Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 5.1e-252 874.0 464 100.0
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.0e-191 673.7 464 75.2
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 7.2e-190 667.5 464 74.6
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.4e-188 663.3 463 73.9
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 4.4e-187 658.3 462 73.2
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 7.5e-187 657.5 463 73.4
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 2.4e-185 652.5 464 72.0
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 1.6e-184 649.8 465 71.8
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 1.6e-184 649.8 463 71.3
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 2.7e-184 649.0 464 71.6
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 3.8e-183 645.2 464 70.9
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 3.8e-183 645.2 464 70.9
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 5.0e-183 644.8 464 71.8
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 6.6e-183 644.4 463 71.7
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 1.6e-181 639.8 463 71.7
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 1.8e-180 636.3 463 71.5
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 1.8e-164 583.2 466 64.2
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 4.6e-152 542.0 447 62.9
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 1.1e-140 504.2 467 55.7
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 3.4e-139 499.2 464 55.6
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 5.8e-139 498.4 467 53.7
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 4.2e-137 492.3 465 54.0
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 2.7e-136 489.6 467 54.2
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 3.0e-135 486.1 461 55.1
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 6.6e-135 485.0 466 52.8
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 2.5e-134 483.0 468 52.4
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 5.6e-134 481.9 468 52.1
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 7.4e-134 481.5 468 51.9
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 2.8e-133 479.6 365 66.6
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.8e-133 479.6 365 66.6
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 3.6e-133 479.2 464 52.2
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 6.9e-132 474.9 461 52.5
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 9.0e-132 474.6 453 54.1
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 2.0e-131 473.4 463 50.8
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.6e-131 473.0 466 53.2
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 2.6e-131 473.0 466 53.2
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 1.3e-130 470.7 467 52.5
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 1.3e-130 470.7 465 52.5
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 1.3e-130 470.7 465 51.2
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 4.9e-130 468.8 466 52.8
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 6.4e-130 468.4 419 56.8
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 1.4e-129 467.2 465 51.2
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 4.2e-129 465.7 466 51.1
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 5.5e-129 465.3 460 50.9
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 3.5e-128 462.6 468 50.0
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 7.9e-128 461.5 458 50.9
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.0e-127 461.1 458 50.7
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 3.0e-127 459.5 463 50.5
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 3.9e-127 459.1 462 51.1
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 8.7e-127 458.0 465 50.8
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 2.5e-126 456.4 516 47.1
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.3e-126 456.1 460 50.4
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 3.3e-126 456.1 498 47.8
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 2.1e-125 453.4 468 48.9
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.1e-124 449.5 408 53.4
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.3e-124 448.7 408 53.4
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 2.0e-123 446.8 465 48.8
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 3.4e-123 446.0 467 49.0
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 3.4e-123 446.0 460 49.3
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 7.6e-123 444.9 466 49.6
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.0e-122 444.5 464 47.6
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 1.0e-122 444.5 467 48.4
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 2.9e-122 443.0 463 49.0
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 6.5e-122 441.8 459 49.2
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.4e-121 440.7 468 47.6
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.4e-121 440.7 456 48.7
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 1.2e-120 437.6 465 48.6
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 1.6e-120 437.2 460 47.0
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 2.1e-120 436.8 463 47.7
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 2.1e-120 436.8 461 47.7
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 7.9e-120 434.9 417 50.1
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 1.8e-119 433.7 465 48.4
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 2.3e-119 433.3 467 47.3
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 6.7e-119 431.8 469 46.9
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 1.5e-118 430.6 462 48.3
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.9e-118 430.3 466 48.9
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 1.9e-118 430.3 465 48.2
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 4.3e-118 429.1 469 47.5
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 2.8e-117 426.4 465 47.5
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 3.7e-117 426.0 458 47.6
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 3.7e-117 426.0 458 46.9
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 8.2e-117 424.9 456 46.1
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 1.4e-116 424.1 467 47.1
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 3.1e-116 422.9 469 47.3
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 5.3e-116 422.2 455 46.4
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 6.9e-116 421.8 468 46.2
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.2e-115 421.0 463 47.1
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 3.4e-115 419.5 468 45.9
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 2.9e-114 416.4 461 45.8
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.2e-112 411.0 409 50.9
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 2.1e-112 410.2 457 46.2
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 2.7e-112 409.8 461 47.1
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.0e-111 407.9 465 45.8
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.3e-111 407.5 465 45.6
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 1.8e-111 407.1 407 49.1
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.9e-110 403.7 460 45.4
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 4.3e-110 402.5 463 46.9
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 4.8e-109 399.1 439 46.0
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 1.0e-106 391.3 467 44.5
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 8.5e-106 388.3 406 47.0
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.1e-105 387.9 408 50.2
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 5.5e-97 359.0 418 45.5
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 2.7e-96 356.7 461 42.7
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 2.2e-93 347.1 414 42.5
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.1e-92 344.7 458 42.1
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 1.4e-92 344.4 370 49.7
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 6.5e-82 308.9 404 39.6
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 1.2e-80 304.7 418 37.3
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 2.2e-77 293.9 281 50.5
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 8.3e-77 292.0 293 48.5
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 7.5e-70 268.9 372 41.7
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 7.5e-70 268.9 440 35.7
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 7.5e-62 242.3 406 37.2
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 1.6e-56 224.6 323 40.2
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.8e-55 221.1 127 86.6
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.8e-55 221.1 127 86.6
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 4.0e-55 219.9 349 41.5
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.2e-54 218.4 447 30.4
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 7.5e-54 215.7 124 86.3
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 2.3e-50 204.1 522 29.3
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 1.6e-43 181.4 361 29.9
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 3.0e-42 177.2 194 48.5
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 1.7e-37 161.4 161 44.1
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 6.4e-37 159.5 161 43.5
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 8.1e-32 142.5 95 69.5
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 3.1e-31 140.6 128 53.1
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.2e-30 138.7 154 46.1
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 1.4e-28 131.7 108 56.5
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 5.4e-28 129.8 401 26.9
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 9.3e-28 129.0 326 24.8
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 3.9e-26 123.6 224 37.1
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 9.6e-25 119.0 294 26.5
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 3.1e-15 87.4 120 35.0
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 7.6e-14 82.8 173 31.8
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 8.4e-13 79.3 69 62.3
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 3.5e-11 73.9 88 36.4
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 6.0e-11 73.2 88 36.4
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 1.3e-10 72.0 73 43.8


User provided reference genes

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