2.5e-304 1048.5 781 72.9
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 9.4e-296 1020.0 777 71.6
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 6.3e-292 1007.3 788 70.2
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 1.1e-291 1006.5 769 70.9
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 1.4e-291 1006.1 776 70.6
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 3.1e-291 1005.0 778 70.7
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 2.0e-290 1002.3 777 70.8
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.7e-289 999.2 769 70.4
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 3.8e-281 971.5 775 68.9
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 6.8e-278 960.7 765 68.9
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 4.1e-275 951.4 765 68.5
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 4.7e-263 911.4 768 64.8
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.3e-220 770.4 555 74.1
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 1.0e-209 734.2 779 52.2
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 1.2e-205 720.7 779 51.9
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 4.9e-204 715.3 766 51.2
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 1.8e-198 696.8 786 50.9
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.7e-196 690.3 774 49.4
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 5.0e-196 688.7 770 50.9
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.4e-195 687.2 781 50.7
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 5.5e-195 685.3 765 51.1
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 1.0e-193 681.0 779 50.7
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 8.7e-193 677.9 776 51.0
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.9e-192 676.8 776 49.0
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 4.8e-191 672.2 770 49.0
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 1.3e-188 664.1 778 48.7
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 2.5e-187 659.8 769 49.8
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 7.2e-187 658.3 775 48.4
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 1.2e-186 657.5 775 48.3
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 3.6e-186 656.0 766 49.6
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 4.6e-186 655.6 778 50.5
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 1.0e-185 654.4 764 49.7
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 3.9e-185 652.5 778 50.4
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 7.4e-184 648.3 775 49.4
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 7.4e-184 648.3 768 49.2
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.3e-183 647.5 765 49.8
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 2.8e-183 646.4 782 48.3
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 2.4e-182 643.3 781 48.5
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 4.1e-182 642.5 766 48.6
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 1.5e-181 640.6 766 48.6
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 2.6e-181 639.8 766 47.9
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 4.5e-181 639.0 780 47.6
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 4.5e-181 639.0 781 47.2
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 7.7e-181 638.3 765 48.2
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 1.7e-180 637.1 771 48.2
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 1.7e-180 637.1 768 48.6
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 1.6e-178 630.6 771 48.4
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 2.7e-178 629.8 777 48.6
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 4.7e-178 629.0 777 47.7
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 6.1e-178 628.6 785 47.9
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.4e-177 627.5 780 47.6
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 4.8e-175 619.0 776 47.3
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.1e-174 617.8 808 45.0
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.1e-174 617.8 769 47.6
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.5e-173 612.8 764 48.0
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 2.9e-172 609.8 766 46.7
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 2.9e-172 609.8 768 46.5
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.9e-171 607.1 769 47.2
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 4.2e-171 605.9 763 46.3
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.5e-171 605.5 766 46.0
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 3.6e-170 602.8 760 46.4
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 8.0e-170 601.7 766 46.0
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 1.4e-169 600.9 773 47.2
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.8e-169 600.5 765 46.3
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.3e-169 600.1 788 46.3
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.7e-168 595.5 766 46.0
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 2.8e-167 593.2 767 45.2
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 3.7e-167 592.8 633 51.5
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 3.7e-167 592.8 762 46.3
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.8e-166 590.5 788 45.8
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 5.0e-164 582.4 801 43.3
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 1.1e-163 581.3 787 45.9
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.9e-163 580.5 793 44.8
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 4.2e-163 579.3 770 44.0
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 8.0e-162 575.1 768 45.3
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 5.2e-161 572.4 764 43.8
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 2.0e-160 570.5 645 50.5
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 1.7e-159 567.4 765 44.4
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 6.3e-159 565.5 761 44.5
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.1e-158 564.7 768 43.9
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 9.1e-158 561.6 765 43.4
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 7.7e-157 558.5 767 43.4
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.3e-156 557.8 787 44.1
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 5.0e-156 555.8 789 44.4
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 5.5e-155 552.4 755 44.2
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 9.4e-155 551.6 781 43.3
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.6e-154 550.8 798 42.6
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 6.8e-153 545.4 784 44.0
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 9.8e-152 541.6 649 48.4
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 2.2e-151 540.4 785 42.7
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 3.7e-151 539.7 769 42.1
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.4e-150 537.7 787 43.3
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 3.1e-150 536.6 642 48.0
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 5.4e-150 535.8 788 43.0
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 2.7e-149 533.5 739 44.8
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 5.9e-149 532.3 774 41.9
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 3.4e-144 516.5 730 42.7
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 4.1e-142 509.6 681 43.3
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 2.7e-141 506.9 764 41.6
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 6.6e-140 502.3 768 40.1
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 8.0e-138 495.4 726 42.0
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 1.0e-137 495.0 825 40.4
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.3e-137 493.8 763 40.1
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 5.2e-137 492.7 638 46.1
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 2.0e-133 480.7 574 48.8
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 1.9e-131 474.2 681 41.9
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 9.8e-128 461.8 762 39.4
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 1.3e-127 461.5 657 45.5
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 6.4e-119 432.6 712 39.3
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.9e-116 423.3 736 38.5
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 2.4e-113 414.1 820 34.9
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.6e-98 364.8 868 32.0
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.8e-97 361.3 802 34.7
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 8.4e-95 352.4 784 35.1
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.6e-93 348.2 797 32.9
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 4.6e-93 346.7 770 33.9
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 5.5e-70 270.0 550 32.9
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.8e-68 265.0 782 30.2
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 2.8e-66 257.7 613 32.3
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.9e-63 247.7 539 32.7
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.3e-58 232.3 133 85.0
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 6.1e-53 213.4 446 33.9
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 3.7e-50 204.1 678 26.4
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 6.5e-39 166.8 312 34.0
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.8e-34 151.4 157 49.7
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 4.1e-33 147.5 255 36.5
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.2e-32 146.0 264 34.1
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 5.0e-31 140.6 176 46.6
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 1.5e-30 139.0 99 70.7
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 9.5e-30 136.3 95 66.3
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.3e-28 131.7 211 37.4
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 4.4e-27 127.5 158 44.9
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 8.3e-26 123.2 103 61.2
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 1.8e-20 105.5 126 39.7
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 3.9e-15 87.8 114 45.6
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 1.8e-12 79.0 98 45.9
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 3.4e-11 74.7 253 31.2
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 2.2e-10 72.0 431 23.0
PSO339G1313 Papaver somniferum HOM05D001312 ORTHO05D001832 7.1e-09 67.0 173 31.8
PSO063G1518 Papaver somniferum HOM05D001312 ORTHO05D001832 1.6e-08 65.9 193 31.1
Lalb_Chr20g0121581 Lupinus albus HOM05D001439 ORTHO05D002726 4.3e-06 57.8 167 29.3
unitig_27.g24975 Utricularia gibba HOM05D001439 ORTHO05D002726 7.3e-06 57.0 87 42.5
VMungo0540G1437 Vigna mungo HOM05D001439 ORTHO05D002726 7.3e-06 57.0 128 32.0
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 9.5e-06 56.6 223 26.9


User provided reference genes

Program Settings