Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1867.0 950 100.0
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1642.5 983 85.1
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1634.8 983 84.3
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1632.5 983 84.4
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1623.6 983 84.1
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1621.3 983 84.0
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1611.3 983 83.3
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1607.0 983 82.8
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1604.0 998 82.2
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1603.6 983 83.0
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1601.3 983 82.9
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1599.3 983 82.5
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1595.5 984 82.5
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1593.2 1003 81.1
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1592.4 984 82.3
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1580.8 983 82.2
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1577.8 1010 80.0
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1527.3 998 79.1
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1471.8 983 76.8
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1464.5 983 77.5
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1333.5 986 68.7
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1328.9 985 67.9
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1327.8 983 67.9
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1314.7 985 67.2
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1314.3 993 67.0
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1312.4 985 67.5
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1312.0 983 67.1
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1308.5 986 66.9
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1304.7 984 66.8
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1302.3 986 66.4
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1301.6 984 67.1
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1301.6 983 66.6
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1298.9 984 67.6
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1297.7 984 66.6
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1295.8 984 66.2
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1293.5 984 65.9
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1293.5 984 66.0
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1293.1 986 66.0
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1291.2 985 66.4
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1288.9 985 67.0
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1285.0 985 66.1
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1282.7 984 65.5
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1280.8 1007 64.4
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1279.6 984 65.8
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1278.1 984 65.2
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1274.2 984 64.6
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1270.0 984 64.1
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1269.2 986 64.5
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1268.4 984 63.8
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1267.7 984 64.6
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1266.5 983 64.6
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1266.1 987 63.9
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1266.1 984 65.3
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1264.6 984 65.1
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1263.1 984 63.9
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1263.1 982 64.6
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1262.3 954 66.4
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1262.3 986 65.3
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1262.3 984 64.2
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1261.9 984 63.8
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1260.4 984 65.1
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1260.0 985 64.7
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1259.6 984 65.1
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1258.0 985 65.0
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1257.3 985 64.2
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1256.5 985 64.6
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1256.1 985 64.7
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1254.2 984 64.7
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1253.8 984 63.3
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1251.1 984 63.0
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1250.3 985 64.7
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1250.3 984 63.2
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1246.1 984 63.1
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1244.6 985 64.6
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1242.3 984 63.0
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1241.1 984 63.4
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1239.9 985 63.9
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1238.8 973 63.9
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1238.4 984 63.0
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1235.7 983 63.5
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1233.0 984 62.5
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1230.7 983 62.5
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1229.9 983 63.0
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1229.9 986 62.4
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1228.8 984 63.2
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1226.1 983 62.6
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1225.7 1006 62.9
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1225.3 985 63.4
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1225.3 984 62.6
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1224.9 978 63.2
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1211.4 984 61.4
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1211.4 984 61.4
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1204.9 992 62.4
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1194.9 984 61.0
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1194.9 992 62.4
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1191.4 955 61.7
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1190.6 1077 57.9
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1189.9 952 63.3
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1189.9 985 60.8
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1189.5 963 61.7
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1188.7 988 60.1
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1187.6 963 61.5
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1183.7 899 66.1
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1180.2 989 61.0
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1179.9 1014 59.1
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1174.1 986 60.4
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1169.1 986 59.9
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1166.0 986 59.6
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1164.4 1079 56.2
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1162.5 986 59.5
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1156.0 992 59.5
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1154.0 980 59.5
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1153.7 847 65.6
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1146.7 968 61.3
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1143.3 951 59.7
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1105.9 978 57.3
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1093.6 984 55.9
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1090.9 975 55.7
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1089.7 897 62.0
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1083.9 975 55.5
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1075.5 882 60.1
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.2e-308 1063.1 844 61.5
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 5.3e-304 1047.7 1012 54.8
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 2.6e-295 1018.8 810 61.6
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 2.1e-276 956.1 953 52.4
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 4.7e-260 901.7 988 48.3
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.4e-259 900.2 989 48.1
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 5.3e-248 861.7 541 74.7
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 2.8e-220 769.6 955 44.7
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 1.1e-216 757.7 659 60.1
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 4.9e-201 705.7 530 65.7
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.5e-197 693.3 688 51.6
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 3.9e-182 642.9 879 39.4
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 2.6e-178 630.2 657 51.9
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 9.3e-168 595.1 362 77.3
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 5.3e-147 526.2 809 40.9
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 1.1e-136 491.9 296 80.4
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 2.7e-135 487.3 296 78.7
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 2.6e-133 480.7 925 35.0
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.3e-126 457.6 282 77.0
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-110 402.9 845 33.5
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.2e-106 392.1 420 53.3
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.5e-104 385.2 257 72.4
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 2.9e-100 370.9 1018 30.2
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 4.1e-99 367.1 667 38.4
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 6.2e-95 353.2 636 34.1
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 3.1e-78 297.7 430 38.8
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 5.3e-70 270.4 330 47.6
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.3e-65 255.8 313 45.0
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 5.6e-64 250.4 319 43.9
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 1.5e-61 242.3 129 94.6
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 2.2e-60 238.4 125 96.8
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 1.3e-55 222.6 147 76.9
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.1e-55 221.9 125 92.8
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 5.3e-54 217.2 380 37.1
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 6.9e-54 216.9 184 58.7
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 4.5e-53 214.2 251 47.8
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.1e-50 205.3 220 50.5
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 3.1e-46 191.4 140 63.6
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 1.9e-43 182.2 105 80.0
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 2.6e-37 161.8 200 49.5
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 6.3e-31 140.6 333 27.3
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 4.1e-30 137.9 85 78.8
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 4.2e-27 127.9 149 55.7
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 7.2e-27 127.1 82 68.3
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 1.6e-26 125.9 121 62.8
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 9.4e-19 100.1 83 66.3
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 1.4e-17 96.3 62 71.0
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 1.4e-17 96.3 82 57.3
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 3.0e-17 95.1 63 68.3
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 2.2e-15 89.0 60 71.7
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 3.7e-15 88.2 62 71.0
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 1.8e-14 85.9 53 66.0
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 4.1e-14 84.7 107 51.4
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 4.1e-14 84.7 107 51.4
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.2e-13 83.2 60 68.3
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 2.7e-13 82.0 107 50.5
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 4.5e-13 81.3 60 66.7
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 1.1e-11 76.6 48 75.0
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 3.2e-11 75.1 182 29.1
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 1.1e-06 60.1 124 32.3


User provided reference genes

Program Settings