Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 1.4e-124 449.9 271 100.0
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 6.7e-87 324.7 227 79.3
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 1.1e-86 323.9 228 77.2
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 1.0e-82 310.8 249 72.7
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 1.0e-82 310.8 249 72.7
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 2.2e-82 309.7 229 76.9
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 3.8e-82 308.9 231 74.5
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 8.5e-82 307.8 230 76.1
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 6.1e-80 301.6 256 69.9
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 3.9e-79 298.9 227 73.6
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 2.6e-78 296.2 250 70.8
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 4.8e-77 292.0 256 68.8
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 1.4e-76 290.4 227 73.1
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 5.0e-74 282.0 233 71.7
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 4.0e-71 272.3 233 67.0
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 5.2e-71 271.9 203 74.9
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 6.7e-71 271.6 203 74.9
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 5.9e-59 231.9 215 70.2
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 5.9e-59 231.9 177 75.1
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 2.3e-58 229.9 256 55.5
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 2.5e-57 226.5 219 61.6
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 8.0e-56 221.5 255 56.9
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 2.3e-55 219.9 251 56.2
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 4.0e-55 219.2 239 56.1
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 8.9e-55 218.0 239 55.6
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 1.5e-54 217.2 221 57.9
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 3.4e-54 216.1 238 55.9
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 7.5e-54 214.9 229 55.5
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 1.3e-53 214.2 241 55.6
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 2.8e-53 213.0 223 56.1
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.7e-53 212.6 241 55.2
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 1.1e-52 211.1 182 68.7
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.4e-52 209.9 219 55.7
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 5.4e-52 208.8 160 76.9
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 9.2e-52 208.0 219 56.6
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.6e-51 207.2 221 56.6
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 2.7e-51 206.5 219 56.2
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 2.7e-51 206.5 246 52.4
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 3.5e-51 206.1 255 54.1
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 4.5e-51 205.7 247 55.5
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.5e-51 205.7 221 55.2
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.0e-50 204.5 219 55.3
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 2.9e-50 203.0 218 55.5
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 2.9e-50 203.0 249 51.8
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 2.9e-50 203.0 252 52.4
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 5.0e-50 202.2 239 53.6
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 5.0e-50 202.2 212 57.1
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.5e-49 200.7 240 51.2
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 1.5e-49 200.7 242 53.3
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.5e-49 200.7 218 56.0
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.5e-49 200.7 208 56.2
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 1.9e-49 200.3 204 58.3
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 3.3e-49 199.5 149 73.8
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 3.3e-49 199.5 252 50.8
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 4.3e-49 199.1 244 51.6
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 4.3e-49 199.1 245 51.0
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 5.6e-49 198.7 218 54.1
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 1.6e-48 197.2 156 70.5
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.1e-48 196.8 240 51.2
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 2.1e-48 196.8 234 57.7
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 2.1e-48 196.8 213 56.8
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 2.1e-48 196.8 218 55.0
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 2.1e-48 196.8 218 55.5
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 4.7e-48 195.7 247 51.8
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 4.7e-48 195.7 242 50.4
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 4.7e-48 195.7 224 55.8
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 4.7e-48 195.7 222 54.5
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 6.1e-48 195.3 250 49.2
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 8.0e-48 194.9 210 55.2
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 1.8e-47 193.7 199 56.8
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 1.8e-47 193.7 251 47.8
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 6.8e-47 191.8 224 53.6
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 8.9e-47 191.4 212 54.2
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 1.2e-46 191.0 192 57.3
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 1.2e-46 191.0 246 49.6
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 2.6e-46 189.9 227 52.0
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 3.4e-46 189.5 236 51.3
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 3.4e-46 189.5 236 51.3
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 4.4e-46 189.1 236 51.3
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 7.5e-46 188.3 206 53.4
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 9.8e-46 188.0 240 48.8
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 9.8e-46 188.0 216 53.2
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 1.3e-45 187.6 244 50.4
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 1.3e-45 187.6 238 52.9
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 2.9e-45 186.4 219 51.6
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 8.3e-45 184.9 216 50.9
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 1.4e-44 184.1 190 57.4
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.9e-44 183.7 182 57.1
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 1.9e-44 183.7 238 47.5
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 5.4e-44 182.2 226 52.2
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 9.2e-44 181.4 219 49.8
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 6.0e-43 178.7 181 55.8
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 7.8e-43 178.3 195 52.8
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 2.3e-42 176.8 214 51.9
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 5.0e-42 175.6 246 49.2
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 5.0e-42 175.6 177 55.9
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 8.6e-42 174.9 201 52.7
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 1.5e-41 174.1 225 50.2
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.9e-41 173.7 220 50.5
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 5.6e-41 172.2 226 48.7
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 4.7e-40 169.1 245 44.5
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 4.7e-40 169.1 220 49.5
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 8.0e-40 168.3 243 46.5
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 4.0e-39 166.0 201 50.2
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.5e-38 164.1 260 42.3
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.6e-38 163.3 181 53.0
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 5.8e-38 162.2 165 53.3
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 1.3e-37 161.0 226 46.9
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 1.3e-37 161.0 180 50.6
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 2.2e-37 160.2 147 59.9
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 1.1e-36 157.9 246 41.5
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 2.4e-36 156.8 254 41.3
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 2.4e-36 156.8 115 69.6
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 3.2e-36 156.4 261 43.7
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 2.1e-35 153.7 226 46.5
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 4.6e-35 152.5 251 45.0
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.0e-34 151.4 218 45.9
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 3.0e-34 149.8 224 45.5
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 3.0e-34 149.8 207 46.4
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.9e-33 147.1 243 41.6
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 4.3e-33 146.0 171 52.0
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 9.5e-33 144.8 131 60.3
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 4.7e-32 142.5 116 72.4
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 8.1e-32 141.7 182 50.5
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 6.8e-31 138.7 179 48.6
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.0e-30 137.1 200 47.0
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 2.6e-30 136.7 214 44.9
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 3.7e-29 132.9 135 57.8
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 4.3e-25 119.4 101 72.3
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 1.1e-23 114.8 181 44.2
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 3.1e-23 113.2 143 49.7
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 6.8e-23 112.1 221 38.5
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 2.2e-21 107.1 104 54.8
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 1.9e-20 104.0 137 48.2
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 3.3e-17 93.2 211 31.3
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 4.3e-17 92.8 66 71.2
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 8.1e-16 88.6 226 31.0
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 9.0e-15 85.1 168 37.5
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 3.4e-14 83.2 189 33.3
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 2.9e-13 80.1 117 43.6
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.6e-11 74.3 108 46.3
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 8.7e-10 68.6 130 33.1
Sed0017061 Sechium edule HOM05D002282 ORTHO05D002403 1.1e-07 61.6 146 31.5
ClCG06G004860 Citrullus lanatus HOM05D002282 ORTHO05D002403 3.1e-07 60.1 102 37.3
FAN05G0042 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.1e-07 60.1 245 26.5
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 3.1e-07 60.1 186 30.1
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 4.0e-07 59.7 234 26.5
RcHm_v2.0_Chr4g0423831 Rosa chinensis HOM05D002282 ORTHO05D002403 6.9e-07 58.9 243 24.3
FAN02G0515 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.5e-06 57.8 243 26.3
CsaV3_6G022650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 2.6e-06 57.0 93 36.6
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 7.6e-06 55.5 57 52.6
MELO3C021295.2 Cucumis melo HOM05D002282 ORTHO05D002403 9.9e-06 55.1 93 35.5
FAN09G1184 Fragaria x ananassa HOM05D002282 ORTHO05D002403 9.9e-06 55.1 245 26.1
MD13G1161900 Malus domestica HOM05D002282 ORTHO05D002403 9.9e-06 55.1 213 25.4
Prupe.1G129200 Prunus persica HOM05D002282 ORTHO05D002403 9.9e-06 55.1 247 25.5


User provided reference genes

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