Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 1.5e-179 632.9 358 100.0
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 1.1e-105 387.5 368 66.3
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 1.5e-105 387.1 364 68.4
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 1.6e-104 383.6 363 68.9
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 4.7e-104 382.1 365 66.8
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 2.0e-102 376.7 362 67.4
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 2.0e-102 376.7 365 66.3
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 4.5e-99 365.5 362 64.6
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 9.5e-97 357.8 352 66.2
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 6.1e-96 355.1 345 66.7
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 5.0e-90 335.5 404 56.4
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 8.6e-90 334.7 340 64.7
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 2.5e-89 333.2 339 62.5
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 8.0e-80 301.6 422 50.5
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 8.9e-79 298.1 422 50.2
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 9.8e-78 294.7 422 50.0
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 2.2e-77 293.5 421 48.5
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 4.1e-76 289.3 416 50.2
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 9.2e-76 288.1 416 50.0
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.6e-75 287.3 418 47.6
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 1.6e-75 287.3 412 50.0
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 1.3e-74 284.3 414 49.0
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 1.3e-74 284.3 421 48.7
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 1.7e-74 283.9 408 49.3
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 6.6e-74 282.0 388 52.1
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 9.5e-73 278.1 415 48.9
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 1.6e-72 277.3 416 48.6
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 2.1e-72 276.9 420 47.6
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 2.1e-72 276.9 423 48.2
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 8.1e-72 275.0 329 53.2
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.4e-71 274.2 420 47.1
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 2.3e-71 273.5 424 47.9
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 4.0e-71 272.7 401 50.9
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 8.9e-71 271.6 422 47.6
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 1.2e-70 271.2 416 49.0
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 4.4e-70 269.2 328 52.4
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 4.4e-70 269.2 372 46.0
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 5.8e-70 268.9 406 48.5
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 4.9e-69 265.8 411 48.2
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 4.9e-69 265.8 422 48.1
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 4.9e-69 265.8 377 52.0
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 8.3e-69 265.0 404 49.0
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 8.3e-69 265.0 375 51.5
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 1.4e-68 264.2 328 51.5
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 9.2e-68 261.5 405 49.6
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 1.2e-67 261.2 420 46.7
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 1.6e-67 260.8 401 48.9
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 1.6e-67 260.8 397 46.1
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 1.7e-66 257.3 379 50.9
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 3.9e-66 256.1 416 47.4
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 1.5e-65 254.2 419 46.3
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 1.5e-65 254.2 400 48.8
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 2.5e-65 253.4 415 45.3
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 9.5e-65 251.5 429 45.5
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 9.5e-65 251.5 406 47.0
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 3.6e-64 249.6 412 47.1
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 3.6e-64 249.6 376 48.4
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 1.1e-63 248.1 417 46.3
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 2.4e-63 246.9 388 43.6
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 5.2e-63 245.7 436 43.3
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 8.9e-63 245.0 374 45.5
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 8.9e-63 245.0 293 52.9
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 2.6e-62 243.4 326 53.1
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 2.6e-62 243.4 330 48.8
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 3.4e-62 243.0 374 44.7
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 1.7e-61 240.7 324 47.5
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 1.7e-61 240.7 417 42.4
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 3.8e-61 239.6 371 48.2
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 1.4e-60 237.7 396 46.7
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.4e-60 236.9 377 49.3
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 2.4e-60 236.9 376 42.0
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 4.2e-60 236.1 344 50.0
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 4.2e-60 236.1 396 46.5
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 4.2e-60 236.1 393 46.6
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 1.6e-59 234.2 389 46.8
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 4.6e-59 232.6 328 47.0
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 1.0e-58 231.5 374 49.2
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 2.5e-57 226.9 431 41.8
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 5.6e-57 225.7 323 47.7
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 1.2e-56 224.6 259 55.6
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 2.6e-54 216.9 389 39.6
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 4.4e-54 216.1 265 48.3
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 5.8e-54 215.7 433 39.0
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 5.8e-54 215.7 377 46.7
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 9.9e-54 214.9 387 45.2
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 1.3e-53 214.5 296 47.0
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 2.9e-53 213.4 364 45.9
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 1.4e-52 211.1 385 44.9
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 1.9e-52 210.7 254 51.2
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 2.4e-52 210.3 363 42.1
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 4.2e-52 209.5 380 42.9
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.0e-50 203.4 401 44.4
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.0e-50 203.4 401 43.4
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 6.6e-50 202.2 391 45.0
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 1.1e-49 201.4 367 44.7
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.5e-49 200.3 339 44.0
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 1.6e-48 197.6 392 42.6
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.6e-48 197.6 230 50.0
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.8e-48 196.1 389 43.2
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 1.8e-47 194.1 388 44.6
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 1.2e-46 191.4 389 38.8
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 2.6e-46 190.3 232 50.0
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 1.7e-45 187.6 356 42.1
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 2.2e-45 187.2 372 42.5
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 2.1e-43 180.6 390 40.0
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 3.5e-43 179.9 266 45.5
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 7.9e-43 178.7 338 39.6
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 3.9e-42 176.4 403 40.2
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 5.1e-42 176.0 320 41.6
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 8.7e-42 175.3 409 36.7
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 7.4e-41 172.2 264 45.8
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 1.3e-40 171.4 325 40.3
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 3.7e-40 169.9 240 46.2
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 1.5e-38 164.5 234 43.2
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 1.7e-37 161.0 339 41.0
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 3.0e-34 150.2 320 36.9
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 3.1e-31 140.2 238 41.2
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 6.9e-31 139.0 271 38.4
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 6.7e-26 122.5 367 37.1
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 2.5e-25 120.6 267 35.2
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 2.4e-23 114.0 104 58.7
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.9e-19 99.0 226 41.2
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.4e-18 98.2 164 49.4
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 7.4e-17 92.4 88 53.4
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 3.7e-16 90.1 72 68.1
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 1.2e-14 85.1 164 38.4
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 2.0e-14 84.3 177 39.5
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 1.7e-13 81.3 147 40.8
BcaC05g24776 Brassica carinata HOM05D004981 ORTHO05D005635 3.6e-11 73.6 61 57.4
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.9e-11 72.4 90 51.1
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 6.7e-10 69.3 215 28.4
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 2.6e-09 67.4 137 37.2
Hund06385 Selenicereus undatus HOM05D004981 ORTHO05D005635 1.3e-08 65.1 93 50.5
BolC7t41892H Brassica oleracea HOM05D004981 ORTHO05D042093 1.7e-08 64.7 99 47.5
BolC5t29476H Brassica oleracea HOM05D004981 ORTHO05D005635 2.2e-08 64.3 54 55.6
BraA08t32917Z Brassica rapa HOM05D004981 ORTHO05D005635 1.4e-07 61.6 105 44.8
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 2.0e-06 57.8 101 39.6
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.0e-06 57.8 140 35.7


User provided reference genes

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