Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G12850 Aethionema arabicum HOM05D004059 ORTHO05D004591 8.0e-264 913.3 489 100.0
AT5G56960 Arabidopsis thaliana HOM05D004059 ORTHO05D004591 1.9e-172 609.8 541 67.8
BcaC03g14194 Brassica carinata HOM05D004059 ORTHO05D004591 1.0e-165 587.4 540 67.8
C02p14760 Brassica napus HOM05D004059 ORTHO05D004591 1.0e-165 587.4 540 67.8
BolC2t07605H Brassica oleracea HOM05D004059 ORTHO05D004591 3.8e-165 585.5 545 67.2
Carub.0008s1744 Capsella rubella HOM05D004059 ORTHO05D004591 1.5e-161 573.5 545 64.6
A02p08850 Brassica napus HOM05D004059 ORTHO05D004591 2.8e-152 542.7 540 63.3
AL8G32820 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 6.5e-149 531.6 471 68.4
THA.LOC104818114 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 2.7e-147 526.2 530 60.8
BraA02t05954Z Brassica rapa HOM05D004059 ORTHO05D004591 1.2e-145 520.8 541 59.9
CARHR270700 Cardamine hirsuta HOM05D004059 ORTHO05D004591 5.5e-140 501.9 467 67.7
C09p48620 Brassica napus HOM05D004059 ORTHO05D004591 1.6e-126 457.2 516 56.4
Thhalv10013360m.g Eutrema salsugineum HOM05D004059 ORTHO05D004591 2.0e-126 456.8 496 60.7
BcaB05g22300 Brassica carinata HOM05D004059 ORTHO05D004591 4.4e-105 386.0 451 56.5
Sp6g18670 Schrenkiella parvula HOM05D004059 ORTHO05D004591 5.8e-89 332.4 393 58.8
BcaB08g36035 Brassica carinata HOM05D004059 ORTHO05D004591 6.4e-88 328.9 448 52.9
Cpa.g.sc61.16 Carica papaya HOM05D004059 ORTHO05D004591 1.0e-85 321.6 513 45.2
TAR636G3314 Trochodendron aralioides HOM05D004059 ORTHO05D004591 1.9e-84 317.4 533 39.6
Hma1.2p1_1838F.1_g304870 Hydrangea macrophylla HOM05D004059 ORTHO05D004591 8.1e-83 312.0 541 41.2
Dinv36776 Davidia involucrata HOM05D004059 ORTHO05D004591 1.1e-82 311.6 552 41.7
BcaC04g20035 Brassica carinata HOM05D004059 ORTHO05D004591 5.3e-82 309.3 427 51.5
TAR624G0558 Trochodendron aralioides HOM05D004059 ORTHO05D004591 1.2e-81 308.1 542 39.3
QL02p062365 Quercus lobata HOM05D004059 ORTHO05D004591 4.5e-81 306.2 536 43.1
CiPaw.03G214200 Carya illinoinensis HOM05D004059 ORTHO05D004591 4.3e-76 289.7 545 38.9
Duzib187G0197 Durio zibethinus HOM05D004059 ORTHO05D004591 1.3e-75 288.1 545 39.6
Ciclev10007937m.g Citrus clementina HOM05D004059 ORTHO05D004591 2.4e-74 283.9 557 39.7
Cfa003070 Carpinus fangiana HOM05D004059 ORTHO05D004591 3.1e-74 283.5 542 38.4
Eucgr.C03476 Eucalyptus grandis HOM05D004059 ORTHO05D004591 6.9e-74 282.3 567 38.1
Haze_25925 Corylus avellana HOM05D004059 ORTHO05D004591 9.0e-74 282.0 548 37.8
Gohir.D07G011700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 9.0e-74 282.0 547 39.9
Cc06_g11520 Coffea canephora HOM05D004059 ORTHO05D004591 2.0e-73 280.8 562 36.8
Potri.006G148800 Populus trichocarpa HOM05D004059 ORTHO05D004591 3.4e-73 280.0 604 35.9
Thecc.09G087400 Theobroma cacao HOM05D004059 ORTHO05D004591 4.5e-73 279.6 549 40.3
PGR102G2684 Punica granatum HOM05D004059 ORTHO05D004591 5.8e-73 279.3 549 38.4
Gorai.001G012400 Gossypium raimondii HOM05D004059 ORTHO05D004591 1.0e-72 278.5 553 39.4
Gohir.A05G030300 Gossypium hirsutum HOM05D004059 ORTHO05D004591 3.8e-72 276.6 545 40.9
Prupe.7G207500 Prunus persica HOM05D004059 ORTHO05D004591 6.5e-72 275.8 572 38.6
Sabra06G0117700 Salix brachista HOM05D004059 ORTHO05D004591 1.4e-71 274.6 592 37.0
BolC9t57704H Brassica oleracea HOM05D004059 ORTHO05D004591 3.2e-71 273.5 383 50.9
Duzib168G0233 Durio zibethinus HOM05D004059 ORTHO05D004591 3.2e-71 273.5 578 37.7
CSS0005796 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 5.5e-71 272.7 536 38.1
Gorai.009G031900 Gossypium raimondii HOM05D004059 ORTHO05D004591 2.7e-70 270.4 545 41.1
Rhsim03G0231600 Rhododendron simsii HOM05D004059 ORTHO05D004591 2.7e-70 270.4 577 38.3
Gohir.D05G031700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 7.9e-70 268.9 545 40.4
MD15G1208900 Malus domestica HOM05D004059 ORTHO05D004591 1.1e-68 265.0 551 37.2
GSVIVG01015189001 Vitis vinifera HOM05D004059 ORTHO05D004591 1.9e-68 264.2 538 36.8
MD02G1081600 Malus domestica HOM05D004059 ORTHO05D004591 4.3e-68 263.1 563 35.9
TWI34G0199 Tripterygium wilfordii HOM05D004059 ORTHO05D004591 5.7e-68 262.7 550 38.5
Manes.03G034700 Manihot esculenta HOM05D004059 ORTHO05D004591 9.6e-68 261.9 551 37.0
CSS0003764 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 1.6e-67 261.2 503 38.0
Manes.16G101000 Manihot esculenta HOM05D004059 ORTHO05D004591 1.6e-67 261.2 554 37.2
Atru.chr7.1612 Acer truncatum HOM05D004059 ORTHO05D004591 4.8e-67 259.6 550 37.8
Actinidia29906 Actinidia chinensis HOM05D004059 ORTHO05D004591 6.9e-66 255.8 489 38.9
THA.LOC104811746 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 1.2e-65 255.0 293 59.0
Nn8g38830 Nelumbo nucifera HOM05D004059 ORTHO05D004591 5.9e-65 252.7 554 36.3
AUR62033947 Chenopodium quinoa HOM05D004059 ORTHO05D004591 1.0e-64 251.9 566 36.2
DCAR_011967 Daucus carota HOM05D004059 ORTHO05D004591 1.3e-64 251.5 522 35.4
Oeu017604.1 Olea europaea HOM05D004059 ORTHO05D004591 2.9e-64 250.4 561 36.0
Medtr2g039620 Medicago truncatula HOM05D004059 ORTHO05D004591 6.5e-64 249.2 533 37.3
FAN19G2456 Fragaria x ananassa HOM05D004059 ORTHO05D004591 8.5e-64 248.8 584 36.8
TPR.G13416 Trifolium pratense HOM05D004059 ORTHO05D004591 5.5e-63 246.1 542 36.5
VMungo1309G0851 Vigna mungo HOM05D004059 ORTHO05D004591 5.5e-63 246.1 523 37.3
AUR62029052 Chenopodium quinoa HOM05D004059 ORTHO05D004591 9.3e-63 245.4 538 37.0
Lj6g0002908 Lotus japonicus HOM05D004059 ORTHO05D004591 9.3e-63 245.4 548 36.9
vmacro06298 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 9.3e-63 245.4 520 36.2
FAN26G3139 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.6e-62 244.6 595 36.3
Phvul.009G231600 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 3.9e-61 240.0 517 36.8
Solyc07g039570.3 Solanum lycopersicum HOM05D004059 ORTHO05D004591 5.1e-61 239.6 542 33.9
HanXRQChr03g0060341 Helianthus annuus HOM05D004059 ORTHO05D004591 6.7e-61 239.2 553 35.4
Aqoxy7G04020 Aquilegia oxysepala HOM05D004059 ORTHO05D004591 8.7e-61 238.8 548 33.0
FAN23G2659 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.1e-60 238.4 589 35.8
FAN28G1400 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.5e-60 237.3 591 36.2
FAN26G1668 Fragaria x ananassa HOM05D004059 ORTHO05D004591 3.3e-60 236.9 610 35.6
Lj4g0028074 Lotus japonicus HOM05D004059 ORTHO05D004591 9.7e-60 235.3 511 36.0
Rhsim05G0018600 Rhododendron simsii HOM05D004059 ORTHO05D004591 9.7e-60 235.3 491 39.3
Nn6g35501 Nelumbo nucifera HOM05D004059 ORTHO05D004591 1.3e-59 235.0 535 34.4
SGA_v2.0_scaffold62G21623 Striga asiatica HOM05D004059 ORTHO05D004591 2.2e-59 234.2 539 34.9
PSO210G1620 Papaver somniferum HOM05D004059 ORTHO05D004591 3.7e-59 233.4 576 34.4
Psat1g140200 Pisum sativum HOM05D004059 ORTHO05D004591 1.1e-58 231.9 532 37.6
PSO210G4563 Papaver somniferum HOM05D004059 ORTHO05D004591 2.4e-58 230.7 576 33.7
Sed0008144 Sechium edule HOM05D004059 ORTHO05D004591 2.4e-58 230.7 550 35.5
Glyma.09G064200 Glycine max HOM05D004059 ORTHO05D004591 3.1e-58 230.3 551 35.2
Migut.J00583 Erythranthe guttata HOM05D004059 ORTHO05D004591 4.1e-58 229.9 539 34.3
SalBow6G2434 Salvia bowleyana HOM05D004059 ORTHO05D004591 4.1e-58 229.9 523 36.9
RcHm_v2.0_Chr2g0093571 Rosa chinensis HOM05D004059 ORTHO05D004591 1.5e-57 228.0 585 35.2
Nitab4.5_0006053g0020 Nicotiana tabacum HOM05D004059 ORTHO05D004591 5.0e-56 223.0 536 33.6
CANSAT56G2242 Cannabis sativa HOM05D004059 ORTHO05D004591 8.5e-56 222.2 657 33.2
Peaxi162Scf00028g00036 Petunia axillaris HOM05D004059 ORTHO05D004591 1.4e-55 221.5 507 33.3
CAN.G52.7 Capsicum annuum HOM05D004059 ORTHO05D004591 2.5e-55 220.7 526 32.9
FvH4_1g07710 Fragaria vesca HOM05D004059 ORTHO05D004591 4.2e-55 219.9 561 35.1
SGA_v2.0_scaffold23G10028 Striga asiatica HOM05D004059 ORTHO05D004591 7.2e-55 219.2 536 34.3
Glyma.15G170500 Glycine max HOM05D004059 ORTHO05D004591 6.1e-54 216.1 526 35.9
Lsat_1_v5_gn_7_36701 Lactuca sativa HOM05D004059 ORTHO05D004591 7.9e-54 215.7 488 36.7
Lj7A677T52 Lonicera japonica HOM05D004059 ORTHO05D004591 1.8e-53 214.5 395 40.3
MBI01_g09949_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 1.8e-53 214.5 497 36.8
arahy.Tifrunner.gnm1.ann1.H4FASW Arachis hypogaea HOM05D004059 ORTHO05D004591 8.8e-53 212.2 486 35.6
Gohir.A07G011900 Gossypium hirsutum HOM05D004059 ORTHO05D004591 1.1e-52 211.8 403 41.4
ClCG03G015470 Citrullus lanatus HOM05D004059 ORTHO05D004591 2.6e-52 210.7 526 35.7
Sopen07g018910 Solanum pennellii HOM05D004059 ORTHO05D004591 2.6e-52 210.7 507 34.1
DCAR_031333 Daucus carota HOM05D004059 ORTHO05D004591 4.8e-51 206.5 504 32.5
COL.COLO4_18190 Corchorus olitorius HOM05D004059 ORTHO05D004591 1.5e-49 201.4 473 39.7
Glyma.17G054000 Glycine max HOM05D004059 ORTHO05D004591 2.0e-49 201.1 548 32.7
ECA240G1274 Erigeron canadensis HOM05D004059 ORTHO05D004591 2.6e-49 200.7 533 32.5
Lj4C294G8 Lonicera japonica HOM05D004059 ORTHO05D004591 7.7e-49 199.1 494 35.0
CsaV3_1G040580 Cucumis sativus L. HOM05D004059 ORTHO05D004591 8.5e-48 195.7 490 32.9
vmacro17254 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 2.7e-46 190.7 454 34.6
Gorai.010G083900 Gossypium raimondii HOM05D004059 ORTHO05D004591 3.0e-45 187.2 470 34.0
CiPaw.04G148500 Carya illinoinensis HOM05D004059 ORTHO05D004591 5.2e-45 186.4 404 38.4
EL10Ac8g19192 Beta vulgaris HOM05D004059 ORTHO05D004591 1.1e-44 185.3 514 32.9
BolC9t57705H Brassica oleracea HOM05D004059 ORTHO05D004591 1.1e-44 185.3 117 76.1
Nitab4.5_0002593g0060 Nicotiana tabacum HOM05D004059 ORTHO05D004591 2.6e-44 184.1 528 30.3
Lalb_Chr11g0074551 Lupinus albus HOM05D004059 ORTHO05D004591 2.2e-43 181.0 392 36.7
Lalb_Chr08g0232291 Lupinus albus HOM05D004059 ORTHO05D004591 2.8e-43 180.6 385 35.8
PGSC0003DMG400022043 Solanum tuberosum HOM05D004059 ORTHO05D004591 2.8e-43 180.6 398 37.2
ATR0749G078 Amborella trichopoda HOM05D004059 ORTHO05D004591 8.2e-43 179.1 516 32.2
Hund25946 Selenicereus undatus HOM05D004059 ORTHO05D004591 1.6e-41 174.9 398 35.9
MELO3C015488.2 Cucumis melo HOM05D004059 ORTHO05D004591 5.9e-41 172.9 470 30.6
VMungo1215G3226 Vigna mungo HOM05D004059 ORTHO05D004591 7.7e-41 172.6 517 31.1
Gohir.D06G071950 Gossypium hirsutum HOM05D004059 ORTHO05D004591 1.1e-39 168.7 484 31.8
Lj4C294T9 Lonicera japonica HOM05D004059 ORTHO05D004591 1.6e-38 164.9 276 41.7
Peaxi162Scf00498g00042 Petunia axillaris HOM05D004059 ORTHO05D004591 1.6e-38 164.9 379 36.4
MELO3C004627.2 Cucumis melo HOM05D004059 ORTHO05D004591 9.7e-36 155.6 494 30.6
Actinidia38451 Actinidia chinensis HOM05D004059 ORTHO05D004591 2.8e-35 154.1 177 54.8
unitig_749.g14229 Utricularia gibba HOM05D004059 ORTHO05D004591 1.1e-34 152.1 500 29.2
MBI04_g36310_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 7.0e-34 149.4 487 30.4
Sc08g0008540 Simmondsia chinensis HOM05D004059 ORTHO05D004591 2.7e-33 147.5 502 31.1
CsaV3_2G001440 Cucumis sativus L. HOM05D004059 ORTHO05D004591 7.7e-33 146.0 505 30.5
arahy.Tifrunner.gnm1.ann1.MX4JUX Arachis hypogaea HOM05D004059 ORTHO05D004591 1.9e-31 141.4 506 29.2
VMungo1215G0279 Vigna mungo HOM05D004059 ORTHO05D004591 4.2e-31 140.2 488 28.1
Phvul.003G135700 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 1.6e-30 138.3 504 28.0
HanXRQChr09g0238101 Helianthus annuus HOM05D004059 ORTHO05D004591 5.2e-29 133.3 359 32.6
CAN.G3656.1 Capsicum annuum HOM05D004059 ORTHO05D004591 3.4e-28 130.6 297 37.0
CAN.G1583.1 Capsicum annuum HOM05D000597 ORTHO05D004591 4.4e-28 130.2 177 47.5
ClCG11G001730 Citrullus lanatus HOM05D004059 ORTHO05D004591 7.5e-28 129.4 468 26.7
arahy.Tifrunner.gnm1.ann1.0BQ45N Arachis hypogaea HOM05D004059 ORTHO05D004591 3.8e-24 117.1 534 26.0
Zm00001eb240050 Zea mays HOM05D004059 ORTHO05D004591 1.9e-23 114.8 518 26.3
PGSC0003DMG400000335 Solanum tuberosum HOM05D000597 ORTHO05D004591 3.2e-23 114.0 271 35.1
Peaxi162Scf00498g00056 Petunia axillaris HOM05D004059 ORTHO05D004591 4.2e-23 113.6 341 33.4
Sed0013460 Sechium edule HOM05D004059 ORTHO05D004591 5.5e-23 113.2 246 38.2
AL290U10010 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 7.2e-23 112.8 74 78.4
HPP92_023889 Vanilla planifolia HOM05D004059 ORTHO05D004591 6.8e-21 106.3 276 33.0
Actinidia38450 Actinidia chinensis HOM05D004059 ORTHO05D004591 2.0e-20 104.8 229 33.6
HPP92_023832 Vanilla planifolia HOM05D004059 ORTHO05D004591 2.6e-20 104.4 276 32.6
Dinv42329 Davidia involucrata HOM05D004059 ORTHO05D004591 5.7e-20 103.2 172 39.5
HPP92_026782 Vanilla planifolia HOM05D004059 ORTHO05D004591 1.3e-19 102.1 463 25.7
TAR383G1057 Trochodendron aralioides HOM05D004059 ORTHO05D004591 6.3e-19 99.8 447 25.7
Peaxi162Scf00498g00054 Petunia axillaris HOM05D004059 ORTHO05D004591 8.3e-19 99.4 270 33.3
CDE04G0617 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 5.4e-18 96.7 319 30.4
Peaxi162Scf00498g00537 Petunia axillaris HOM05D000597 ORTHO05D004591 2.7e-17 94.4 220 37.3
CDE06G2535 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 1.3e-16 92.0 174 35.6
SalBow1G7755 Salvia bowleyana HOM05D004059 ORTHO05D004591 2.9e-16 90.9 302 31.5
Hma1.2p1_0672F.1_g201130 Hydrangea macrophylla HOM05D004059 ORTHO05D004591 6.6e-16 89.7 156 42.9
Zm00001eb385110 Zea mays HOM05D004059 ORTHO05D004591 1.5e-15 88.6 511 25.2
Zm00001eb120960 Zea mays HOM05D004059 ORTHO05D004591 4.3e-15 87.0 197 33.5
Os01g0196300 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 1.6e-14 85.1 70 62.9
Zm00001eb160210 Zea mays HOM05D004059 ORTHO05D004591 1.8e-13 81.6 181 35.9
SalBow1G5126 Salvia bowleyana HOM05D004059 ORTHO05D004591 5.2e-13 80.1 166 36.1
Nitab4.5_0002824g0140 Nicotiana tabacum HOM05D004059 ORTHO05D004591 5.7e-12 76.6 125 40.0
Os01g0195801 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 2.2e-11 74.7 104 44.2
Os01g0575200 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 4.9e-11 73.6 170 35.3
Zm00001eb337860 Zea mays HOM05D004059 ORTHO05D004591 4.9e-11 73.6 150 37.3
Glyma.13G105400 Glycine max HOM05D004059 ORTHO05D004591 1.4e-10 72.0 145 39.3
Peaxi162Scf00221g00512 Petunia axillaris HOM05D004059 ORTHO05D004591 2.4e-10 71.2 299 26.1
Os05g0199800 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 4.1e-10 70.5 62 59.7
unitig_78.g29617 Utricularia gibba HOM05D004059 ORTHO05D004591 5.4e-10 70.1 117 35.0
Zm00001eb347270 Zea mays HOM05D004059 ORTHO05D004591 3.5e-09 67.4 182 35.7
Os06g0570900 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 5.9e-09 66.6 534 25.7
Nitab4.5_0002824g0150 Nicotiana tabacum HOM05D004059 ORTHO05D004591 1.7e-08 65.1 94 44.7
Zm00001eb357120 Zea mays HOM05D004059 ORTHO05D004591 1.7e-08 65.1 155 34.2
Sed0000136 Sechium edule HOM05D004059 ORTHO05D004591 8.6e-08 62.8 109 33.9
Dinv42328 Davidia involucrata HOM05D004059 ORTHO05D004591 1.5e-07 62.0 194 32.5
SEGI_18479 Sequoiadendron giganteum HOM05D001604 ORTHO05D001432 3.3e-07 60.8 116 33.6
TPR.G9117 Trifolium pratense HOM05D001604 ORTHO05D001432 2.1e-06 58.2 74 44.6
Gohir.D11G127600 Gossypium hirsutum HOM05D001604 ORTHO05D001432 2.8e-06 57.8 154 31.2
Gorai.007G136400 Gossypium raimondii HOM05D001604 ORTHO05D001432 2.8e-06 57.8 154 31.2
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 3.6e-06 57.4 233 27.5
arahy.Tifrunner.gnm1.ann1.26781N Arachis hypogaea HOM05D001604 ORTHO05D001432 3.6e-06 57.4 82 42.7
Gohir.A11G122300 Gossypium hirsutum HOM05D001604 ORTHO05D001432 3.6e-06 57.4 95 38.9
Zm00001eb284130 Zea mays HOM05D004059 ORTHO05D004591 4.7e-06 57.0 155 33.5
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 6.2e-06 56.6 70 45.7
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 6.2e-06 56.6 174 28.2
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 6.2e-06 56.6 70 47.1
PGR119G0019 Punica granatum HOM05D001604 ORTHO05D001432 8.0e-06 56.2 62 48.4


User provided reference genes

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