Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 3.5e-43 177.9 94 100.0
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 6.7e-34 147.1 94 83.0
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 1.5e-33 146.0 94 83.0
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 1.9e-33 145.6 94 81.9
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 4.3e-33 144.4 94 81.9
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 5.6e-33 144.1 94 80.9
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 7.4e-33 143.7 94 81.9
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 9.6e-33 143.3 94 80.9
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 2.1e-32 142.1 94 80.9
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 2.8e-32 141.7 94 80.9
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 2.8e-32 141.7 94 80.9
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 2.8e-32 141.7 94 80.9
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 2.8e-32 141.7 94 80.9
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 2.8e-32 141.7 94 80.9
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.8e-31 139.0 94 79.8
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.8e-31 139.0 94 79.8
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 2.0e-30 135.6 94 77.7
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 5.5e-28 127.5 83 83.1
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 2.3e-26 122.1 83 78.3
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.5e-25 119.4 94 75.5
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 3.3e-25 118.2 94 71.3
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 5.6e-25 117.5 94 73.4
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 9.6e-25 116.7 94 69.1
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 2.1e-24 115.5 94 69.1
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 6.2e-24 114.0 94 68.1
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 6.2e-24 114.0 94 68.1
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 1.8e-23 112.5 95 68.4
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 4.0e-23 111.3 94 68.1
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 5.3e-23 110.9 94 69.1
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 5.3e-23 110.9 94 68.1
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 5.3e-23 110.9 95 67.4
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 6.9e-23 110.5 94 64.9
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 1.5e-22 109.4 93 66.7
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.9e-21 105.1 94 60.6
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.9e-21 105.1 94 60.6
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 4.9e-21 104.4 95 67.4
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 1.9e-20 102.4 94 64.9
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 1.9e-20 102.4 94 64.9
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 4.2e-20 101.3 94 61.7
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 7.1e-20 100.5 96 62.5
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 7.1e-20 100.5 94 62.8
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 9.3e-20 100.1 94 62.8
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.2e-19 99.8 96 60.4
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 2.1e-19 99.0 94 61.7
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 2.1e-19 99.0 95 65.3
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 2.7e-19 98.6 83 68.7
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 3.5e-19 98.2 96 61.5
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.5e-19 98.2 85 67.1
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.5e-19 98.2 95 62.1
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 6.0e-19 97.4 85 67.1
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 7.9e-19 97.1 96 60.4
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 2.3e-18 95.5 97 58.8
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 2.3e-18 95.5 95 63.2
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 2.3e-18 95.5 95 63.2
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 3.0e-18 95.1 97 57.7
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.1e-18 94.4 83 67.5
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 6.7e-18 94.0 94 58.5
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 8.7e-18 93.6 95 57.9
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 8.7e-18 93.6 94 60.6
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 1.1e-17 93.2 94 59.6
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 1.1e-17 93.2 95 62.1
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 1.5e-17 92.8 96 63.5
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 3.3e-17 91.7 94 60.6
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 5.7e-17 90.9 83 65.1
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 5.7e-17 90.9 85 64.7
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 9.7e-17 90.1 95 58.9
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 9.7e-17 90.1 95 58.9
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 1.6e-16 89.4 85 61.2
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 3.7e-16 88.2 98 55.1
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 4.8e-16 87.8 98 58.2
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 6.3e-16 87.4 51 84.3
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 1.4e-15 86.3 84 63.1
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 2.4e-15 85.5 118 47.5
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 2.4e-15 85.5 83 59.0
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 4.1e-15 84.7 118 45.8
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 4.1e-15 84.7 89 61.8
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 4.1e-15 84.7 95 57.9
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 5.3e-15 84.3 83 57.8
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 5.3e-15 84.3 131 44.3
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 6.9e-15 84.0 85 58.8
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 9.0e-15 83.6 94 58.5
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 9.0e-15 83.6 95 55.8
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.5e-14 82.8 51 82.4
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 1.5e-14 82.8 95 53.7
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 2.6e-14 82.0 53 77.4
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.5e-14 81.3 84 60.7
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 4.5e-14 81.3 51 78.4
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 5.9e-14 80.9 83 59.0
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.7e-13 79.3 83 61.4
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 2.2e-13 79.0 94 54.3
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 2.2e-13 79.0 84 60.7
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 2.9e-13 78.6 77 62.3
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 5.0e-13 77.8 86 57.0
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 8.5e-13 77.0 83 57.8
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 1.1e-12 76.6 83 56.6
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 1.9e-12 75.9 94 55.3
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.2e-11 73.2 94 50.0
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 2.1e-11 72.4 93 50.5
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.4e-10 69.7 76 57.9
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 3.9e-10 68.2 107 41.1
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 3.9e-10 68.2 53 66.0
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 3.9e-10 68.2 80 55.0
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.9e-10 68.2 110 43.6
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 5.1e-10 67.8 84 54.8
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 6.7e-10 67.4 108 43.5
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 2.0e-09 65.9 105 41.0
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 4.3e-09 64.7 93 45.2
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 7.4e-09 63.9 104 45.2
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 9.7e-09 63.5 108 41.7
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 9.7e-09 63.5 100 44.0
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 1.3e-08 63.2 109 41.3
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 1.7e-08 62.8 105 42.9
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 1.7e-08 62.8 105 42.9
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.7e-08 62.8 109 40.4
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.2e-08 62.4 103 45.6
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 2.8e-08 62.0 100 42.0
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 2.8e-08 62.0 104 39.4
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 3.7e-08 61.6 106 42.5
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 4.8e-08 61.2 109 40.4
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 6.3e-08 60.8 109 43.1
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 6.3e-08 60.8 109 43.1
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 8.2e-08 60.5 95 44.2
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 8.2e-08 60.5 99 45.5
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 8.2e-08 60.5 105 38.1
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.1e-07 60.1 103 44.7
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.1e-07 60.1 106 42.5
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.1e-07 60.1 106 42.5
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 1.1e-07 60.1 106 42.5
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 1.4e-07 59.7 109 42.2
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 1.4e-07 59.7 106 40.6
Carub.0006s1188 Capsella rubella HOM05D007429 ORTHO05D003505 1.8e-07 59.3 37 78.4
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 1.8e-07 59.3 101 41.6
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 2.4e-07 58.9 108 42.6
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 3.1e-07 58.5 93 47.3
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 3.1e-07 58.5 109 41.3
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 3.1e-07 58.5 109 38.5
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 4.1e-07 58.2 109 38.5
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 4.1e-07 58.2 110 40.0
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 4.1e-07 58.2 110 40.0
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 4.1e-07 58.2 105 41.9
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 4.1e-07 58.2 99 41.4
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 5.3e-07 57.8 90 41.1
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 5.3e-07 57.8 83 43.4
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 5.3e-07 57.8 47 61.7
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 5.3e-07 57.8 47 61.7
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 5.3e-07 57.8 106 42.5
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 6.9e-07 57.4 106 40.6
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 6.9e-07 57.4 107 37.4
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 6.9e-07 57.4 103 39.8
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 1.2e-06 56.6 91 45.1
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 1.2e-06 56.6 100 39.0
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 1.5e-06 56.2 51 54.9
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 1.5e-06 56.2 106 40.6
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 2.0e-06 55.8 93 47.3
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 2.6e-06 55.5 97 43.3
HPP92_009091 Vanilla planifolia HOM05D007429 ORTHO05D003505 2.6e-06 55.5 45 71.1
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 3.4e-06 55.1 89 43.8
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 4.5e-06 54.7 106 37.7
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 5.9e-06 54.3 92 44.6
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 7.7e-06 53.9 92 40.2
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 7.7e-06 53.9 93 40.9
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 7.7e-06 53.9 94 45.7
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 7.7e-06 53.9 95 44.2
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 7.7e-06 53.9 111 37.8


User provided reference genes

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