Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.2e-92 343.2 183 100.0
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.1e-67 260.4 188 75.0
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.9e-64 249.6 186 72.6
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 1.9e-64 249.6 190 71.1
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 2.4e-64 249.2 190 71.1
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 2.7e-63 245.7 190 70.5
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 7.8e-63 244.2 185 71.9
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 7.8e-63 244.2 185 71.9
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 7.8e-63 244.2 185 71.9
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-62 243.0 186 71.5
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 3.9e-62 241.9 188 72.9
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 8.6e-62 240.7 187 73.8
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 1.9e-61 239.6 186 70.4
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 4.3e-61 238.4 189 72.0
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.4e-59 233.4 193 70.5
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.7e-57 226.5 186 68.3
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 7.1e-56 221.1 186 67.2
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 6.0e-55 218.0 187 67.4
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.3e-54 216.1 187 63.6
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 3.0e-54 215.7 176 67.6
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 4.0e-51 205.3 162 69.8
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 2.9e-49 199.1 179 63.7
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.9e-49 199.1 187 63.1
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.1e-48 197.2 181 64.1
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 3.2e-48 195.7 186 62.4
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 1.6e-47 193.4 186 61.8
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 2.3e-46 189.5 186 61.3
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 2.5e-45 186.0 194 57.7
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 3.3e-45 185.7 196 56.6
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 2.8e-44 182.6 195 54.9
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 3.6e-44 182.2 187 55.1
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.4e-43 180.3 187 55.1
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 5.2e-43 178.3 195 53.3
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 6.9e-43 177.9 184 58.2
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.5e-42 176.8 185 56.8
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 2.0e-42 176.4 187 54.0
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.3e-41 173.7 186 54.8
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 4.9e-41 171.8 192 55.7
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 6.4e-41 171.4 184 56.0
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.9e-40 169.9 194 54.6
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 5.4e-40 168.3 187 56.7
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 3.5e-39 165.6 192 54.2
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.0e-39 164.9 191 51.8
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.3e-38 163.7 202 53.5
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 1.3e-38 163.7 194 51.5
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.7e-38 163.3 188 55.3
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 5.1e-38 161.8 184 53.8
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.6e-37 158.3 183 55.7
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 7.3e-37 157.9 182 53.8
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 9.6e-37 157.5 183 55.7
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 3.6e-36 155.6 194 49.0
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 4.8e-36 155.2 197 50.3
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 8.1e-36 154.5 200 50.5
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.1e-36 154.5 182 56.6
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 1.1e-35 154.1 211 51.2
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.1e-35 154.1 191 53.4
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 1.4e-35 153.7 218 45.4
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.8e-35 153.3 191 50.8
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 1.8e-35 153.3 206 47.6
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 2.4e-35 152.9 188 48.4
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 4.0e-35 152.1 191 50.3
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 5.3e-35 151.8 193 49.2
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 9.0e-35 151.0 209 46.9
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.5e-34 150.2 170 57.6
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.0e-34 149.8 207 46.9
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 4.5e-34 148.7 208 46.6
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 7.6e-34 147.9 196 48.5
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 7.6e-34 147.9 191 46.6
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 6.4e-33 144.8 178 52.2
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 6.4e-33 144.8 178 52.2
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 6.4e-33 144.8 197 46.2
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 8.4e-33 144.4 180 48.3
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.1e-32 144.1 211 45.5
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 1.1e-32 144.1 202 45.5
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.9e-32 143.3 178 51.7
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 5.4e-32 141.7 198 49.5
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 9.3e-32 141.0 216 43.1
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 2.1e-31 139.8 214 42.1
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.1e-31 139.8 192 45.3
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.7e-31 139.4 192 46.9
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 6.0e-31 138.3 210 42.4
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 7.9e-31 137.9 203 45.8
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 3.9e-30 135.6 203 42.9
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 3.9e-30 135.6 210 41.9
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.9e-30 135.6 192 45.8
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 5.1e-30 135.2 185 47.0
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 6.7e-30 134.8 213 42.3
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 6.7e-30 134.8 212 42.9
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 6.7e-30 134.8 165 50.3
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 6.7e-30 134.8 212 40.6
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 8.7e-30 134.4 223 39.9
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 1.9e-29 133.3 207 42.0
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.9e-29 133.3 197 43.7
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.9e-29 133.3 209 44.0
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.5e-29 132.9 213 43.2
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 3.3e-29 132.5 218 41.3
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 4.3e-29 132.1 183 48.1
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.4e-29 131.3 209 43.1
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 7.4e-29 131.3 199 44.7
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 1.3e-28 130.6 220 41.8
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 3.7e-28 129.0 170 50.0
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 8.1e-28 127.9 214 40.2
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.4e-27 127.1 208 41.8
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 3.1e-27 125.9 212 41.0
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 4.0e-27 125.6 189 42.9
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 6.9e-27 124.8 213 41.3
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.5e-26 123.6 189 42.9
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 2.0e-26 123.2 194 41.2
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 2.6e-26 122.9 201 42.3
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 4.5e-26 122.1 187 44.4
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 4.5e-26 122.1 194 45.4
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 7.6e-26 121.3 186 44.1
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-25 120.6 188 42.6
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-25 120.6 188 42.6
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.3e-25 120.6 188 42.6
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.3e-25 120.6 187 42.2
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.3e-25 120.6 203 41.4
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.7e-25 120.2 202 39.6
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 2.9e-25 119.4 185 41.6
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 2.9e-25 119.4 221 38.9
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 3.8e-25 119.0 188 42.0
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.8e-25 119.0 182 44.5
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 4.9e-25 118.6 165 47.9
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 6.4e-25 118.2 213 38.5
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.9e-24 116.7 207 41.5
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.4e-24 116.3 216 38.9
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 5.5e-24 115.2 190 40.5
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 7.1e-24 114.8 193 40.9
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.6e-23 113.6 196 42.9
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.7e-23 112.8 201 38.8
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.6e-23 112.1 199 39.7
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 6.0e-23 111.7 232 35.3
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 7.9e-23 111.3 192 40.6
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 7.9e-23 111.3 200 39.0
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 1.8e-22 110.2 195 42.6
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 2.3e-22 109.8 184 40.8
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 2.3e-22 109.8 184 40.8
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 8.7e-22 107.8 187 39.6
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 8.7e-22 107.8 206 37.4
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.1e-21 107.5 184 42.9
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.5e-21 107.1 187 39.6
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 5.6e-21 105.1 203 37.9
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 5.6e-21 105.1 239 33.5
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.3e-20 104.0 209 37.8
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.6e-20 103.6 246 36.2
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 4.8e-20 102.1 191 39.8
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 4.8e-20 102.1 191 39.8
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 8.2e-20 101.3 87 60.9
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 6.9e-19 98.2 188 39.4
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.5e-18 97.1 219 35.6
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.4e-18 95.9 194 41.2
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 5.8e-18 95.1 107 52.3
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 5.8e-18 95.1 199 37.2
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 2.2e-17 93.2 103 50.5
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 8.4e-17 91.3 76 61.8
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 7.1e-16 88.2 181 34.3
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 9.3e-16 87.8 180 38.9
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 9.3e-16 87.8 180 35.6
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 2.7e-15 86.3 223 34.1
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 5.1e-14 82.0 163 33.7
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 6.7e-14 81.6 157 39.5
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 3.3e-13 79.3 181 33.7
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 7.4e-13 78.2 201 31.8
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.8e-11 73.6 183 33.3
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 3.1e-11 72.8 74 55.4
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 9.0e-11 71.2 193 35.8
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 1.5e-10 70.5 75 53.3
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 2.0e-10 70.1 191 38.2
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 4.5e-10 68.9 174 32.8
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.4e-08 63.9 172 33.7
Zm00001eb359900 Zea mays HOM05D015480 ORTHO05D019326 1.9e-08 63.5 194 26.8
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 4.2e-08 62.4 171 34.5
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 3.6e-07 59.3 164 30.5
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 3.6e-07 59.3 200 27.0
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 6.1e-07 58.5 198 31.8
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.4e-06 57.4 219 30.1
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 3.9e-06 55.8 149 28.9
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 6.7e-06 55.1 67 43.3


User provided reference genes

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