Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G13120 Aethionema arabicum HOM05D006321 ORTHO05D007929 4.1e-92 341.3 161 100.0
BcaC04g19986 Brassica carinata HOM05D006321 ORTHO05D007929 1.6e-88 329.3 161 95.0
Thhalv10014893m.g Eutrema salsugineum HOM05D006321 ORTHO05D007929 2.1e-88 328.9 161 95.0
A10p14640 Brassica napus HOM05D006321 ORTHO05D007929 8.0e-88 327.0 161 94.4
BraA10t43551Z Brassica rapa HOM05D006321 ORTHO05D007929 8.0e-88 327.0 161 94.4
BcaB08g36085 Brassica carinata HOM05D006321 ORTHO05D007929 1.8e-87 325.9 161 94.4
Carub.0008s1773 Capsella rubella HOM05D006321 ORTHO05D007929 1.8e-87 325.9 161 93.2
AL8G33200 Arabidopsis lyrata HOM05D006321 ORTHO05D007929 2.3e-87 325.5 161 93.2
Sp6g18970 Schrenkiella parvula HOM05D006321 ORTHO05D007929 5.2e-87 324.3 161 93.2
AT5G57230 Arabidopsis thaliana HOM05D006321 ORTHO05D007929 2.0e-86 322.4 161 91.9
C09p49090 Brassica napus HOM05D006321 ORTHO05D007929 5.8e-86 320.9 169 89.9
CARHR271020 Cardamine hirsuta HOM05D006321 ORTHO05D007929 9.8e-86 320.1 161 91.3
BolC9t57758H Brassica oleracea HOM05D006321 ORTHO05D007929 2.9e-85 318.5 167 89.8
COL.COLO4_27457 Corchorus olitorius HOM05D006321 ORTHO05D007929 2.4e-76 288.9 161 80.7
THA.LOC104817778 Tarenaya hassleriana HOM05D006321 ORTHO05D007929 7.1e-76 287.3 162 81.5
Glyma.01G110600 Glycine max HOM05D006321 ORTHO05D007929 2.7e-75 285.4 161 78.3
Nitab4.5_0002365g0010 Nicotiana tabacum HOM05D006321 ORTHO05D007929 2.3e-74 282.3 161 76.4
Duzib251G0486 Durio zibethinus HOM05D006321 ORTHO05D007929 3.9e-74 281.6 162 79.6
Nitab4.5_0000366g0180 Nicotiana tabacum HOM05D006321 ORTHO05D007929 5.1e-74 281.2 161 77.0
TPR.G32885 Trifolium pratense HOM05D006321 ORTHO05D007929 5.1e-74 281.2 161 78.3
Dinv25432 Davidia involucrata HOM05D006321 ORTHO05D007929 8.6e-74 280.4 161 77.0
Sc03g0007150 Simmondsia chinensis HOM05D006321 ORTHO05D007929 8.6e-74 280.4 161 77.0
Lalb_Chr04g0263391 Lupinus albus HOM05D006321 ORTHO05D007929 1.5e-73 279.6 159 75.5
Potri.018G143500 Populus trichocarpa HOM05D006321 ORTHO05D007929 1.5e-73 279.6 162 79.6
CiPaw.08G033200 Carya illinoinensis HOM05D006321 ORTHO05D007929 1.9e-73 279.3 161 76.4
Gohir.A06G171500 Gossypium hirsutum HOM05D006321 ORTHO05D007929 1.9e-73 279.3 159 79.2
Gorai.010G210200 Gossypium raimondii HOM05D006321 ORTHO05D007929 1.9e-73 279.3 159 79.2
VMungo0540G0928 Vigna mungo HOM05D006321 ORTHO05D007929 1.9e-73 279.3 161 78.3
Glyma.03G076300 Glycine max HOM05D006321 ORTHO05D007929 3.3e-73 278.5 161 75.8
QL02p047686 Quercus lobata HOM05D006321 ORTHO05D007929 3.3e-73 278.5 160 74.4
CSS0046955 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 7.3e-73 277.3 158 76.6
Gohir.D06G179600 Gossypium hirsutum HOM05D006321 ORTHO05D007929 7.3e-73 277.3 159 78.6
Medtr3g465100 Medicago truncatula HOM05D006321 ORTHO05D007929 1.2e-72 276.6 161 75.8
Solyc07g008910.3 Solanum lycopersicum HOM05D006321 ORTHO05D007929 1.6e-72 276.2 158 74.7
Manes.02G106300 Manihot esculenta HOM05D006321 ORTHO05D007929 2.1e-72 275.8 161 76.4
Rhsim01G0118600 Rhododendron simsii HOM05D006321 ORTHO05D007929 2.1e-72 275.8 161 73.9
Thecc.09G184700 Theobroma cacao HOM05D006321 ORTHO05D007929 2.1e-72 275.8 156 79.5
arahy.Tifrunner.gnm1.ann1.CI6UTV Arachis hypogaea HOM05D006321 ORTHO05D007929 2.8e-72 275.4 159 76.1
CAN.G547.21 Capsicum annuum HOM05D006321 ORTHO05D007929 3.6e-72 275.0 158 75.3
Phvul.006G013600 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 3.6e-72 275.0 161 77.6
PGSC0003DMG400028738 Solanum tuberosum HOM05D006321 ORTHO05D007929 4.7e-72 274.6 158 75.3
CSS0021189 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 6.2e-72 274.2 158 75.3
CAN.G279.32 Capsicum annuum HOM05D006321 ORTHO05D007929 6.2e-72 274.2 158 75.3
Ca_14974_v3 Cicer arietinum L. HOM05D006321 ORTHO05D007929 6.2e-72 274.2 161 75.8
COL.COLO4_07534 Corchorus olitorius HOM05D006321 ORTHO05D007929 6.2e-72 274.2 148 83.1
Aqoxy3G01064 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 8.1e-72 273.9 161 73.3
Psat4g027120 Pisum sativum HOM05D006321 ORTHO05D007929 8.1e-72 273.9 161 75.2
CSS0019729 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 1.1e-71 273.5 158 75.3
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 1.1e-71 273.5 160 75.0
Sed0024765 Sechium edule HOM05D006321 ORTHO05D007929 1.8e-71 272.7 154 76.6
Phvul.003G138800 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 2.4e-71 272.3 161 75.8
Phvul.003G139178 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 2.4e-71 272.3 161 75.8
Ciclev10008911m.g Citrus clementina HOM05D006321 ORTHO05D007929 6.8e-71 270.8 160 73.8
TWI60G1509 Tripterygium wilfordii HOM05D006321 ORTHO05D007929 8.9e-71 270.4 161 72.7
FvH4_4g07380 Fragaria vesca HOM05D006321 ORTHO05D007929 2.0e-70 269.2 158 75.9
FAN12G2844 Fragaria x ananassa HOM05D006321 ORTHO05D007929 2.0e-70 269.2 158 75.9
FAN22G1279 Fragaria x ananassa HOM05D006321 ORTHO05D007929 2.0e-70 269.2 158 75.9
Migut.L01889 Erythranthe guttata HOM05D006321 ORTHO05D007929 3.4e-70 268.5 158 75.9
Potri.006G076300 Populus trichocarpa HOM05D006321 ORTHO05D007929 3.4e-70 268.5 162 75.9
RcHm_v2.0_Chr4g0399821 Rosa chinensis HOM05D006321 ORTHO05D007929 4.4e-70 268.1 161 73.3
MSTRG.10445 Avicennia marina HOM05D006321 ORTHO05D007929 5.8e-70 267.7 161 75.2
Eucgr.C00122 Eucalyptus grandis HOM05D006321 ORTHO05D007929 5.8e-70 267.7 159 72.3
arahy.Tifrunner.gnm1.ann1.N3I1N2 Arachis hypogaea HOM05D006321 ORTHO05D007929 7.6e-70 267.3 152 77.0
Cc06_g21570 Coffea canephora HOM05D006321 ORTHO05D007929 7.6e-70 267.3 161 73.9
MELO3C012967.2 Cucumis melo HOM05D006321 ORTHO05D007929 9.9e-70 266.9 154 76.0
Atru.chr7.791 Acer truncatum HOM05D006321 ORTHO05D007929 1.7e-69 266.2 161 72.7
EL10Ac5g11827 Beta vulgaris HOM05D006321 ORTHO05D007929 2.9e-69 265.4 161 71.4
CsaV3_3G025050 Cucumis sativus L. HOM05D006321 ORTHO05D007929 2.9e-69 265.4 154 76.0
CANSAT11G0316 Cannabis sativa HOM05D006321 ORTHO05D007929 1.1e-68 263.5 162 72.8
TAR622G0244 Trochodendron aralioides HOM05D006321 ORTHO05D007929 1.1e-68 263.5 161 72.7
FAN07G2214 Fragaria x ananassa HOM05D006321 ORTHO05D007929 1.4e-68 263.1 152 77.0
GSVIVG01010872001 Vitis vinifera HOM05D006321 ORTHO05D007929 1.4e-68 263.1 155 74.8
Lj6g0010246 Lotus japonicus HOM05D006321 ORTHO05D007929 2.4e-68 262.3 161 73.9
Prupe.1G076700 Prunus persica HOM05D006321 ORTHO05D007929 2.4e-68 262.3 161 71.4
AUR62030699 Chenopodium quinoa HOM05D006321 ORTHO05D007929 4.1e-68 261.5 161 67.7
HanXRQChr16g0529271 Helianthus annuus HOM05D006321 ORTHO05D007929 5.4e-68 261.2 161 70.2
AUR62030694 Chenopodium quinoa HOM05D006321 ORTHO05D007929 9.2e-68 260.4 161 67.1
Os06g0482200 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 9.2e-68 260.4 155 73.5
ECA240G2363 Erigeron canadensis HOM05D006321 ORTHO05D007929 1.2e-67 260.0 161 72.0
MBI17_g07973_MAGBIO Magnolia biondii HOM05D006321 ORTHO05D007929 1.6e-67 259.6 158 72.2
PSO339G6079 Papaver somniferum HOM05D006321 ORTHO05D007929 1.6e-67 259.6 162 71.6
HanXRQChr03g0068421 Helianthus annuus HOM05D006321 ORTHO05D007929 3.5e-67 258.5 152 73.7
PGR142G1933 Punica granatum HOM05D006321 ORTHO05D007929 3.5e-67 258.5 161 71.4
Lsat_1_v5_gn_7_55681 Lactuca sativa HOM05D006321 ORTHO05D007929 4.6e-67 258.1 160 73.8
ECA234G0872 Erigeron canadensis HOM05D006321 ORTHO05D007929 7.8e-67 257.3 161 71.4
HPP92_002000 Vanilla planifolia HOM05D006321 ORTHO05D007929 7.8e-67 257.3 157 71.3
SGA_v2.0_scaffold21G09650 Striga asiatica HOM05D006321 ORTHO05D007929 1.7e-66 256.1 158 71.5
Os10g0162834 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 3.9e-66 255.0 155 71.6
PSO384G3851 Papaver somniferum HOM05D006321 ORTHO05D007929 1.5e-65 253.1 162 69.1
Cpa.g.sc95.16 Carica papaya HOM05D006321 ORTHO05D007929 3.6e-64 248.4 161 71.4
Hund14984 Selenicereus undatus HOM05D006321 ORTHO05D007929 3.6e-64 248.4 214 53.7
Actinidia01283 Actinidia chinensis HOM05D006321 ORTHO05D007929 4.7e-64 248.1 161 72.7
MD16G1249800 Malus domestica HOM05D006321 ORTHO05D007929 6.2e-64 247.7 148 76.4
Zm00001eb161640 Zea mays HOM05D006321 ORTHO05D007929 9.0e-63 243.8 149 71.1
Ah.12g059430 Amaranthus hybridus HOM05D006321 ORTHO05D007929 2.0e-62 242.7 156 68.6
CDE06G2300 Ceratophyllum demersum HOM05D006321 ORTHO05D007929 2.4e-60 235.7 138 75.4
Nn2g12444 Nelumbo nucifera HOM05D006321 ORTHO05D007929 3.2e-60 235.3 135 77.8
Sopen07g004840 Solanum pennellii HOM05D003168 ORTHO05D003590 4.2e-60 235.0 135 75.6
AUR62036340 Chenopodium quinoa HOM05D006321 ORTHO05D007929 1.2e-59 233.4 135 72.6
SEGI_34333 Sequoiadendron giganteum HOM05D006321 ORTHO05D007929 6.0e-59 231.1 155 64.5
unitig_736.g22252 Utricularia gibba HOM05D006321 ORTHO05D007929 1.7e-58 229.6 138 71.0
MD13G1243200 Malus domestica HOM05D006321 ORTHO05D007929 1.1e-55 220.3 138 71.7
Haze_22010 Corylus avellana HOM05D006321 ORTHO05D007929 2.4e-55 219.2 151 68.2
Sabra18G0117000 Salix brachista HOM05D003168 ORTHO05D003525 4.5e-54 214.9 117 81.2
Psat5g235880 Pisum sativum HOM05D006321 ORTHO05D007929 8.4e-53 210.7 121 75.2
Mapoly0003s0233 Marchantia polymorpha HOM05D006321 ORTHO05D007929 1.2e-51 206.8 141 62.4
vmacro20823 Vaccinium macrocarpon HOM05D006321 ORTHO05D007929 2.7e-51 205.7 119 75.6
Sabra06G0057200 Salix brachista HOM05D006321 ORTHO05D007929 3.0e-50 202.2 183 56.3
Oeu044678.1 Olea europaea HOM05D006321 ORTHO05D007929 5.1e-50 201.4 114 76.3
Pp3c22_13020 Physcomitrium patens HOM05D006321 ORTHO05D007929 6.7e-50 201.1 153 58.2
Mapoly0003s0169 Marchantia polymorpha HOM05D006321 ORTHO05D007929 8.7e-50 200.7 141 61.0
Migut.G01073 Erythranthe guttata HOM05D006321 ORTHO05D007929 4.3e-49 198.4 116 76.7
Oeu030095.1 Olea europaea HOM05D006321 ORTHO05D007929 1.3e-48 196.8 115 75.7
BcaB05g22329 Brassica carinata HOM05D006321 ORTHO05D007929 2.1e-48 196.1 157 68.8
PSO541G2755 Papaver somniferum HOM05D006321 ORTHO05D007929 9.0e-47 190.7 114 73.7
Peaxi162Scf00324g00017 Petunia axillaris HOM05D006321 ORTHO05D007929 1.5e-46 189.9 118 71.2
FAN17G2672 Fragaria x ananassa HOM05D006321 ORTHO05D007929 4.5e-46 188.3 156 59.0
ATR1152G025 Amborella trichopoda HOM05D006321 ORTHO05D007929 4.2e-44 181.8 96 79.2
Lj6A87G16 Lonicera japonica HOM05D006321 ORTHO05D007929 5.5e-44 181.4 95 82.1
Aqoxy108s003 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 9.3e-44 180.6 132 59.1
DCAR_005801 Daucus carota HOM05D006321 ORTHO05D007929 1.3e-40 170.2 100 73.0
COL.COLO4_32845 Corchorus olitorius HOM05D006321 ORTHO05D007929 4.2e-36 155.2 85 83.5
CBR_g19745 Chara braunii HOM05D006321 ORTHO05D007929 1.6e-35 153.3 132 55.3
Dinv41168 Davidia involucrata HOM05D000015 ORTHO05D003525 7.4e-33 144.4 86 76.7
TAR629G2308 Trochodendron aralioides HOM05D006321 ORTHO05D007929 3.1e-31 139.0 135 52.6
Lj6A100T20 Lonicera japonica HOM05D006321 ORTHO05D007929 1.6e-27 126.7 73 78.1
BolC2t07570H Brassica oleracea HOM05D006321 ORTHO05D007929 9.1e-23 110.9 60 88.3
Sopen00g012850 Solanum pennellii HOM05D006321 ORTHO05D007929 2.3e-18 96.3 52 75.0
C02p14450 Brassica napus HOM05D006321 ORTHO05D007929 1.5e-14 83.6 71 62.0


User provided reference genes

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