Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G14990 Aethionema arabicum HOM05D007094 ORTHO05D008264 9.5e-59 229.9 114 100.0
Carub.0006s1075 Capsella rubella HOM05D007094 ORTHO05D008264 3.5e-45 184.9 111 81.1
AT5G12240 Arabidopsis thaliana HOM05D007094 ORTHO05D008264 3.6e-42 174.9 111 77.5
CARHR200870 Cardamine hirsuta HOM05D007094 ORTHO05D008264 9.8e-40 166.8 111 71.2
C03p06400 Brassica napus HOM05D007094 ORTHO05D008264 3.2e-38 161.8 114 71.9
BcaB01g05415 Brassica carinata HOM05D007094 ORTHO05D008264 8.6e-36 153.7 115 70.4
A03p05490 Brassica napus HOM05D007094 ORTHO05D008264 2.5e-35 152.1 114 70.2
BraA03t09887Z Brassica rapa HOM05D007094 ORTHO05D008264 2.5e-35 152.1 114 70.2
THA.LOC104811204 Tarenaya hassleriana HOM05D007094 ORTHO05D008264 6.2e-34 147.5 114 64.0
BolC9t59296H Brassica oleracea HOM05D007094 ORTHO05D008264 1.7e-31 139.4 116 65.5
Prupe.6G146500 Prunus persica HOM05D007094 ORTHO05D008264 6.0e-29 131.0 114 58.8
Ciclev10017201m.g Citrus clementina HOM05D007094 ORTHO05D008264 2.5e-27 125.6 114 57.9
BolC3t13146H Brassica oleracea HOM05D000282 ORTHO05D000272 9.6e-27 123.6 82 73.2
Duzib168G1032 Durio zibethinus HOM05D007094 ORTHO05D008264 6.2e-26 120.9 115 54.8
FvH4_3g26230 Fragaria vesca HOM05D007094 ORTHO05D008264 1.1e-25 120.2 114 56.1
FAN11G3047 Fragaria x ananassa HOM05D007094 ORTHO05D008264 1.1e-25 120.2 114 56.1
FAN25G3244 Fragaria x ananassa HOM05D007094 ORTHO05D008264 1.8e-25 119.4 114 54.4
QL01p016497 Quercus lobata HOM05D007094 ORTHO05D008264 6.9e-25 117.5 115 53.9
QL01p024141 Quercus lobata HOM05D007094 ORTHO05D008264 6.9e-25 117.5 115 53.9
Duzib150G1213 Durio zibethinus HOM05D007094 ORTHO05D008264 8.9e-25 117.1 112 52.7
Dinv22210 Davidia involucrata HOM05D007094 ORTHO05D008264 1.5e-24 116.3 114 55.3
LjContig00564g0008375 Lotus japonicus HOM05D007094 ORTHO05D008264 3.4e-24 115.2 113 54.0
Manes.01G177900 Manihot esculenta HOM05D007094 ORTHO05D008264 3.4e-24 115.2 116 50.9
RcHm_v2.0_Chr5g0048901 Rosa chinensis HOM05D007094 ORTHO05D008264 3.4e-24 115.2 114 55.3
MD11G1174500 Malus domestica HOM05D007094 ORTHO05D008264 4.4e-24 114.8 114 52.6
Duzib170G0850 Durio zibethinus HOM05D007094 ORTHO05D008264 5.8e-24 114.4 115 51.3
BraA10t44623Z Brassica rapa HOM05D007094 ORTHO05D008264 7.6e-24 114.0 113 60.2
Thecc.09G254700 Theobroma cacao HOM05D007094 ORTHO05D008264 7.6e-24 114.0 115 52.2
TWI31G1326 Tripterygium wilfordii HOM05D007094 ORTHO05D008264 1.7e-23 112.8 116 53.4
CiPaw.14G110600 Carya illinoinensis HOM05D007094 ORTHO05D008264 3.8e-23 111.7 116 53.4
Migut.D00679 Erythranthe guttata HOM05D007094 ORTHO05D008264 4.9e-23 111.3 114 56.1
Aqoxy2G00509 Aquilegia oxysepala HOM05D007094 ORTHO05D008264 6.4e-23 110.9 111 55.0
MSTRG.21339 Avicennia marina HOM05D007094 ORTHO05D008264 6.4e-23 110.9 115 54.8
Haze_23270 Corylus avellana HOM05D007094 ORTHO05D008264 6.4e-23 110.9 114 51.8
Nn7g36894 Nelumbo nucifera HOM05D007094 ORTHO05D008264 6.4e-23 110.9 115 53.0
COL.COLO4_24933 Corchorus olitorius HOM05D007094 ORTHO05D008264 2.4e-22 109.0 114 50.9
Gohir.A09G108300 Gossypium hirsutum HOM05D007094 ORTHO05D008264 2.4e-22 109.0 115 54.8
Atru.chr3.2855 Acer truncatum HOM05D007094 ORTHO05D008264 3.2e-22 108.6 115 53.9
Atru.chr3.2857 Acer truncatum HOM05D007094 ORTHO05D008264 3.2e-22 108.6 115 53.9
A10p25550 Brassica napus HOM05D007094 ORTHO05D008264 4.2e-22 108.2 113 56.6
Cfa003293 Carpinus fangiana HOM05D007094 ORTHO05D008264 4.2e-22 108.2 114 52.6
MBI13_g09208_MAGBIO Magnolia biondii HOM05D007094 ORTHO05D008264 4.2e-22 108.2 114 50.9
Cc01_g06340 Coffea canephora HOM05D007094 ORTHO05D008264 7.1e-22 107.5 113 50.4
Glyma.14G036700 Glycine max HOM05D007094 ORTHO05D008264 9.3e-22 107.1 113 52.2
GSVIVG01037355001 Vitis vinifera HOM05D007094 ORTHO05D008264 9.3e-22 107.1 119 50.4
Cpa.g.sc743.4 Carica papaya HOM05D007094 ORTHO05D008264 1.2e-21 106.7 114 57.0
Gorai.006G122200 Gossypium raimondii HOM05D007094 ORTHO05D008264 1.6e-21 106.3 115 52.2
Gohir.D09G105400 Gossypium hirsutum HOM05D007094 ORTHO05D008264 2.1e-21 105.9 115 52.2
Potri.009G069000 Populus trichocarpa HOM05D007094 ORTHO05D008264 2.7e-21 105.5 129 49.6
PSO339G5619 Papaver somniferum HOM05D007094 ORTHO05D008264 4.6e-21 104.8 119 52.9
CDE04G2345 Ceratophyllum demersum HOM05D007094 ORTHO05D008264 6.0e-21 104.4 121 51.2
TPR.G16423 Trifolium pratense HOM05D007094 ORTHO05D008264 6.0e-21 104.4 116 46.6
TAR633G0748 Trochodendron aralioides HOM05D007094 ORTHO05D008264 7.8e-21 104.0 99 57.6
Glyma.02G277800 Glycine max HOM05D007094 ORTHO05D008264 1.3e-20 103.2 113 50.4
PGR119G0280 Punica granatum HOM05D007094 ORTHO05D008264 1.3e-20 103.2 114 50.0
Ah.04g159660 Amaranthus hybridus HOM05D007094 ORTHO05D008264 2.3e-20 102.4 114 50.0
arahy.Tifrunner.gnm1.ann1.WS3KYJ Arachis hypogaea HOM05D007094 ORTHO05D008264 2.3e-20 102.4 116 50.9
MSTRG.21340 Avicennia marina HOM05D007094 ORTHO05D008264 2.3e-20 102.4 113 51.3
PSO384G3224 Papaver somniferum HOM05D007094 ORTHO05D008264 2.3e-20 102.4 119 51.3
Medtr5g089030 Medicago truncatula HOM05D007094 ORTHO05D008264 3.0e-20 102.1 119 47.1
Actinidia06990 Actinidia chinensis HOM05D007094 ORTHO05D008264 6.6e-20 100.9 114 47.4
FAN21G1281 Fragaria x ananassa HOM05D007094 ORTHO05D008264 8.7e-20 100.5 98 54.1
Potri.001G274400 Populus trichocarpa HOM05D007094 ORTHO05D008264 8.7e-20 100.5 115 50.4
Rhsim13G0205900 Rhododendron simsii HOM05D007094 ORTHO05D008264 8.7e-20 100.5 121 48.8
arahy.Tifrunner.gnm1.ann1.S7BBNZ Arachis hypogaea HOM05D007094 ORTHO05D008264 1.1e-19 100.1 116 50.9
Lalb_Chr04g0249301 Lupinus albus HOM05D007094 ORTHO05D008264 1.9e-19 99.4 114 48.2
ATR0307G079 Amborella trichopoda HOM05D007094 ORTHO05D008264 2.5e-19 99.0 110 50.0
arahy.Tifrunner.gnm1.ann1.MLT6HR Arachis hypogaea HOM05D007094 ORTHO05D008264 2.5e-19 99.0 115 48.7
Lalb_Chr17g0347841 Lupinus albus HOM05D007094 ORTHO05D008264 2.5e-19 99.0 117 47.9
Sed0011068 Sechium edule HOM05D007094 ORTHO05D008264 3.3e-19 98.6 115 49.6
Psat0s2305g0120 Pisum sativum HOM05D007094 ORTHO05D008264 5.6e-19 97.8 116 46.6
Oeu001497.1 Olea europaea HOM05D007094 ORTHO05D008264 7.3e-19 97.4 113 49.6
CAN.G1167.7 Capsicum annuum HOM05D007094 ORTHO05D008264 1.3e-18 96.7 117 49.6
Phvul.008G203100 Phaseolus vulgaris HOM05D007094 ORTHO05D008264 1.3e-18 96.7 113 47.8
Sopen11g024820 Solanum pennellii HOM05D007094 ORTHO05D008264 1.6e-18 96.3 121 50.4
SGA_v2.0_scaffold29G12215 Striga asiatica HOM05D007094 ORTHO05D008264 1.6e-18 96.3 100 53.0
Solyc11g065080.2 Solanum lycopersicum HOM05D007094 ORTHO05D008264 2.1e-18 95.9 118 50.0
PGSC0003DMG402031249 Solanum tuberosum HOM05D007094 ORTHO05D008264 2.1e-18 95.9 118 49.2
CANSAT54G2518 Cannabis sativa HOM05D007094 ORTHO05D008264 2.8e-18 95.5 113 46.0
HPP92_015618 Vanilla planifolia HOM05D007094 ORTHO05D008264 2.8e-18 95.5 112 47.3
EL10Ac4g10089 Beta vulgaris HOM05D007094 ORTHO05D008264 4.8e-18 94.7 116 47.4
Sc16g0010910 Simmondsia chinensis HOM05D007094 ORTHO05D008264 6.2e-18 94.4 114 47.4
Sabra16G0168900 Salix brachista HOM05D007094 ORTHO05D008264 3.1e-17 92.0 128 43.0
ClCG02G022690 Citrullus lanatus HOM05D007094 ORTHO05D008264 2.0e-16 89.4 114 47.4
C09p64630 Brassica napus HOM05D007094 ORTHO05D008264 2.9e-15 85.5 83 60.2
Zm00001eb110280 Zea mays HOM05D007094 ORTHO05D008264 2.9e-15 85.5 115 45.2
VMungo0647G0750 Vigna mungo HOM05D007094 ORTHO05D008264 4.9e-15 84.7 130 41.5
MELO3C014546.2 Cucumis melo HOM05D007094 ORTHO05D008264 6.4e-15 84.3 98 50.0
DCAR_029904 Daucus carota HOM05D007094 ORTHO05D008264 6.4e-15 84.3 97 45.4
Lsat_1_v5_gn_2_26200 Lactuca sativa HOM05D007094 ORTHO05D008264 1.4e-14 83.2 116 43.1
unitig_52.g16873 Utricularia gibba HOM05D007094 ORTHO05D008264 1.9e-14 82.8 114 43.9
Zm00001eb329040 Zea mays HOM05D007094 ORTHO05D008264 2.4e-14 82.4 114 43.0
Lj1A303G25 Lonicera japonica HOM05D007094 ORTHO05D008264 5.4e-14 81.3 80 52.5
ECA238G4818 Erigeron canadensis HOM05D007094 ORTHO05D008264 7.1e-14 80.9 115 43.5
Eucgr.J00674 Eucalyptus grandis HOM05D007094 ORTHO05D008264 3.5e-13 78.6 88 47.7
Lj1A294T17 Lonicera japonica HOM05D007094 ORTHO05D008264 4.6e-13 78.2 72 56.9
Peaxi162Scf00004g04119 Petunia axillaris HOM05D007094 ORTHO05D008264 3.9e-12 75.1 91 49.5
Nitab4.5_0004018g0040 Nicotiana tabacum HOM05D007094 ORTHO05D008264 4.3e-11 71.6 91 48.4
HanXRQChr12g0381391 Helianthus annuus HOM05D007094 ORTHO05D008264 7.4e-11 70.9 103 46.6
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 6.2e-10 67.8 46 69.6
Oeu032576.1 Olea europaea HOM05D007094 ORTHO05D008264 1.4e-09 66.6 48 62.5
Hund21962 Selenicereus undatus HOM05D007094 ORTHO05D008264 9.0e-09 63.9 199 30.2
AagrBONN_evm.TU.Sc2ySwM_368.1089 Anthoceros agrestis HOM05D007094 ORTHO05D008264 2.0e-08 62.8 132 35.6
C09p64640 Brassica napus HOM05D007094 ORTHO05D008264 4.5e-08 61.6 35 80.0
Pp3c24_4990 Physcomitrium patens HOM05D007094 ORTHO05D008264 5.8e-08 61.2 124 33.9
Os07g0641800 Oryza sativa ssp. japonica HOM05D007094 ORTHO05D008264 7.6e-08 60.8 50 58.0
Nitab4.5_0000390g0140 Nicotiana tabacum HOM05D021104 ORTHO05D008264 9.9e-08 60.5 80 45.0
Peaxi162Scf00032g02018 Petunia axillaris HOM05D021104 ORTHO05D008264 9.9e-08 60.5 79 43.0
Nitab4.5_0006052g0020 Nicotiana tabacum HOM05D021104 ORTHO05D008264 1.7e-07 59.7 79 45.6
Solyc01g008680.4 Solanum lycopersicum HOM05D021104 ORTHO05D008264 2.2e-07 59.3 78 42.3
Sopen01g004200 Solanum pennellii HOM05D021104 ORTHO05D008264 2.2e-07 59.3 78 42.3
Hma1.2p1_0460F.1_g157640 Hydrangea macrophylla HOM05D007094 ORTHO05D008264 8.4e-07 57.4 111 40.5
PGSC0003DMG400004429 Solanum tuberosum HOM05D021104 ORTHO05D008264 3.2e-06 55.5 80 42.5
vmacro08628 Vaccinium macrocarpon HOM05D007094 ORTHO05D008264 5.5e-06 54.7 78 42.3
DCAR_029979 Daucus carota HOM05D007094 ORTHO05D008264 7.1e-06 54.3 47 44.7


User provided reference genes

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