Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.8e-194 681.8 352 100.0
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 1.3e-162 576.6 342 87.1
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 1.1e-161 573.5 342 86.8
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 5.4e-161 571.2 342 86.0
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 6.5e-159 564.3 342 85.4
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 2.5e-158 562.4 342 85.4
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 2.8e-154 548.9 345 83.8
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 9.1e-153 543.9 343 84.3
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 3.5e-152 542.0 343 83.7
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 2.9e-151 538.9 343 83.4
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 6.1e-149 531.2 343 82.8
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.7e-146 523.1 345 80.0
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 2.9e-146 522.3 345 79.7
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 2.9e-146 522.3 345 79.7
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 4.1e-145 518.5 343 80.2
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 2.9e-143 512.3 345 79.4
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 5.2e-140 501.5 348 77.3
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 1.4e-121 440.3 346 67.3
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 3.0e-119 432.6 350 66.6
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 4.3e-118 428.7 348 66.1
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.6e-117 426.8 327 70.3
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.6e-117 426.8 327 70.3
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.6e-117 426.8 327 70.3
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 3.6e-117 425.6 336 66.4
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 4.7e-117 425.2 327 69.1
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 6.2e-117 424.9 321 69.5
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.4e-116 423.7 326 68.1
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 1.4e-116 423.7 321 68.5
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.8e-116 423.3 329 67.5
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.4e-116 422.9 327 70.0
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 4.0e-116 422.2 321 68.5
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 2.0e-115 419.9 328 66.8
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 3.4e-115 419.1 327 66.7
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 3.4e-115 419.1 321 67.9
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 1.7e-114 416.8 325 68.0
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 6.4e-114 414.8 346 65.9
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 6.4e-114 414.8 326 66.9
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 8.4e-114 414.5 324 67.6
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 2.4e-113 412.9 321 67.3
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 7.1e-113 411.4 345 64.6
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 2.1e-112 409.8 345 64.1
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.3e-111 407.1 321 66.7
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 2.3e-111 406.4 346 64.2
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 3.0e-111 406.0 332 64.8
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 5.1e-111 405.2 329 66.0
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.9e-110 403.3 331 64.0
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 9.6e-110 401.0 332 66.3
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.3e-109 400.6 320 65.6
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 8.1e-109 397.9 397 56.4
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 1.4e-108 397.1 320 65.3
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.8e-108 396.7 342 61.7
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.8e-108 396.7 320 65.6
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 6.9e-108 394.8 345 61.2
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 6.9e-108 394.8 327 61.8
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 2.6e-107 392.9 380 57.1
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 7.6e-107 391.3 322 63.4
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 7.6e-107 391.3 321 63.2
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.4e-105 387.1 324 62.7
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 2.4e-105 386.3 318 64.2
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 3.2e-105 386.0 346 62.1
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 9.3e-105 384.4 344 59.9
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 2.1e-104 383.3 351 60.1
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 2.7e-104 382.9 348 59.5
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 3.5e-104 382.5 342 61.1
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 6.0e-104 381.7 320 62.5
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 7.9e-104 381.3 342 59.9
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 6.6e-103 378.3 320 61.6
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 6.6e-103 378.3 323 61.0
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 8.7e-103 377.9 342 60.5
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.1e-102 377.5 374 59.4
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 5.6e-102 375.2 324 61.4
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 9.6e-102 374.4 346 59.8
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 3.6e-101 372.5 340 58.8
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 8.1e-101 371.3 347 58.8
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 1.4e-100 370.5 347 59.1
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 3.1e-100 369.4 323 61.9
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 4.0e-100 369.0 318 60.7
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 6.9e-100 368.2 338 60.9
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 9.0e-100 367.9 321 61.7
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 1.5e-99 367.1 331 60.1
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 3.4e-99 365.9 304 64.8
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 5.8e-99 365.2 341 59.5
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 5.8e-99 365.2 330 59.1
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 9.9e-99 364.4 367 55.0
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.9e-98 362.1 283 69.3
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 6.4e-98 361.7 319 62.4
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 5.5e-97 358.6 297 63.0
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.2e-96 357.5 325 60.3
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.6e-96 357.1 333 58.3
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.7e-96 356.3 309 61.5
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 7.9e-96 354.8 341 57.8
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.0e-95 354.4 283 68.9
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 1.0e-95 354.4 334 57.5
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 3.0e-95 352.8 228 79.4
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 1.1e-94 350.9 324 59.0
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 7.4e-94 348.2 328 58.8
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.5e-91 340.5 280 64.3
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.5e-91 340.5 330 56.4
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 5.8e-91 338.6 330 55.5
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 2.2e-90 336.7 354 54.8
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 7.1e-89 331.6 281 61.9
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 6.0e-88 328.6 311 60.5
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 2.3e-87 326.6 294 60.9
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.0e-87 326.2 251 67.7
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 4.1e-84 315.8 332 55.4
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.5e-83 313.9 330 52.4
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 2.5e-81 306.6 323 54.8
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.7e-74 283.9 337 52.2
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 7.2e-73 278.5 254 59.1
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.2e-58 230.3 299 48.2
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 3.5e-51 206.5 349 39.8
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 3.8e-50 203.0 129 78.3
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 1.4e-47 194.5 343 38.2
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 8.8e-47 191.8 126 74.6
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 4.5e-43 179.5 121 71.9
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 8.0e-40 168.7 140 65.7
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 1.8e-36 157.5 247 40.5
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 1.7e-34 151.0 112 77.7
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 6.6e-34 149.1 336 31.2
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.1e-28 131.7 93 72.0
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 5.8e-22 109.4 101 59.4
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.0e-18 98.6 78 64.1
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 3.3e-17 93.6 86 55.8
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 2.0e-14 84.3 152 36.2
Aa31sc80G40 Aethionema arabicum HOM05D005892 ORTHO05D007364 6.0e-11 72.8 87 51.7
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 4.0e-07 60.1 92 41.3


User provided reference genes

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