Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G16230 Aethionema arabicum HOM05D005497 ORTHO05D006733 3.1e-185 651.7 355 100.0
AL6G21450 Arabidopsis lyrata HOM05D005497 ORTHO05D006733 1.5e-91 340.5 356 62.4
Carub.0006s0938 Capsella rubella HOM05D005497 ORTHO05D006733 1.1e-84 317.8 363 60.3
AT5G10890 Arabidopsis thaliana HOM05D005497 ORTHO05D006733 3.5e-83 312.8 357 58.0
BcaNung01901 Brassica carinata HOM05D005497 ORTHO05D006733 9.4e-81 304.7 348 59.8
Thhalv10014215m.g Eutrema salsugineum HOM05D005497 ORTHO05D006733 2.8e-77 293.1 308 63.0
BolC2t06432H Brassica oleracea HOM05D005497 ORTHO05D006733 7.7e-75 285.0 359 53.8
BcaC03g13338 Brassica carinata HOM05D001770 ORTHO05D006733 1.9e-73 280.4 358 53.4
C02p04730 Brassica napus HOM05D005497 ORTHO05D006733 3.2e-73 279.6 359 53.8
A02p00730 Brassica napus HOM05D005497 ORTHO05D006733 1.2e-70 271.2 360 55.3
BraA02t05058Z Brassica rapa HOM05D005497 ORTHO05D006733 1.2e-70 271.2 360 55.3
CARHR202400 Cardamine hirsuta HOM05D005497 ORTHO05D006733 2.8e-64 250.0 355 54.9
THA.LOC104799021 Tarenaya hassleriana HOM05D005497 ORTHO05D006733 2.8e-61 240.0 377 46.4
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 4.9e-61 239.2 356 51.1
BolC9t59416H Brassica oleracea HOM05D005497 ORTHO05D006733 7.3e-57 225.3 358 50.6
C09p65930 Brassica napus HOM05D000238 ORTHO05D002998 1.5e-54 217.6 358 49.7
BcaNung01902 Brassica carinata HOM05D000115 ORTHO05D006733 3.0e-50 203.4 251 59.0
BcaC04g19279 Brassica carinata HOM05D001339 ORTHO05D002998 4.4e-46 189.5 359 47.1
TWI32G0158 Tripterygium wilfordii HOM05D005497 ORTHO05D006733 1.5e-30 137.9 370 33.5
A10p26790 Brassica napus HOM05D000238 ORTHO05D001043 1.7e-29 134.4 133 57.9
Manes.16G129200 Manihot esculenta HOM05D005497 ORTHO05D006733 3.6e-24 116.7 357 30.8
Haze_21422 Corylus avellana HOM05D005497 ORTHO05D006733 4.0e-23 113.2 360 30.8
Sabra18G0021900 Salix brachista HOM05D005497 ORTHO05D006733 3.4e-22 110.2 355 29.6
MELO3C016964.2 Cucumis melo HOM05D005497 ORTHO05D006733 1.3e-21 108.2 356 28.4
arahy.Tifrunner.gnm1.ann1.FJBE5X Arachis hypogaea HOM05D005497 ORTHO05D006733 2.9e-21 107.1 346 29.2
Hma1.2p1_1284F.1_g272900 Hydrangea macrophylla HOM05D005497 ORTHO05D006733 6.4e-21 105.9 350 29.7
ClCG05G016330 Citrullus lanatus HOM05D005497 ORTHO05D006733 8.4e-21 105.5 334 28.4
arahy.Tifrunner.gnm1.ann1.F9G1S6 Arachis hypogaea HOM05D005497 ORTHO05D006733 1.9e-20 104.4 266 33.1
Potri.018G019400 Populus trichocarpa HOM05D005497 ORTHO05D006733 3.2e-20 103.6 368 27.4
Sed0001000 Sechium edule HOM05D005497 ORTHO05D006733 7.1e-20 102.4 347 28.0
Sp7g29600 Schrenkiella parvula HOM05D005497 ORTHO05D006733 1.6e-19 101.3 340 25.3
Atru.chr7.2544 Acer truncatum HOM05D005497 ORTHO05D006733 6.0e-19 99.4 372 30.6
Gohir.A05G059400 Gossypium hirsutum HOM05D005497 ORTHO05D006733 1.7e-18 97.8 304 31.2
VMungo1309G2451 Vigna mungo HOM05D005497 ORTHO05D006733 2.3e-18 97.4 271 29.9
vmacro11245 Vaccinium macrocarpon HOM05D005497 ORTHO05D006733 3.0e-18 97.1 340 29.4
Glyma.06G061800 Glycine max HOM05D005497 ORTHO05D006733 5.1e-18 96.3 294 29.9
Thecc.09G016200 Theobroma cacao HOM05D005497 ORTHO05D006733 5.1e-18 96.3 362 26.5
QL02p018953 Quercus lobata HOM05D005497 ORTHO05D006733 1.5e-17 94.7 327 29.1
PGR044G0919 Punica granatum HOM05D005497 ORTHO05D006733 1.9e-17 94.4 285 31.9
THA.LOC104803861 Tarenaya hassleriana HOM05D005497 ORTHO05D006733 1.9e-17 94.4 344 25.9
CARHR239720 Cardamine hirsuta HOM05D005497 ORTHO05D006733 3.3e-17 93.6 341 27.0
Glyma.04G061200 Glycine max HOM05D005497 ORTHO05D006733 3.3e-17 93.6 305 29.2
COL.COLO4_18946 Corchorus olitorius HOM05D001770 ORTHO05D001822 2.1e-16 90.9 357 27.5
Gorai.009G062600 Gossypium raimondii HOM05D005497 ORTHO05D006733 2.1e-16 90.9 316 28.5
Gohir.D05G061500 Gossypium hirsutum HOM05D005497 ORTHO05D006733 6.2e-16 89.4 316 28.5
Duzib168G1440 Durio zibethinus HOM05D005497 ORTHO05D006733 1.1e-15 88.6 315 28.9
Carub.0007s0875 Capsella rubella HOM05D005497 ORTHO05D006733 1.4e-15 88.2 331 25.4
RcHm_v2.0_Chr6g0299451 Rosa chinensis HOM05D005497 ORTHO05D006733 4.0e-15 86.7 343 25.9
Cpa.g.sc127.31 Carica papaya HOM05D005497 ORTHO05D006733 6.9e-15 85.9 293 26.6
Medtr3g106030 Medicago truncatula HOM05D005497 ORTHO05D006733 6.9e-15 85.9 273 27.8
PGSC0003DMG400021201 Solanum tuberosum HOM05D005497 ORTHO05D006733 9.0e-15 85.5 339 26.8
Ciclev10008815m.g Citrus clementina HOM05D005497 ORTHO05D006733 1.5e-14 84.7 284 26.1
Phvul.009G087300 Phaseolus vulgaris HOM05D005497 ORTHO05D006733 1.5e-14 84.7 302 27.5
AT4G31805 Arabidopsis thaliana HOM05D005497 ORTHO05D006733 2.6e-14 84.0 343 23.3
Rhsim02G0213400 Rhododendron simsii HOM05D005497 ORTHO05D006733 3.4e-14 83.6 347 27.4
TAR625G1494 Trochodendron aralioides HOM05D005497 ORTHO05D006733 4.5e-14 83.2 361 27.4
Aa31LG2G18440 Aethionema arabicum HOM05D005497 ORTHO05D006733 5.8e-14 82.8 331 25.4
Thhalv10025612m.g Eutrema salsugineum HOM05D005497 ORTHO05D006733 9.9e-14 82.0 346 24.9
MD08G1057500 Malus domestica HOM05D005497 ORTHO05D006733 1.7e-13 81.3 380 26.6
A03p61000 Brassica napus HOM05D005497 ORTHO05D006733 3.8e-13 80.1 332 24.1
BraA03t15141Z Brassica rapa HOM05D005497 ORTHO05D006733 3.8e-13 80.1 332 24.1
Lj1g0009907 Lotus japonicus HOM05D005497 ORTHO05D006733 3.8e-13 80.1 304 27.6
Prupe.1G393300 Prunus persica HOM05D005497 ORTHO05D006733 3.8e-13 80.1 359 26.7
AL7G20200 Arabidopsis lyrata HOM05D005497 ORTHO05D006733 4.9e-13 79.7 341 24.0
Oeu030218.3 Olea europaea HOM05D005497 ORTHO05D006733 4.9e-13 79.7 255 32.2
Nitab4.5_0002964g0010 Nicotiana tabacum HOM05D005497 ORTHO05D006733 6.4e-13 79.3 327 27.8
Actinidia10518 Actinidia chinensis HOM05D005497 ORTHO05D006733 1.4e-12 78.2 260 28.5
Actinidia23103 Actinidia chinensis HOM05D005497 ORTHO05D006733 1.4e-12 78.2 351 25.9
FAN15G1151 Fragaria x ananassa HOM05D005497 ORTHO05D006733 1.9e-12 77.8 332 28.3
BcaNung01497 Brassica carinata HOM05D005497 ORTHO05D006733 2.4e-12 77.4 332 24.4
C07p58900 Brassica napus HOM05D005497 ORTHO05D006733 2.4e-12 77.4 332 24.4
BolC7t46337H Brassica oleracea HOM05D005497 ORTHO05D006733 2.4e-12 77.4 332 24.4
Gohir.A06G101600 Gossypium hirsutum HOM05D005497 ORTHO05D006733 3.2e-12 77.0 135 40.7
PGR044G0855 Punica granatum HOM05D005497 ORTHO05D006733 3.2e-12 77.0 134 39.6
AUR62012481 Chenopodium quinoa HOM05D005497 ORTHO05D006733 5.5e-12 76.3 259 29.7
SalBow4G2467 Salvia bowleyana HOM05D005497 ORTHO05D006733 5.5e-12 76.3 327 25.7
FAN27G2527 Fragaria x ananassa HOM05D005497 ORTHO05D006733 9.3e-12 75.5 332 27.4
Gohir.D06G103600 Gossypium hirsutum HOM05D005497 ORTHO05D006733 9.3e-12 75.5 132 39.4
Sopen02g018670 Solanum pennellii HOM05D005497 ORTHO05D006733 1.6e-11 74.7 337 25.8
Ca_15775_v3 Cicer arietinum L. HOM05D005497 ORTHO05D006733 2.1e-11 74.3 278 27.0
Hund30561 Selenicereus undatus HOM05D005497 ORTHO05D006733 2.7e-11 73.9 126 38.1
EL10Ac2g04114 Beta vulgaris HOM05D005497 ORTHO05D006733 3.5e-11 73.6 259 27.0
FvH4_2g41090 Fragaria vesca HOM05D005497 ORTHO05D006733 3.5e-11 73.6 334 27.8
Manes.16G128200 Manihot esculenta HOM05D005497 ORTHO05D006733 3.5e-11 73.6 159 38.4
AUR62031606 Chenopodium quinoa HOM05D005497 ORTHO05D006733 4.6e-11 73.2 301 28.2
Cfa013061 Carpinus fangiana HOM05D001770 ORTHO05D001822 6.0e-11 72.8 255 31.8
Lalb_Chr08g0244421 Lupinus albus HOM05D005497 ORTHO05D006733 6.0e-11 72.8 301 28.2
Hund30563 Selenicereus undatus HOM05D005497 ORTHO05D006733 6.0e-11 72.8 126 38.1
Actinidia22292 Actinidia chinensis HOM05D005497 ORTHO05D006733 7.9e-11 72.4 356 25.8
MD15G1039900 Malus domestica HOM05D005497 ORTHO05D006733 7.9e-11 72.4 364 25.5
Gorai.010G118600 Gossypium raimondii HOM05D005497 ORTHO05D006733 1.0e-10 72.0 129 40.3
HPP92_015875 Vanilla planifolia HOM05D005497 ORTHO05D004339 1.0e-10 72.0 247 29.6
Nn8g39874 Nelumbo nucifera HOM05D005497 ORTHO05D006733 1.3e-10 71.6 191 31.4
Nitab4.5_0001219g0100 Nicotiana tabacum HOM05D005497 ORTHO05D006733 1.8e-10 71.2 271 26.2
Solyc02g069540.3 Solanum lycopersicum HOM05D005497 ORTHO05D006733 1.8e-10 71.2 259 27.4
Aqoxy2G02176 Aquilegia oxysepala HOM05D005497 ORTHO05D006733 3.0e-10 70.5 272 27.6
MBI15_g07765_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 3.9e-10 70.1 258 29.8
Nn2g12349 Nelumbo nucifera HOM05D005497 ORTHO05D006733 5.1e-10 69.7 270 27.8
Eucgr.F04316 Eucalyptus grandis HOM05D005497 ORTHO05D006733 1.5e-09 68.2 189 34.9
Psat5g032840 Pisum sativum HOM05D005497 ORTHO05D006733 2.5e-09 67.4 297 25.6
Sabra06G0206300 Salix brachista HOM05D005497 ORTHO05D006733 3.3e-09 67.0 319 23.5
Hund19563 Selenicereus undatus HOM05D005497 ORTHO05D006733 5.6e-09 66.2 347 26.2
TAR626G1486 Trochodendron aralioides HOM05D005497 ORTHO05D006733 5.6e-09 66.2 294 28.2
CiPaw.07G229800 Carya illinoinensis HOM05D005497 ORTHO05D006733 7.4e-09 65.9 277 26.4
Cc08_g07940 Coffea canephora HOM05D005497 ORTHO05D006733 7.4e-09 65.9 163 36.8
ATR0739G202 Amborella trichopoda HOM05D005497 ORTHO05D006733 1.3e-08 65.1 168 33.3
FAN05G5083 Fragaria x ananassa HOM05D005497 ORTHO05D006733 1.6e-08 64.7 241 29.5
TAR383G0546 Trochodendron aralioides HOM05D005497 ORTHO05D006733 1.6e-08 64.7 178 34.8
MSTRG.25841 Avicennia marina HOM05D005497 ORTHO05D006733 2.8e-08 63.9 349 24.1
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 6.2e-08 62.8 128 31.2
SMO116G0351 Selaginella moellendorffii HOM05D005497 ORTHO05D006733 6.2e-08 62.8 122 32.8
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 8.1e-08 62.4 128 33.6
Sc23g0006400 Simmondsia chinensis HOM05D005497 ORTHO05D006733 1.1e-07 62.0 281 25.6
Os02g0795200 Oryza sativa ssp. japonica HOM05D005497 ORTHO05D006733 1.4e-07 61.6 130 35.4
Potri.006G263800 Populus trichocarpa HOM05D005497 ORTHO05D006733 1.8e-07 61.2 318 23.3
Peaxi162Scf00195g00412 Petunia axillaris HOM05D005497 ORTHO05D006733 2.4e-07 60.8 263 26.6
Nn8g39876 Nelumbo nucifera HOM05D005497 ORTHO05D006733 3.1e-07 60.5 195 29.7
FAN20G1858 Fragaria x ananassa HOM05D005497 ORTHO05D006733 4.0e-07 60.1 64 50.0
Migut.A00338 Erythranthe guttata HOM05D005497 ORTHO05D006733 5.3e-07 59.7 191 30.4
FAN01G0816 Fragaria x ananassa HOM05D005497 ORTHO05D006733 5.3e-07 59.7 108 38.9
FAN22G2245 Fragaria x ananassa HOM05D005497 ORTHO05D006733 5.3e-07 59.7 167 34.1
Eucgr.C02658 Eucalyptus grandis HOM05D005497 ORTHO05D006733 9.0e-07 58.9 189 32.3
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 9.0e-07 58.9 128 30.5
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 1.2e-06 58.5 136 28.7
FAN11G1326 Fragaria x ananassa HOM05D005497 ORTHO05D006733 1.2e-06 58.5 167 34.1
FAN19G2468 Fragaria x ananassa HOM05D005497 ORTHO05D006733 1.2e-06 58.5 114 37.7
BcaB03g12720 Brassica carinata HOM05D005497 ORTHO05D006733 1.5e-06 58.2 56 48.2
C01p27740 Brassica napus HOM05D005497 ORTHO05D006733 1.5e-06 58.2 54 51.9
FAN23G0278 Fragaria x ananassa HOM05D005497 ORTHO05D006733 1.5e-06 58.2 114 37.7
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 2.0e-06 57.8 128 30.5
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 2.6e-06 57.4 145 31.7
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.6e-06 57.4 186 29.0
Aqoxy7G03424 Aquilegia oxysepala HOM05D005497 ORTHO05D006733 3.4e-06 57.0 332 25.3
CAN.G675.26 Capsicum annuum HOM05D005497 ORTHO05D006733 3.4e-06 57.0 275 25.1
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 4.5e-06 56.6 181 29.3
Zm00001eb374680 Zea mays HOM05D005497 ORTHO05D006733 4.5e-06 56.6 69 44.9
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 5.8e-06 56.2 186 29.0
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 5.8e-06 56.2 148 29.7
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 5.8e-06 56.2 163 25.2
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 7.6e-06 55.8 191 27.2
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 1.0e-05 55.5 131 31.3


User provided reference genes

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