Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 2.3e-105 385.6 196 100.0
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 3.3e-104 381.7 196 98.5
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 5.7e-104 380.9 196 98.0
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 7.5e-104 380.6 196 98.0
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 7.5e-104 380.6 196 98.0
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 7.5e-104 380.6 196 98.0
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 1.7e-103 379.4 196 98.0
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 2.2e-103 379.0 196 97.4
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 1.0e-100 370.2 190 98.4
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 1.7e-100 369.4 193 94.8
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 1.7e-100 369.4 193 95.9
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 3.8e-100 368.2 193 94.8
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 5.0e-100 367.9 193 94.8
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 5.0e-100 367.9 193 94.8
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 5.0e-100 367.9 193 94.8
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 6.5e-100 367.5 193 94.8
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 8.5e-100 367.1 193 94.8
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 8.5e-100 367.1 193 94.8
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 8.5e-100 367.1 193 94.3
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 8.5e-100 367.1 193 94.8
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 1.5e-99 366.3 193 94.3
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 1.5e-99 366.3 193 93.8
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 1.5e-99 366.3 193 94.3
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 1.5e-99 366.3 193 94.3
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 1.9e-99 365.9 193 94.3
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 1.9e-99 365.9 193 93.8
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 1.9e-99 365.9 193 94.3
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 1.9e-99 365.9 193 94.3
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 2.5e-99 365.5 193 93.8
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 2.5e-99 365.5 193 93.8
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 2.5e-99 365.5 193 94.8
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 3.2e-99 365.2 226 85.0
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 3.2e-99 365.2 193 93.8
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 3.2e-99 365.2 193 93.8
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 3.2e-99 365.2 193 93.8
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 4.2e-99 364.8 193 93.3
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 4.2e-99 364.8 193 93.8
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 4.2e-99 364.8 193 93.8
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 5.5e-99 364.4 193 93.3
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 7.2e-99 364.0 193 93.3
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 7.2e-99 364.0 193 92.7
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 7.2e-99 364.0 193 93.8
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 7.2e-99 364.0 193 93.8
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 9.4e-99 363.6 193 92.7
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 9.4e-99 363.6 193 93.8
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 1.2e-98 363.2 185 97.8
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 1.2e-98 363.2 185 97.8
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 1.2e-98 363.2 185 97.8
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 1.2e-98 363.2 186 97.8
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 1.2e-98 363.2 193 93.3
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 1.6e-98 362.8 193 92.2
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 1.6e-98 362.8 193 93.3
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 1.6e-98 362.8 193 93.3
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 1.6e-98 362.8 193 93.3
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 1.6e-98 362.8 193 94.8
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 2.7e-98 362.1 193 93.3
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 3.6e-98 361.7 185 97.8
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 3.6e-98 361.7 185 97.8
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 3.6e-98 361.7 193 92.2
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 4.7e-98 361.3 193 90.7
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 4.7e-98 361.3 192 92.7
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 4.7e-98 361.3 193 93.3
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 6.1e-98 360.9 193 92.2
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.1e-98 360.9 193 92.7
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.1e-98 360.9 193 92.7
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 6.1e-98 360.9 198 91.9
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 6.1e-98 360.9 193 91.7
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 8.0e-98 360.5 193 91.7
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 8.0e-98 360.5 193 92.7
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 1.0e-97 360.1 193 92.7
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 1.0e-97 360.1 193 91.2
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 1.8e-97 359.4 187 95.2
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.8e-97 359.4 193 92.2
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 2.3e-97 359.0 193 92.2
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 2.3e-97 359.0 193 90.7
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 2.3e-97 359.0 194 91.2
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 2.3e-97 359.0 194 91.2
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 3.0e-97 358.6 193 92.7
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 3.0e-97 358.6 193 92.7
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 6.8e-97 357.5 193 91.2
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 8.8e-97 357.1 186 95.2
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 8.8e-97 357.1 193 91.2
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 8.8e-97 357.1 193 90.7
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.5e-96 356.3 189 92.6
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 2.0e-96 355.9 193 90.7
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 2.0e-96 355.9 194 90.7
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.0e-96 355.9 193 90.7
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 2.6e-96 355.5 185 95.1
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 5.7e-96 354.4 189 92.6
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 5.7e-96 354.4 186 93.5
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 5.7e-96 354.4 187 93.0
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 9.8e-96 353.6 193 90.2
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 9.8e-96 353.6 185 94.6
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 9.8e-96 353.6 193 90.7
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 9.8e-96 353.6 194 90.7
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 1.3e-95 353.2 185 94.1
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 2.2e-95 352.4 185 94.1
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 2.2e-95 352.4 189 92.1
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 2.2e-95 352.4 188 92.0
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 2.2e-95 352.4 185 93.5
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 2.8e-95 352.1 193 89.6
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 2.4e-94 349.0 186 91.4
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 2.0e-93 345.9 186 90.3
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 2.9e-92 342.0 195 88.7
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 3.8e-92 341.7 218 80.7
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 7.2e-91 337.4 216 80.1
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 2.8e-90 335.5 193 85.5
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 3.6e-90 335.1 224 79.0
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 3.0e-89 332.0 193 86.0
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 4.0e-89 331.6 193 85.5
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 5.7e-88 327.8 193 85.0
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 1.4e-86 323.2 174 92.5
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 7.8e-85 317.4 193 83.4
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 2.3e-84 315.8 193 78.2
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 8.6e-84 313.9 193 79.3
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 4.4e-80 301.6 193 81.9
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 2.9e-79 298.9 193 80.8
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 3.7e-79 298.5 193 80.3
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 6.4e-79 297.7 193 79.8
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 5.4e-78 294.7 193 79.3
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 6.6e-76 287.7 186 80.1
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 6.6e-76 287.7 186 80.1
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 3.3e-75 285.4 166 84.9
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 4.3e-75 285.0 186 79.6
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 4.3e-75 285.0 150 96.0
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 3.7e-71 271.9 194 72.2
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 7.3e-67 257.7 134 94.0
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 1.2e-61 240.4 180 65.6
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 6.0e-61 238.0 141 81.6
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 1.9e-59 233.0 124 93.5
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 9.5e-59 230.7 180 68.3
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.1e-54 217.2 126 88.1
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.4e-54 216.9 123 87.0
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 2.7e-53 212.6 148 75.0
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 8.1e-50 201.1 186 63.4
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 1.2e-45 187.2 188 50.5
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 1.6e-42 176.8 91 94.5
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 8.1e-42 174.5 171 50.9
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.7e-39 166.8 123 72.4
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 6.4e-39 164.9 83 96.4
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.9e-35 153.3 75 98.7
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 5.6e-35 151.8 75 97.3
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 9.0e-33 144.4 77 92.2
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.1e-27 127.5 70 90.0
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.5e-27 126.3 70 88.6
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 9.3e-22 107.8 58 86.2
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 5.1e-20 102.1 54 90.7
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 2.8e-18 96.3 109 54.1
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 2.4e-17 93.2 109 51.4
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 5.0e-15 85.5 47 83.0
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 8.5e-15 84.7 90 55.6
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.1e-14 84.3 104 50.0
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.4e-14 84.0 42 95.2
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 2.7e-13 79.7 52 71.2
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 1.4e-12 77.4 47 85.1
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.3e-12 76.6 57 68.4
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 8.8e-12 74.7 46 82.6
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 1.3e-10 70.9 43 79.1
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 1.3e-10 70.9 43 79.1
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 8.5e-07 58.2 39 74.4
MELO3C033919.2 Cucumis melo HOM05D004575 ORTHO05D168156 9.4e-06 54.7 69 43.5


User provided reference genes

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