Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 0.0e+00 2222.2 1129 100.0
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 0.0e+00 1223.4 1177 63.0
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 0.0e+00 1201.0 1168 62.8
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 0.0e+00 1187.9 1179 61.4
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 0.0e+00 1183.3 1172 60.8
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 0.0e+00 1083.9 1188 54.4
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 8.4e-309 1063.9 1187 53.6
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 3.3e-289 998.8 1194 55.7
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 6.5e-261 904.8 1180 51.7
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 1.2e-257 894.0 1163 51.1
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 2.6e-257 892.9 1164 51.1
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 2.6e-257 892.9 1164 51.1
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 7.8e-254 881.3 1155 51.3
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 2.3e-253 879.8 1155 51.3
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 3.3e-252 875.9 1165 51.2
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 2.1e-243 846.7 1163 50.6
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 1.9e-239 833.6 1173 50.6
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 6.0e-230 802.0 1165 49.7
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 6.4e-224 781.9 1137 46.4
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 7.1e-199 698.7 1154 45.5
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 2.3e-197 693.7 1152 45.4
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.8e-194 684.1 1159 45.6
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 1.8e-194 684.1 1159 45.6
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 3.1e-194 683.3 1159 45.5
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.3e-187 661.4 1155 42.0
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 4.2e-151 540.0 786 49.2
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 2.2e-147 527.7 758 50.5
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 1.8e-109 401.7 1262 30.3
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 8.4e-99 366.3 1271 29.8
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.2e-98 364.4 1253 29.7
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 7.8e-97 359.8 1265 29.6
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 3.0e-96 357.8 1253 29.6
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.8e-91 340.9 1255 29.2
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 8.4e-91 339.7 1251 28.7
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 8.4e-91 339.7 1258 29.0
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 2.4e-90 338.2 1260 28.1
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 1.3e-86 325.9 1224 28.8
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 3.1e-85 321.2 1275 27.5
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 2.0e-84 318.5 1260 28.3
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 6.0e-81 307.0 1216 28.5
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.1e-77 296.2 1279 27.7
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 2.4e-77 295.0 1300 27.2
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.1e-74 286.2 1314 27.2
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 2.3e-72 278.5 1298 27.3
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 8.7e-72 276.6 1276 27.0
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 5.7e-71 273.9 1343 26.9
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.8e-70 271.6 1269 27.3
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 8.2e-70 270.0 1269 27.2
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 2.4e-69 268.5 1272 26.7
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.9e-69 266.9 1272 27.2
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.9e-68 263.8 1271 27.1
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 9.4e-66 256.5 1284 27.3
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 6.1e-65 253.8 1305 27.4
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 8.8e-64 250.0 1303 26.7
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.5e-63 249.2 1273 26.4
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 2.8e-62 245.0 1357 26.5
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 5.0e-59 234.2 1317 26.2
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 4.7e-57 227.6 290 52.4
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 1.0e-56 226.5 1302 25.4
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 5.7e-55 220.7 1244 26.1
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 1.7e-51 209.1 968 26.0
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 1.1e-50 206.5 1229 26.3
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 3.9e-48 198.0 1225 26.3
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.8e-46 191.8 1235 24.3
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 8.2e-46 190.3 1247 25.3
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 3.1e-45 188.3 1238 26.6
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.6e-44 186.0 1312 23.9
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.3e-43 183.0 1273 24.9
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 2.5e-42 178.7 1269 25.1
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 7.2e-42 177.2 1235 26.0
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 7.2e-42 177.2 1237 25.8
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 1.2e-41 176.4 1235 25.9
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 3.6e-41 174.9 1244 25.2
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 4.7e-41 174.5 795 28.6
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 5.2e-40 171.0 1239 25.1
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 2.6e-39 168.7 1274 26.1
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 9.8e-39 166.8 1264 24.8
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 2.2e-38 165.6 1248 24.9
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 1.8e-37 162.5 1274 25.5
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 4.1e-37 161.4 1208 24.3
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 4.5e-36 157.9 1235 24.0
C09p65300 Brassica napus HOM05D018796 ORTHO05D023922 2.9e-35 155.2 1303 24.2
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 6.5e-35 154.1 1252 23.9
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 9.4e-34 150.2 1236 23.4
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 4.7e-33 147.9 1049 25.7
BolC9t59357H Brassica oleracea HOM05D018796 ORTHO05D023922 1.0e-32 146.7 1323 23.5
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 1.0e-32 146.7 1248 23.7
A10p26230 Brassica napus HOM05D018796 ORTHO05D023922 2.8e-30 138.7 1321 23.5
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 4.1e-29 134.8 1228 24.2
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 1.6e-28 132.9 528 28.4
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.6e-28 132.9 1223 24.2
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 7.7e-28 130.6 1216 23.1
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.0e-27 130.2 1087 24.7
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.0e-27 130.2 1250 24.5
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 2.3e-27 129.0 377 34.5
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 3.8e-27 128.3 1280 23.0
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.0e-27 127.9 1250 24.7
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 7.2e-26 124.0 1279 22.7
BraA10t44680Z Brassica rapa HOM05D018796 ORTHO05D023922 2.8e-25 122.1 1358 22.7
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 2.8e-25 122.1 1197 23.4
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.6e-25 121.7 554 26.9
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.4e-24 119.8 1267 24.0
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 3.0e-24 118.6 1220 23.3
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.2e-24 117.9 1261 23.4
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 2.6e-23 115.5 1167 22.0
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.6e-23 115.5 1256 23.0
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 7.5e-23 114.0 1180 22.1
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 3.7e-22 111.7 1176 22.3
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 4.9e-22 111.3 1175 23.1
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 1.8e-21 109.4 101 53.5
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.6e-20 106.3 1174 21.3
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.0e-19 103.6 1222 22.9
BcaC04g19217 Brassica carinata HOM05D018796 ORTHO05D023922 1.3e-19 103.2 608 27.0
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.9e-19 101.7 924 25.9
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.5e-18 99.8 1235 23.0
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 9.5e-18 97.1 1296 22.9
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 2.8e-17 95.5 1282 23.1
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 6.2e-17 94.4 1095 22.7
BcaB08g37050 Brassica carinata HOM05D018796 ORTHO05D003767 8.0e-17 94.0 384 30.7
BcaNung04839 Brassica carinata HOM05D004021 ORTHO05D003767 8.0e-17 94.0 69 73.9
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 1.2e-15 90.1 246 34.6
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 2.0e-15 89.4 1257 21.6
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 2.0e-15 89.4 595 25.4
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 2.6e-15 89.0 1272 23.9
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 3.4e-15 88.6 93 49.5
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.7e-14 86.3 85 47.1
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 8.3e-14 84.0 1263 22.2
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.4e-13 83.2 1217 22.8
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.4e-13 83.2 493 25.2
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 1.4e-13 83.2 400 22.8
BcaB08g37051 Brassica carinata HOM05D018796 ORTHO05D003767 1.9e-13 82.8 429 28.0
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.9e-13 82.8 317 28.4
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 3.2e-13 82.0 113 38.9
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.2e-13 82.0 498 24.9
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 7.0e-13 80.9 310 28.4
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 1.2e-12 80.1 278 29.5
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.2e-12 80.1 97 44.3
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.6e-12 79.7 465 24.9
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.0e-12 79.3 146 36.3
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 3.5e-12 78.6 88 45.5
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 1.3e-11 76.6 58 50.0
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 1.7e-11 76.3 107 37.4
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 3.0e-11 75.5 1177 21.7
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 3.9e-11 75.1 218 29.4
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 5.0e-11 74.7 147 35.4
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 5.0e-11 74.7 1034 24.5
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 1.9e-10 72.8 516 25.2
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 1.9e-10 72.8 351 27.4
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 3.3e-10 72.0 70 42.9
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 5.6e-10 71.2 222 29.3
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 5.6e-10 71.2 78 39.7
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 7.3e-10 70.9 61 45.9
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 7.3e-10 70.9 299 27.8
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 9.5e-10 70.5 151 31.8
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 1.6e-09 69.7 106 38.7
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 1.6e-09 69.7 189 28.6
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.1e-09 69.3 1281 22.4
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 2.1e-09 69.3 1208 21.3
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 4.7e-09 68.2 377 25.5
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 8.1e-09 67.4 390 23.8
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 8.1e-09 67.4 158 31.6
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 2.3e-08 65.9 67 43.3
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 6.8e-08 64.3 501 24.4
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.2e-07 63.5 97 40.2
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 1.5e-07 63.2 76 44.7
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.6e-07 62.4 1182 21.1
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 3.4e-07 62.0 303 28.1
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 4.4e-07 61.6 259 28.2
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 5.8e-07 61.2 76 40.8
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 7.5e-07 60.8 467 23.1
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 1.7e-06 59.7 1128 21.4
unitig_85.g27153 Utricularia gibba HOM05D004021 ORTHO05D003767 1.7e-06 59.7 133 30.8
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 4.9e-06 58.2 520 24.2
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 4.9e-06 58.2 1212 22.4


User provided reference genes

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