Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G16350 Aethionema arabicum HOM05D007824 ORTHO05D009875 6.7e-69 263.8 129 100.0
CARHR202570 Cardamine hirsuta HOM05D007824 ORTHO05D009875 4.9e-19 98.2 50 92.0
Thhalv10015471m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 4.9e-19 98.2 50 92.0
AL6G21300 Arabidopsis lyrata HOM05D007824 ORTHO05D009875 9.2e-18 94.0 52 90.4
Carub.0006s0922 Capsella rubella HOM05D007824 ORTHO05D009875 2.7e-17 92.4 52 86.5
AT5G10745 Arabidopsis thaliana HOM05D007824 ORTHO05D009875 4.6e-17 91.7 52 88.5
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 4.6e-17 91.7 50 88.0
BcaB01g06276 Brassica carinata HOM05D007824 ORTHO05D009875 5.9e-17 91.3 52 86.5
BcaB01g05502 Brassica carinata HOM05D007824 ORTHO05D009875 1.1e-15 87.0 52 84.6
A03p04740 Brassica napus HOM05D007824 ORTHO05D009875 1.1e-15 87.0 52 84.6
C03p05450 Brassica napus HOM05D007824 ORTHO05D009875 1.1e-15 87.0 52 84.6
BraA03t09814Z Brassica rapa HOM05D007824 ORTHO05D009875 1.1e-15 87.0 52 84.6
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 1.8e-13 79.7 51 78.4
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.3e-13 79.3 51 78.4
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.3e-13 79.3 51 78.4
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 4.0e-13 78.6 43 83.7
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 6.8e-13 77.8 51 74.5
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 1.2e-12 77.0 50 70.0
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 1.5e-12 76.6 51 74.5
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 7.5e-12 74.3 51 70.6
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 9.8e-12 73.9 51 70.6
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 1.3e-11 73.6 48 68.8
Gorai.009G065300 Gossypium raimondii HOM05D007824 ORTHO05D009875 1.3e-11 73.6 51 70.6
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 3.7e-11 72.0 54 64.8
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 1.4e-10 70.1 58 58.6
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 1.4e-10 70.1 54 61.1
Zm00001eb221680 Zea mays HOM05D007824 ORTHO05D009875 1.4e-10 70.1 64 57.8
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.4e-10 69.3 52 63.5
MD08G1050300 Malus domestica HOM05D007824 ORTHO05D009875 2.4e-10 69.3 46 73.9
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 2.4e-10 69.3 42 76.2
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 3.2e-10 68.9 42 76.2
Thhalv10005256m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 3.2e-10 68.9 39 84.6
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 4.1e-10 68.6 42 73.8
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 5.4e-10 68.2 43 72.1
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 7.0e-10 67.8 54 66.7
Migut.E01438 Erythranthe guttata HOM05D007824 ORTHO05D009875 1.2e-09 67.0 48 60.4
CSS0021115 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.6e-09 66.6 68 52.9
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 1.6e-09 66.6 46 69.6
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 2.0e-09 66.2 48 60.4
BolC7t44808H Brassica oleracea HOM05D061710 ORTHO05D009875 2.7e-09 65.9 66 57.6
Os10g0478900 Oryza sativa ssp. japonica HOM05D007824 ORTHO05D009875 2.7e-09 65.9 44 72.7
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 2.7e-09 65.9 52 59.6
CSS0035617 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 3.5e-09 65.5 68 52.9
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 4.6e-09 65.1 52 61.5
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 4.6e-09 65.1 46 69.6
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 4.6e-09 65.1 43 67.4
unitig_46.g18221 Utricularia gibba HOM05D007824 ORTHO05D009875 4.6e-09 65.1 60 46.7
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 6.0e-09 64.7 43 65.1
Glyma.04G059451 Glycine max HOM05D007824 ORTHO05D009875 7.8e-09 64.3 57 59.6
Sed0001567 Sechium edule HOM05D007824 ORTHO05D009875 1.0e-08 63.9 52 59.6
Aa31LG11G4150 Aethionema arabicum HOM05D007824 ORTHO05D009875 1.3e-08 63.5 36 83.3
AT5G24980 Arabidopsis thaliana HOM05D007824 ORTHO05D009875 1.3e-08 63.5 39 76.9
CSS0008945 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.3e-08 63.5 68 51.5
AL6G36640 Arabidopsis lyrata HOM05D007824 ORTHO05D009875 1.7e-08 63.2 36 80.6
Atru.chr7.2598 Acer truncatum HOM05D007824 ORTHO05D009875 3.0e-08 62.4 46 69.6
C07p42800 Brassica napus HOM05D007824 ORTHO05D009875 3.0e-08 62.4 36 80.6
BraA06t26498Z Brassica rapa HOM05D007824 ORTHO05D009875 3.0e-08 62.4 36 80.6
CSS0041715 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 3.0e-08 62.4 67 49.3
Carub.0006s2284 Capsella rubella HOM05D007824 ORTHO05D009875 3.0e-08 62.4 36 77.8
Phvul.009G085600 Phaseolus vulgaris HOM05D007824 ORTHO05D009875 3.9e-08 62.0 49 61.2
Lalb_Chr08g0244541 Lupinus albus HOM05D007824 ORTHO05D009875 8.6e-08 60.8 53 60.4
ClCG08G013840 Citrullus lanatus HOM05D007824 ORTHO05D009875 1.1e-07 60.5 48 54.2
CSS0044029 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.9e-07 59.7 68 48.5
Glyma.06G059900 Glycine max HOM05D007824 ORTHO05D009875 2.5e-07 59.3 48 60.4
Lj5g0022212 Lotus japonicus HOM05D007824 ORTHO05D009875 4.3e-07 58.5 52 57.7
MD15G1044500 Malus domestica HOM05D007824 ORTHO05D009875 5.6e-07 58.2 41 61.0
Sed0025799 Sechium edule HOM05D007824 ORTHO05D009875 5.6e-07 58.2 42 59.5
Glyma.17G221200 Glycine max HOM05D007824 ORTHO05D009875 7.3e-07 57.8 48 58.3
Medtr1g013350 Medicago truncatula HOM05D007824 ORTHO05D009875 2.1e-06 56.2 39 64.1
Glyma.14G104600 Glycine max HOM05D007824 ORTHO05D009875 3.6e-06 55.5 44 56.8
Medtr3g105765 Medicago truncatula HOM05D007824 ORTHO05D009875 4.7e-06 55.1 53 54.7


User provided reference genes

Program Settings