Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 1.4e-72 276.2 137 100.0
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 5.9e-39 164.5 136 65.4
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 1.3e-38 163.3 139 66.2
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 1.3e-38 163.3 139 66.2
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 1.1e-37 160.2 139 65.5
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 1.1e-37 160.2 139 65.5
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 2.5e-37 159.1 139 64.7
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 2.5e-37 159.1 139 66.9
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 2.7e-36 155.6 131 66.4
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 2.8e-33 145.6 138 60.1
C09p49280 Brassica napus HOM05D007262 ORTHO05D008524 1.8e-32 142.9 139 61.9
BolC9t57779H Brassica oleracea HOM05D007262 ORTHO05D008524 1.8e-32 142.9 139 61.9
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 2.4e-32 142.5 112 67.0
BcaC04g19970 Brassica carinata HOM05D007262 ORTHO05D008524 7.0e-32 141.0 139 61.2
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 9.1e-32 140.6 120 64.2
BraA10t43564Z Brassica rapa HOM05D007262 ORTHO05D008524 7.2e-29 131.0 139 59.0
A10p14860 Brassica napus HOM05D007262 ORTHO05D008524 9.4e-29 130.6 139 59.0
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 2.1e-28 129.4 120 61.7
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 7.4e-26 120.9 115 64.3
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 3.7e-17 92.0 108 51.9
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 1.8e-16 89.7 108 53.7
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 3.1e-16 89.0 107 51.4
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 3.1e-16 89.0 107 51.4
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 1.2e-15 87.0 93 55.9
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 1.2e-15 87.0 108 52.8
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 2.0e-15 86.3 108 52.8
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 5.9e-15 84.7 108 52.8
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 7.7e-15 84.3 108 50.9
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 7.7e-15 84.3 108 50.9
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 1.0e-14 84.0 108 50.9
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 2.2e-14 82.8 109 49.5
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 1.1e-13 80.5 112 50.0
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 4.2e-13 78.6 107 49.5
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 5.5e-13 78.2 93 49.5
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 7.2e-13 77.8 120 42.5
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 1.6e-12 76.6 92 50.0
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 2.1e-12 76.3 107 46.7
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 2.7e-12 75.9 103 43.7
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 3.6e-12 75.5 101 44.6
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 3.6e-12 75.5 105 42.9
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 8.0e-12 74.3 94 46.8
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 1.0e-11 73.9 91 50.5
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 1.8e-11 73.2 62 66.1
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 1.8e-11 73.2 94 50.0
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 1.8e-11 73.2 103 46.6
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 2.3e-11 72.8 75 53.3
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 2.3e-11 72.8 111 42.3
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 4.0e-11 72.0 110 41.8
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 5.2e-11 71.6 94 46.8
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 8.8e-11 70.9 87 47.1
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 8.8e-11 70.9 120 41.7
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 1.5e-10 70.1 67 58.2
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 2.0e-10 69.7 98 45.9
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 2.0e-10 69.7 95 47.4
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 2.6e-10 69.3 93 49.5
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 3.4e-10 68.9 109 47.7
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 3.4e-10 68.9 62 64.5
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 5.7e-10 68.2 92 46.7
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 7.5e-10 67.8 101 37.6
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 9.8e-10 67.4 92 42.4
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.3e-09 67.0 93 46.2
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.3e-09 67.0 93 41.9
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 2.8e-09 65.9 64 51.6
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 3.7e-09 65.5 100 48.0
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 4.8e-09 65.1 85 43.5
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 6.3e-09 64.7 70 51.4
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 6.3e-09 64.7 69 47.8
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 1.1e-08 63.9 67 52.2
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 1.1e-08 63.9 79 48.1
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.8e-08 63.2 120 35.8
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 2.4e-08 62.8 65 55.4
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 4.1e-08 62.0 90 42.2
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 5.4e-08 61.6 84 52.4
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 5.4e-08 61.6 90 43.3
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 7.0e-08 61.2 101 38.6
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 7.0e-08 61.2 107 39.3
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 1.2e-07 60.5 106 42.5
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 1.6e-07 60.1 140 32.9
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 1.6e-07 60.1 68 48.5
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 2.7e-07 59.3 109 38.5
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 3.5e-07 58.9 101 37.6
Cpa.g.sc233.5 Carica papaya HOM05D018436 ORTHO05D008524 5.9e-07 58.2 93 39.8
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 7.7e-07 57.8 98 34.7
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 7.7e-07 57.8 68 44.1
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 1.0e-06 57.4 105 43.8
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 1.3e-06 57.0 74 50.0
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 1.3e-06 57.0 66 48.5
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 1.3e-06 57.0 92 40.2
SGA_v2.0_scaffold69G23249 Striga asiatica HOM05D007262 ORTHO05D008524 1.3e-06 57.0 84 41.7
CSS0043215 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 2.3e-06 56.2 86 44.2
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 2.3e-06 56.2 59 49.2
CSS0032322 Camellia sinensis var. sinensis HOM05D002277 ORTHO05D001770 3.8e-06 55.5 78 42.3
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 5.0e-06 55.1 112 37.5
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 5.0e-06 55.1 91 40.7
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 6.6e-06 54.7 66 45.5
LjContig00357g0012454 Lotus japonicus HOM05D002277 ORTHO05D001770 6.6e-06 54.7 62 43.5
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 6.6e-06 54.7 59 49.2
TPR.G649 Trifolium pratense HOM05D002277 ORTHO05D001770 6.6e-06 54.7 58 50.0
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 8.6e-06 54.3 62 46.8
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 8.6e-06 54.3 81 42.0
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 8.6e-06 54.3 84 40.5


User provided reference genes

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