Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 2.6e-242 842.0 568 100.0
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 1.4e-158 563.9 503 86.9
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 1.2e-154 550.8 504 83.7
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 1.9e-152 543.5 503 84.3
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 1.4e-147 527.3 504 74.0
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 4.6e-146 522.3 507 84.0
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 7.8e-146 521.5 506 83.6
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 3.9e-145 519.2 507 83.0
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 8.7e-145 518.1 508 82.9
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 1.5e-144 517.3 506 83.2
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 9.6e-144 514.6 503 82.9
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 1.2e-141 507.7 508 82.1
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 6.3e-119 432.2 512 72.3
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 7.2e-107 392.1 467 72.2
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 6.7e-105 385.6 493 67.3
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.1e-104 384.8 501 68.5
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.5e-104 384.4 467 71.7
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 2.0e-104 384.0 507 67.3
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.0e-104 384.0 507 67.3
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 4.4e-104 382.9 517 67.9
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 8.2e-103 378.6 462 69.7
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.1e-102 378.3 501 68.3
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.5e-101 374.4 457 71.1
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 2.6e-101 373.6 509 66.8
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 1.3e-100 371.3 354 91.5
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 3.6e-98 363.2 509 64.8
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 2.6e-93 347.1 475 67.8
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 3.5e-93 346.7 514 63.4
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 6.5e-92 342.4 479 65.1
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 1.5e-91 341.3 479 65.3
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 4.2e-91 339.7 479 64.7
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 5.2e-89 332.8 502 64.9
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 2.6e-88 330.5 473 64.3
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 2.6e-88 330.5 456 67.5
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 5.7e-88 329.3 472 65.9
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 6.3e-87 325.9 456 65.6
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 1.1e-86 325.1 486 65.4
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 1.8e-86 324.3 494 66.2
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 3.1e-86 323.6 458 67.0
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 7.0e-86 322.4 498 63.3
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 5.9e-85 319.3 470 66.0
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 7.7e-85 318.9 514 63.4
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 6.5e-84 315.8 477 65.6
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 1.5e-83 314.7 458 62.0
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 2.1e-82 310.8 482 59.8
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 2.7e-82 310.5 497 57.9
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 3.6e-82 310.1 506 59.7
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 8.0e-82 308.9 511 60.1
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 1.4e-81 308.1 472 63.8
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 1.4e-81 308.1 495 62.2
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 2.3e-81 307.4 457 63.5
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 3.0e-81 307.0 495 61.4
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 4.0e-81 306.6 458 63.1
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 1.2e-80 305.1 501 60.1
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 2.6e-80 303.9 452 66.4
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 2.6e-80 303.9 487 62.6
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 5.7e-80 302.8 495 61.0
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 2.2e-79 300.8 498 62.0
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 2.8e-79 300.4 482 62.0
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 2.4e-78 297.4 450 66.0
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 5.4e-78 296.2 378 72.2
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 4.5e-77 293.1 498 59.6
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 4.5e-77 293.1 496 61.1
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 5.9e-77 292.7 457 60.8
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 1.3e-76 291.6 336 75.0
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 2.9e-76 290.4 409 68.2
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.5e-75 288.1 467 61.9
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 2.5e-75 287.3 470 63.0
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 4.2e-75 286.6 518 56.8
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 7.2e-75 285.8 467 61.9
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 1.2e-74 285.0 462 62.8
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 2.8e-74 283.9 482 60.4
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 3.6e-74 283.5 466 65.0
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 2.3e-73 280.8 468 63.9
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 3.0e-73 280.4 409 70.9
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 6.8e-73 279.3 483 61.5
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 4.4e-72 276.6 460 63.9
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 5.4e-70 269.6 482 57.9
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 5.4e-70 269.6 458 61.1
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 1.6e-69 268.1 472 57.6
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 1.0e-68 265.4 333 62.2
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 2.3e-68 264.2 488 55.5
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 1.1e-67 261.9 360 70.8
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 1.5e-67 261.5 477 59.5
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 3.6e-66 256.9 490 55.3
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.0e-65 255.4 455 58.2
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 6.8e-65 252.7 474 54.4
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 6.8e-65 252.7 402 60.4
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 7.5e-64 249.2 483 57.8
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 1.1e-62 245.4 288 82.6
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 7.8e-61 239.2 455 59.6
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 5.0e-60 236.5 468 57.3
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 1.5e-59 235.0 478 58.2
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 1.5e-59 235.0 473 55.4
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 3.6e-58 230.3 273 50.5
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 5.8e-56 223.0 392 57.4
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.4e-54 218.4 354 67.8
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 3.5e-53 213.8 470 56.2
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 1.7e-52 211.5 288 80.6
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.7e-47 194.9 436 53.7
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 2.3e-44 184.5 159 67.9
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 7.3e-43 179.5 234 80.3
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 1.6e-42 178.3 299 53.5
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 6.2e-42 176.4 288 71.9
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 2.6e-40 171.0 285 74.4
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.9e-38 164.9 464 29.7
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 1.9e-38 164.9 470 50.9
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 1.5e-35 155.2 498 48.0
BcaNung06726 Brassica carinata HOM05D006454 ORTHO05D008024 3.1e-33 147.5 177 59.9
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 1.2e-32 145.6 115 80.0
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 8.7e-28 129.4 96 64.6
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 5.3e-25 120.2 105 75.2
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 4.8e-18 97.1 111 50.5
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 5.3e-17 93.6 321 51.4
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.5e-16 92.0 284 29.6
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 4.5e-16 90.5 332 49.1
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 6.5e-15 86.7 319 52.4
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 3.5e-13 80.9 313 49.5
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 2.6e-08 64.7 322 23.6
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 5.0e-07 60.5 120 44.2
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 8.4e-07 59.7 118 29.7


User provided reference genes

Program Settings