Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 2.6e-79 298.5 135 100.0
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 6.8e-72 273.9 135 90.4
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 7.5e-71 270.4 135 88.9
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 1.3e-70 269.6 135 88.1
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 1.3e-70 269.6 135 88.1
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 1.7e-70 269.2 135 88.1
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 2.2e-70 268.9 135 88.1
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 2.8e-70 268.5 135 88.1
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 1.1e-69 266.5 135 87.4
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 1.1e-69 266.5 135 87.4
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 5.4e-69 264.2 135 87.4
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 2.7e-68 261.9 136 87.5
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 2.3e-67 258.8 135 85.2
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 2.9e-67 258.5 136 86.0
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 2.9e-67 258.5 136 86.0
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 5.6e-66 254.2 135 83.7
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 6.1e-65 250.8 142 81.0
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.0e-59 233.4 135 74.8
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 3.0e-59 231.9 135 74.8
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 8.6e-59 230.3 135 74.1
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 2.5e-58 228.8 135 73.3
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 2.5e-58 228.8 135 74.8
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 2.5e-58 228.8 150 68.7
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.5e-58 228.8 135 74.1
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.5e-58 228.8 135 74.1
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 7.3e-58 227.3 135 72.6
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 7.3e-58 227.3 123 80.5
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 7.3e-58 227.3 123 80.5
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 7.3e-58 227.3 123 79.7
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 9.5e-58 226.9 134 71.6
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 9.5e-58 226.9 135 72.6
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 1.2e-57 226.5 135 72.6
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 1.6e-57 226.1 135 71.1
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 2.1e-57 225.7 135 71.1
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 6.2e-57 224.2 135 72.6
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 8.0e-57 223.8 135 70.4
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 8.0e-57 223.8 135 72.6
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 1.4e-56 223.0 147 68.7
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 1.8e-56 222.6 135 73.3
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 2.3e-56 222.2 123 78.0
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 2.3e-56 222.2 135 73.3
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 2.0e-55 219.2 132 71.2
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 2.0e-55 219.2 135 71.1
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.6e-55 218.8 135 71.1
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 5.8e-55 217.6 130 73.1
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 5.8e-55 217.6 148 64.2
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 7.5e-55 217.2 132 70.5
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 1.3e-54 216.5 149 63.8
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.7e-54 216.1 147 66.0
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.7e-54 216.1 130 70.8
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.9e-54 215.3 137 72.3
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.9e-54 215.3 137 72.3
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 3.7e-54 214.9 148 64.2
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 3.7e-54 214.9 133 70.7
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.7e-54 214.9 137 72.3
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 3.7e-54 214.9 145 64.8
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 4.9e-54 214.5 131 71.8
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.9e-54 214.5 150 63.3
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 8.3e-54 213.8 135 69.6
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.4e-53 213.0 135 68.1
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.4e-53 213.0 135 69.6
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.4e-53 213.0 159 61.6
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 1.4e-53 213.0 130 70.0
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 3.2e-53 211.8 141 66.7
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 4.1e-53 211.5 135 68.9
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 4.1e-53 211.5 133 68.4
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 4.1e-53 211.5 123 73.2
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 4.1e-53 211.5 135 68.9
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 5.4e-53 211.1 133 69.2
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 5.4e-53 211.1 152 62.5
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 7.0e-53 210.7 153 61.4
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 2.7e-52 208.8 146 63.7
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 4.6e-52 208.0 159 56.6
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 4.6e-52 208.0 145 61.4
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 4.6e-52 208.0 145 64.1
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 7.8e-52 207.2 148 62.8
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 7.8e-52 207.2 144 63.9
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 7.8e-52 207.2 132 68.2
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.7e-51 206.1 120 70.8
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 3.9e-51 204.9 123 71.5
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 5.0e-51 204.5 126 66.7
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 5.0e-51 204.5 126 66.7
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 6.6e-51 204.1 132 66.7
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 1.1e-50 203.4 133 66.2
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 1.5e-50 203.0 158 58.2
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 2.5e-50 202.2 121 70.2
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 3.3e-50 201.8 122 68.9
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 5.6e-50 201.1 118 72.0
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 7.3e-50 200.7 123 69.1
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 9.5e-50 200.3 123 68.3
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 9.5e-50 200.3 132 68.2
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.6e-49 199.5 133 68.4
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 1.6e-49 199.5 138 63.8
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 2.1e-49 199.1 159 55.3
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 2.8e-49 198.7 144 59.0
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.8e-49 198.7 133 68.4
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.8e-49 198.7 153 58.8
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.7e-49 198.0 135 66.7
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 8.1e-49 197.2 144 58.3
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 5.2e-48 194.5 120 68.3
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 5.2e-48 194.5 133 64.7
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 3.4e-47 191.8 135 65.9
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 4.4e-47 191.4 130 64.6
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 6.4e-46 187.6 124 66.9
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 3.2e-45 185.3 142 58.5
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 9.2e-45 183.7 159 54.1
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.6e-44 183.0 113 67.3
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.6e-44 183.0 113 67.3
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 4.7e-41 171.4 106 69.8
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 4.7e-41 171.4 123 61.8
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 1.1e-40 170.2 155 52.3
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 2.2e-38 162.5 174 47.1
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 1.0e-35 153.7 136 52.9
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.3e-35 153.3 117 54.7
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 1.9e-34 149.4 121 52.1
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 8.1e-33 144.1 124 53.2
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 2.4e-29 132.5 132 47.0
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 1.5e-26 123.2 84 63.1
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 3.1e-24 115.5 72 69.4
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 7.1e-21 104.4 59 76.3
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 1.2e-20 103.6 58 74.1
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 2.1e-17 92.8 135 42.2
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.1e-16 90.5 114 43.0
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 1.8e-16 89.7 102 44.1
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.6e-15 85.9 57 61.4
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.6e-15 84.3 81 46.9
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 4.9e-14 81.6 80 46.2
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 6.4e-14 81.3 80 46.2
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 8.4e-14 80.9 74 51.4
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 4.2e-13 78.6 111 37.8
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 1.8e-11 73.2 102 38.2
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 2.3e-11 72.8 75 45.3
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 6.7e-11 71.2 46 60.9
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 7.4e-10 67.8 40 65.0
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 7.4e-10 67.8 49 59.2
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 3.7e-09 65.5 64 51.6
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.1e-08 63.9 68 48.5
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.4e-08 63.5 61 54.1
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 1.4e-08 63.5 61 54.1


User provided reference genes

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