Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 1.0e-91 340.1 175 100.0
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 5.3e-69 264.6 177 78.5
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 5.9e-68 261.2 178 76.4
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 2.2e-67 259.2 177 76.3
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 2.9e-67 258.8 177 76.8
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 6.5e-67 257.7 177 75.7
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 6.5e-67 257.7 177 75.7
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 2.5e-66 255.8 172 76.7
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 8.0e-65 250.8 177 75.1
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 2.3e-64 249.2 177 74.6
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 4.4e-63 245.0 177 75.7
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 2.8e-62 242.3 178 73.6
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 1.4e-61 240.0 175 73.7
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 5.3e-61 238.0 175 73.1
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 9.1e-61 237.3 175 72.0
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 4.5e-60 235.0 175 71.4
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 1.5e-55 219.9 176 69.3
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 2.2e-54 216.1 176 65.3
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 2.7e-49 199.1 171 60.8
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.0e-48 197.2 145 68.3
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.0e-48 197.2 145 68.3
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 3.0e-48 195.7 144 68.1
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.5e-47 193.4 145 66.2
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 9.8e-47 190.7 124 77.4
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 9.8e-47 190.7 168 58.3
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 6.3e-46 188.0 170 59.4
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 6.3e-46 188.0 140 67.1
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 6.3e-46 188.0 144 63.2
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.4e-45 186.8 151 60.9
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.4e-45 186.8 151 60.9
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 1.4e-45 186.8 169 57.4
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 1.8e-45 186.4 165 60.0
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.4e-45 186.0 150 62.0
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.1e-45 185.7 150 62.0
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 3.1e-45 185.7 161 60.2
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 4.1e-45 185.3 175 57.1
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 5.4e-45 184.9 171 56.1
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.4e-45 184.9 171 56.1
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 7.0e-45 184.5 147 63.9
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 7.0e-45 184.5 170 58.2
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 7.0e-45 184.5 145 63.4
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 9.1e-45 184.1 117 79.5
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 9.1e-45 184.1 169 57.4
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 9.1e-45 184.1 147 61.2
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 1.2e-44 183.7 144 63.2
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.2e-44 183.7 156 60.9
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 1.2e-44 183.7 157 57.3
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.2e-44 183.7 150 62.0
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.6e-44 183.3 144 66.0
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 1.6e-44 183.3 161 57.8
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 2.0e-44 183.0 172 56.4
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 2.0e-44 183.0 156 61.5
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 2.7e-44 182.6 145 64.1
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 3.5e-44 182.2 148 62.8
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 3.5e-44 182.2 142 63.4
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 4.5e-44 181.8 145 62.8
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 4.5e-44 181.8 143 65.0
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 4.5e-44 181.8 145 63.4
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 5.9e-44 181.4 146 63.0
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 7.7e-44 181.0 150 61.3
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 7.7e-44 181.0 147 61.2
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 7.7e-44 181.0 147 61.9
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 1.0e-43 180.6 151 60.3
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 1.0e-43 180.6 142 64.8
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 1.3e-43 180.3 146 63.7
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 1.7e-43 179.9 148 62.2
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 1.7e-43 179.9 168 58.9
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.7e-43 179.9 145 62.8
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.3e-43 179.5 147 63.3
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.9e-43 179.1 145 62.1
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 3.8e-43 178.7 151 61.6
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 5.0e-43 178.3 151 58.9
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 5.0e-43 178.3 178 56.2
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 8.6e-43 177.6 152 61.2
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 8.6e-43 177.6 142 64.8
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.1e-42 177.2 145 62.8
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 1.1e-42 177.2 157 57.3
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.9e-42 176.4 170 56.5
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 2.5e-42 176.0 143 62.2
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 9.5e-42 174.1 141 61.0
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.6e-41 173.3 145 60.7
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 2.1e-41 172.9 168 53.6
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 8.0e-41 171.0 186 52.2
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.0e-40 170.6 149 59.1
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 2.3e-40 169.5 138 61.6
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.3e-40 169.5 154 57.8
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 5.2e-40 168.3 177 53.1
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.2e-39 167.2 149 58.4
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 3.4e-39 165.6 147 59.2
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 4.4e-39 165.2 147 58.5
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 7.5e-39 164.5 236 42.4
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 7.5e-39 164.5 141 60.3
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 1.3e-38 163.7 169 52.7
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.7e-38 163.3 174 51.7
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 2.9e-38 162.5 123 64.2
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 2.9e-38 162.5 121 66.1
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 3.7e-38 162.2 151 53.6
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 3.7e-38 162.2 148 58.8
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 1.8e-37 159.8 143 58.7
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 3.2e-37 159.1 142 58.5
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 4.1e-37 158.7 146 57.5
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.6e-36 156.8 145 55.9
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 3.5e-36 155.6 148 54.1
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 4.6e-36 155.2 142 54.9
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 1.3e-35 153.7 170 51.8
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 3.9e-35 152.1 134 59.0
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 5.0e-35 151.8 123 63.4
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 6.6e-35 151.4 171 50.3
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 1.9e-34 149.8 144 52.8
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 7.3e-34 147.9 146 56.2
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 7.3e-34 147.9 150 52.0
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 6.2e-33 144.8 141 53.9
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 3.1e-32 142.5 153 52.3
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 4.0e-32 142.1 119 58.0
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 4.0e-32 142.1 200 42.0
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 2.0e-31 139.8 152 52.6
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 9.8e-31 137.5 121 57.0
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 5.4e-29 131.7 103 66.0
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 8.6e-27 124.4 116 58.6
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.5e-26 122.9 145 48.3
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 1.2e-25 120.6 128 51.6
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 1.2e-25 120.6 128 51.6
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 6.2e-25 118.2 151 43.7
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 8.1e-25 117.9 168 43.5
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 8.1e-25 117.9 146 43.8
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 8.1e-25 117.9 146 43.8
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 4.0e-24 115.5 101 56.4
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.0e-23 113.2 139 46.0
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 3.4e-23 112.5 268 31.3
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 9.8e-23 110.9 137 43.1
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 4.1e-21 105.5 201 37.3
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 7.1e-21 104.8 88 67.0
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 7.1e-21 104.8 120 50.0
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 1.3e-19 100.5 88 64.8
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 2.3e-19 99.8 88 65.9
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 2.3e-19 99.8 88 65.9
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 1.5e-18 97.1 88 63.6
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 9.5e-18 94.4 87 63.2
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 9.5e-18 94.4 87 63.2
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 1.5e-15 87.0 113 46.0
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 2.2e-14 83.2 170 35.9
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 3.9e-11 72.4 62 67.7
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 1.1e-10 70.9 80 50.0
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 1.1e-08 64.3 70 54.3
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 6.4e-06 55.1 48 56.2


User provided reference genes

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