Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 5.9e-92 340.9 177 100.0
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 5.1e-43 178.3 183 58.5
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.6e-39 166.0 181 59.1
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 3.8e-38 162.2 178 59.0
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-37 160.6 181 54.7
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.9e-37 159.8 179 55.9
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.9e-37 159.8 179 55.9
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 1.6e-36 156.8 184 59.2
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 2.1e-36 156.4 179 55.3
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 3.9e-35 152.1 170 54.1
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 5.1e-35 151.8 180 51.1
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 1.5e-34 150.2 170 56.5
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 3.3e-34 149.1 180 50.6
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 4.3e-34 148.7 186 55.9
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.3e-34 148.7 182 55.5
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 7.3e-34 147.9 184 55.4
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 7.3e-34 147.9 155 56.1
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 1.6e-33 146.7 184 57.1
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.8e-33 146.0 186 52.2
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 4.8e-33 145.2 180 50.6
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 4.8e-33 145.2 180 50.6
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 8.1e-33 144.4 184 54.9
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 1.4e-32 143.7 180 55.0
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.4e-32 142.9 170 54.7
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 9.0e-32 141.0 184 53.3
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.2e-31 140.6 176 48.9
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 1.5e-31 140.2 184 53.8
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 1.5e-31 140.2 184 53.8
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 4.5e-31 138.7 181 52.5
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 9.9e-31 137.5 186 51.1
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 6.4e-30 134.8 178 51.7
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 8.4e-30 134.4 182 52.2
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 8.4e-30 134.4 171 53.2
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 8.4e-30 134.4 182 52.2
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 4.2e-29 132.1 166 50.0
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 4.6e-28 128.6 188 46.8
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 4.6e-28 128.6 164 50.0
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 3.0e-27 125.9 197 43.7
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 1.1e-26 124.0 191 45.5
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 2.5e-26 122.9 184 49.5
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.3e-26 122.1 187 48.1
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 2.1e-25 119.8 178 46.1
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 2.8e-25 119.4 160 48.1
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 2.8e-25 119.4 196 42.3
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 2.8e-25 119.4 196 42.9
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-25 119.0 203 41.9
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.1e-25 117.9 188 45.7
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-24 117.5 178 47.2
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 1.1e-24 117.5 178 47.2
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.4e-24 117.1 188 43.1
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.8e-24 116.7 196 41.3
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.8e-24 116.7 186 44.1
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.1e-24 115.9 188 44.7
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.0e-24 115.5 188 45.2
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 4.0e-24 115.5 187 40.6
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.3e-24 115.2 188 44.7
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 9.0e-24 114.4 197 41.6
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 9.0e-24 114.4 189 43.9
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 1.2e-23 114.0 188 43.6
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-23 114.0 188 44.7
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.2e-23 114.0 185 45.4
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.5e-23 113.6 188 44.7
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.0e-23 113.2 183 43.2
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.6e-23 112.8 188 44.1
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.4e-23 112.5 188 44.7
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.5e-23 112.1 188 44.1
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 5.8e-23 111.7 202 39.6
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 1.0e-22 110.9 190 41.6
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.0e-22 110.9 183 42.6
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 1.0e-22 110.9 189 43.4
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 1.3e-22 110.5 189 41.8
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 2.9e-22 109.4 189 41.8
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 3.8e-22 109.0 187 41.2
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 4.9e-22 108.6 182 41.8
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 6.5e-22 108.2 196 40.8
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 1.4e-21 107.1 181 42.5
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 1.9e-21 106.7 184 42.4
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 2.5e-21 106.3 181 42.5
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.2e-21 105.9 197 41.1
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 3.2e-21 105.9 172 42.4
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 4.2e-21 105.5 195 40.5
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.2e-21 105.5 171 43.3
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 4.2e-21 105.5 177 41.8
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 4.2e-21 105.5 195 42.1
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 5.5e-21 105.1 174 42.5
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.2e-20 104.0 183 39.9
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 1.6e-20 103.6 198 40.4
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.6e-20 103.6 198 40.4
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.6e-20 103.6 199 38.7
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.1e-20 103.2 198 40.9
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 3.5e-20 102.4 194 39.2
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 4.6e-20 102.1 196 40.8
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 4.6e-20 102.1 196 38.8
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 4.6e-20 102.1 192 40.1
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 4.6e-20 102.1 172 41.3
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 6.0e-20 101.7 195 37.4
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 6.0e-20 101.7 195 37.4
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 6.0e-20 101.7 195 38.5
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 7.9e-20 101.3 198 40.9
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 1.0e-19 100.9 187 39.6
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.3e-19 100.5 192 39.6
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 3.0e-19 99.4 189 39.2
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 5.1e-19 98.6 193 39.9
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 6.7e-19 98.2 196 38.8
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 6.7e-19 98.2 190 40.5
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 6.7e-19 98.2 208 37.5
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 8.7e-19 97.8 162 41.4
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 8.7e-19 97.8 194 39.2
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 8.7e-19 97.8 194 39.2
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 1.1e-18 97.4 229 34.1
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 1.5e-18 97.1 199 37.7
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 4.3e-18 95.5 180 40.0
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 9.6e-18 94.4 176 38.6
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 1.3e-17 94.0 166 39.2
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 1.6e-17 93.6 203 37.4
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 1.6e-17 93.6 139 43.9
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 2.1e-17 93.2 193 38.3
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 2.1e-17 93.2 112 50.0
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 2.8e-17 92.8 157 43.3
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 3.7e-17 92.4 202 38.6
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 1.1e-16 90.9 187 38.5
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 2.4e-16 89.7 80 66.2
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 3.1e-16 89.4 202 35.6
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 9.0e-16 87.8 163 41.7
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 9.0e-16 87.8 163 41.7
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 1.2e-15 87.4 158 38.0
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.2e-15 87.4 203 34.5
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 1.2e-15 87.4 192 37.5
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 2.0e-15 86.7 128 46.1
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 2.0e-15 86.7 126 46.0
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 2.0e-15 86.7 126 46.0
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 2.0e-15 86.7 191 38.7
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 2.6e-15 86.3 126 43.7
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.6e-15 86.3 146 41.8
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 3.4e-15 85.9 202 32.7
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 1.0e-14 84.3 126 42.9
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.7e-14 83.6 163 38.7
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-14 83.6 135 43.7
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.7e-14 83.6 135 43.7
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 2.9e-14 82.8 197 32.0
BolC2t06459H Brassica oleracea HOM05D004036 ORTHO05D004576 5.0e-14 82.0 108 52.8
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 6.5e-14 81.6 221 33.0
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 2.5e-13 79.7 157 36.3
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 3.2e-13 79.3 170 35.3
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 4.2e-13 79.0 191 34.0
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 2.1e-12 76.6 235 30.6
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 2.7e-12 76.3 150 36.0
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 2.7e-12 76.3 138 37.0
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 6.1e-12 75.1 198 30.8
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.0e-11 74.3 147 36.1
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 3.0e-11 72.8 158 36.7
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 1.9e-10 70.1 171 31.6
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 1.9e-10 70.1 178 33.1
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 3.3e-10 69.3 158 36.1
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 4.3e-10 68.9 77 49.4
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 4.3e-10 68.9 89 46.1
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 7.4e-10 68.2 120 42.5
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 9.7e-10 67.8 92 46.7
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 1.6e-09 67.0 191 30.9
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-09 66.2 55 63.6
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-09 66.2 55 63.6
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 2.4e-08 63.2 175 32.0
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 3.1e-08 62.8 44 68.2
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 2.0e-07 60.1 180 30.6
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 2.6e-07 59.7 173 31.8
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 1.0e-06 57.8 74 45.9
Sed0023203 Sechium edule HOM05D004036 ORTHO05D004576 1.0e-06 57.8 72 47.2
VMungo1309G1209 Vigna mungo HOM05D033454 ORTHO05D050263 6.5e-06 55.1 80 47.5
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 8.5e-06 54.7 178 32.6


User provided reference genes

Program Settings