Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 9.3e-311 1069.3 523 100.0
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.1e-258 896.3 535 82.2
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.2e-257 892.9 533 82.2
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 2.2e-256 888.6 545 80.6
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 1.5e-252 875.9 537 80.3
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 7.5e-252 873.6 541 79.7
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.1e-250 869.8 541 80.0
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 4.1e-250 867.8 534 80.7
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 9.5e-247 856.7 533 80.3
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 2.2e-243 845.5 535 79.1
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 5.9e-241 837.4 535 78.5
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 7.0e-234 813.9 528 78.4
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 4.1e-226 788.1 526 72.6
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 1.3e-190 670.2 525 63.4
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 2.1e-190 669.5 532 62.6
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 2.8e-190 669.1 532 63.3
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 6.2e-190 667.9 530 63.0
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 8.2e-190 667.5 531 61.2
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 4.0e-189 665.2 533 63.6
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.5e-188 663.3 527 62.8
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.5e-188 663.3 536 62.7
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 2.0e-188 662.9 526 63.5
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 2.6e-188 662.5 527 63.6
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.4e-188 662.1 527 62.8
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 5.8e-188 661.4 538 61.0
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 7.6e-188 661.0 524 64.5
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-187 660.2 524 61.8
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.7e-187 659.8 525 62.3
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 2.2e-187 659.4 537 63.1
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 2.9e-187 659.1 534 61.6
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 2.9e-187 659.1 533 62.5
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 2.9e-187 659.1 530 62.3
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 3.8e-187 658.7 524 62.0
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 8.4e-187 657.5 531 61.8
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.2e-186 655.2 522 63.2
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.2e-186 655.2 522 63.2
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 2.7e-185 652.5 525 63.8
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 2.7e-185 652.5 526 61.8
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 4.6e-185 651.7 520 60.4
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 4.6e-185 651.7 533 62.3
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 6.0e-185 651.4 530 62.5
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 1.0e-184 650.6 531 62.3
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.0e-184 649.0 522 63.0
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.0e-184 649.0 522 63.0
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.9e-184 648.7 523 62.3
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 3.9e-184 648.7 530 61.5
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.1e-184 648.3 533 60.4
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 6.7e-184 647.9 549 59.9
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 8.7e-184 647.5 550 60.2
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 8.7e-184 647.5 550 60.2
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.9e-183 646.4 547 61.1
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.9e-183 646.4 539 61.0
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 7.4e-183 644.4 534 61.8
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 7.4e-183 644.4 529 59.9
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 3.7e-182 642.1 541 60.1
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 4.8e-182 641.7 547 60.3
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 6.3e-182 641.3 547 59.8
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.1e-181 640.6 536 59.7
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.1e-181 640.6 555 60.0
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.4e-181 640.2 532 60.7
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.8e-181 639.8 541 59.1
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 2.4e-181 639.4 523 62.1
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 2.4e-181 639.4 555 59.8
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 4.1e-181 638.6 527 60.7
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.3e-181 638.3 526 62.2
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 5.3e-181 638.3 526 60.1
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.0e-180 636.3 536 62.1
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.4e-180 635.6 526 61.8
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 4.5e-180 635.2 504 61.1
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.3e-179 633.6 538 59.1
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.7e-179 633.3 528 60.6
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 5.0e-179 631.7 529 61.2
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.4e-178 630.2 527 61.1
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.4e-178 630.2 523 59.1
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.9e-178 629.8 525 61.0
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.5e-178 629.4 537 60.0
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 3.2e-178 629.0 533 60.8
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 7.2e-178 627.9 533 60.6
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 1.6e-177 626.7 550 57.8
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 7.9e-177 624.4 435 73.1
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.9e-175 619.8 532 58.6
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.9e-175 619.8 525 57.3
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 2.5e-175 619.4 559 57.4
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 4.3e-175 618.6 530 60.0
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.7e-174 616.7 527 58.1
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 4.8e-174 615.1 524 59.0
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 6.3e-174 614.8 540 57.8
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 8.2e-174 614.4 550 57.8
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 2.4e-173 612.8 520 60.2
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.5e-172 610.1 534 59.0
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 2.9e-171 605.9 518 59.5
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.8e-171 605.5 548 57.3
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.5e-170 602.8 526 59.3
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 9.4e-170 600.9 520 58.8
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.8e-168 596.7 548 56.9
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.5e-167 593.6 548 56.2
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 2.6e-167 592.8 523 56.4
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 9.1e-165 584.3 521 55.9
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.6e-164 582.8 523 56.4
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.0e-163 580.9 501 55.7
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.6e-161 573.5 469 61.4
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.6e-161 572.4 477 58.7
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.5e-159 567.0 489 57.7
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 2.8e-158 562.8 416 66.6
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 4.8e-158 562.0 538 54.1
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 6.3e-158 561.6 529 56.7
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.8e-157 560.1 482 59.8
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 7.7e-156 554.7 473 57.9
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 3.3e-151 539.3 406 66.0
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 2.9e-147 526.2 447 56.8
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 1.2e-145 520.8 452 60.0
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 4.5e-140 502.3 522 51.7
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.8e-137 493.0 396 61.9
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.2e-129 467.6 295 75.9
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 8.0e-129 464.9 540 53.5
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 8.9e-128 461.5 315 70.5
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.3e-126 457.6 315 68.9
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 1.7e-123 447.2 307 69.4
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.1e-122 444.5 315 66.0
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 6.6e-115 418.7 522 42.3
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 5.6e-114 415.6 529 40.5
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.8e-112 410.6 287 66.6
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 1.4e-109 401.0 580 38.4
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 3.2e-109 399.8 396 53.0
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 3.8e-102 376.3 350 59.4
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 4.9e-94 349.4 250 69.6
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 4.2e-93 346.3 245 69.8
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 2.8e-89 333.6 242 67.4
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 1.4e-88 331.3 274 63.9
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 7.4e-82 308.9 325 49.8
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 6.0e-76 289.3 260 60.0
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.8e-75 287.7 202 66.3
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.8e-75 287.7 221 62.4
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-75 287.3 260 59.6
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 1.9e-74 284.3 203 67.5
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 3.8e-62 243.4 161 78.9
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 2.0e-58 231.1 170 68.8
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 5.0e-54 216.5 134 72.4
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 5.0e-54 216.5 134 72.4
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 9.4e-53 212.2 124 76.6
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-51 207.6 482 29.0
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 5.3e-48 196.4 230 47.4
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.1e-42 178.7 190 47.9
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 4.8e-41 173.3 106 72.6
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.8e-40 171.4 296 37.2
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.2e-36 158.7 101 76.2
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 4.7e-36 156.8 273 35.5
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 8.8e-35 152.5 180 45.6
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.5e-34 151.8 167 46.7
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 2.0e-31 141.4 76 81.6
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 2.0e-31 141.4 76 81.6
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 1.3e-30 138.7 168 45.2
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 5.0e-30 136.7 174 41.4
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 5.0e-30 136.7 85 72.9
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 8.5e-30 136.0 276 33.3
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.5e-29 135.2 183 45.4
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 8.0e-28 129.4 101 63.4
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 8.0e-28 129.4 98 63.3
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 9.8e-26 122.5 72 84.7
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 7.2e-21 106.3 96 55.2
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 9.8e-18 95.9 85 55.3
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 4.7e-12 77.0 99 38.4
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.9e-09 67.8 215 28.8
C09p46170 Brassica napus HOM05D004336 ORTHO05D040132 4.9e-09 67.0 51 58.8
BolC9t57482H Brassica oleracea HOM05D004336 ORTHO05D040132 4.9e-09 67.0 51 58.8
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 5.4e-08 63.5 34 91.2
Eucgr.F00781 Eucalyptus grandis HOM05D004336 ORTHO05D192954 7.0e-08 63.2 47 63.8


User provided reference genes

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