Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G11350 Aethionema arabicum HOM05D000701 ORTHO05D030976 6.4e-25 116.7 62 100.0
Aa31LG3G11360 Aethionema arabicum HOM05D000701 ORTHO05D000531 5.2e-11 70.5 63 61.9
AL8G30920 Arabidopsis lyrata HOM05D000701 ORTHO05D000531 6.8e-11 70.1 51 74.5
Thhalv10014033m.g Eutrema salsugineum HOM05D000701 ORTHO05D000531 8.9e-11 69.7 51 70.6
Aa31LG3G11280 Aethionema arabicum HOM05D000701 ORTHO05D000531 1.5e-10 68.9 51 70.6
Sp6g17280 Schrenkiella parvula HOM05D000701 ORTHO05D000531 1.5e-10 68.9 51 68.6
CARHR268700 Cardamine hirsuta HOM05D000701 ORTHO05D000531 2.6e-10 68.2 50 72.0
Carub.0008s1568 Capsella rubella HOM05D000701 ORTHO05D000531 4.4e-10 67.4 52 69.2
Aa31LG2G16600 Aethionema arabicum HOM05D000701 ORTHO05D000531 5.8e-10 67.0 51 66.7
Aa31LG2G16790 Aethionema arabicum HOM05D000701 ORTHO05D000531 5.8e-10 67.0 51 66.7
Aa31LG3G11300 Aethionema arabicum HOM05D000701 ORTHO05D000531 5.8e-10 67.0 51 68.6
Aa31sc2051G10 Aethionema arabicum HOM05D000701 ORTHO05D000531 5.8e-10 67.0 52 67.3
A10p12690 Brassica napus HOM05D000701 ORTHO05D000531 5.8e-10 67.0 51 68.6
BraA10t43351Z Brassica rapa HOM05D000701 ORTHO05D000531 5.8e-10 67.0 51 68.6
BraA10t43353Z Brassica rapa HOM05D000701 ORTHO05D000531 5.8e-10 67.0 51 68.6
Carub.0008s1567 Capsella rubella HOM05D000701 ORTHO05D000531 5.8e-10 67.0 51 74.5
Thhalv10015854m.g Eutrema salsugineum HOM05D000701 ORTHO05D000531 5.8e-10 67.0 51 68.6
Aa31LG3G11310 Aethionema arabicum HOM05D000701 ORTHO05D000531 7.5e-10 66.6 51 64.7
AT5G55360 Arabidopsis thaliana HOM05D000701 ORTHO05D000531 7.5e-10 66.6 51 66.7
AT5G55350 Arabidopsis thaliana HOM05D000701 ORTHO05D000531 9.8e-10 66.2 51 70.6
AL8G30900 Arabidopsis lyrata HOM05D000701 ORTHO05D000531 1.3e-09 65.9 51 70.6
BcaB05g22204 Brassica carinata HOM05D000701 ORTHO05D000531 1.3e-09 65.9 52 65.4
BcaC03g14241 Brassica carinata HOM05D000701 ORTHO05D000531 1.3e-09 65.9 51 66.7
C02p16190 Brassica napus HOM05D000701 ORTHO05D000531 1.3e-09 65.9 51 66.7
CARHR268710 Cardamine hirsuta HOM05D000701 ORTHO05D000531 1.3e-09 65.9 51 62.7
CARHR264140 Cardamine hirsuta HOM05D000701 ORTHO05D000531 1.7e-09 65.5 51 68.6
BcaC04g20240 Brassica carinata HOM05D000701 ORTHO05D000531 2.2e-09 65.1 51 66.7
BolC9t57471H Brassica oleracea HOM05D000701 ORTHO05D000531 2.2e-09 65.1 51 66.7
AL8G30890 Arabidopsis lyrata HOM05D000701 ORTHO05D000531 2.9e-09 64.7 51 70.6
AT5G55370 Arabidopsis thaliana HOM05D000701 ORTHO05D000531 2.9e-09 64.7 52 65.4
BcaC04g20241 Brassica carinata HOM05D000701 ORTHO05D000531 2.9e-09 64.7 51 66.7
C09p46000 Brassica napus HOM05D000701 ORTHO05D000531 2.9e-09 64.7 51 66.7
BolC9t57470H Brassica oleracea HOM05D000701 ORTHO05D000531 2.9e-09 64.7 51 66.7
CARHR268690 Cardamine hirsuta HOM05D000701 ORTHO05D000531 2.9e-09 64.7 51 66.7
AT5G55340 Arabidopsis thaliana HOM05D000701 ORTHO05D000531 4.9e-09 63.9 51 72.5
BcaB05g22205 Brassica carinata HOM05D000701 ORTHO05D000531 4.9e-09 63.9 51 62.7
BcaB08g35894 Brassica carinata HOM05D000701 ORTHO05D000531 4.9e-09 63.9 53 62.3
Aa31LG3G11290 Aethionema arabicum HOM05D000701 ORTHO05D000531 6.4e-09 63.5 51 62.7
AT1G34500 Arabidopsis thaliana HOM05D000701 ORTHO05D000531 6.4e-09 63.5 51 62.7
BolC3t14074H Brassica oleracea HOM05D000701 ORTHO05D000531 6.4e-09 63.5 60 58.3
Carub.0008s1571 Capsella rubella HOM05D000701 ORTHO05D000531 6.4e-09 63.5 51 66.7
AL1G49040 Arabidopsis lyrata HOM05D000701 ORTHO05D000531 8.3e-09 63.2 51 64.7
BcaB08g35898 Brassica carinata HOM05D000701 ORTHO05D000531 8.3e-09 63.2 51 62.7
A03p14100 Brassica napus HOM05D000701 ORTHO05D000531 8.3e-09 63.2 51 62.7
Thhalv10015572m.g Eutrema salsugineum HOM05D000701 ORTHO05D000531 8.3e-09 63.2 52 67.3
BcaC04g20238 Brassica carinata HOM05D000701 ORTHO05D000531 1.1e-08 62.8 51 64.7
C09p46030 Brassica napus HOM05D000701 ORTHO05D000531 1.1e-08 62.8 51 64.7
BolC2t07722H Brassica oleracea HOM05D000701 ORTHO05D000531 1.1e-08 62.8 51 62.7
BolC9t57472H Brassica oleracea HOM05D000701 ORTHO05D000531 1.1e-08 62.8 51 64.7
BraA02t06034Z Brassica rapa HOM05D000701 ORTHO05D000531 1.1e-08 62.8 51 62.7
BcaB08g35893 Brassica carinata HOM05D000701 ORTHO05D000531 1.4e-08 62.4 51 62.7
A10p12680 Brassica napus HOM05D000701 ORTHO05D000531 1.4e-08 62.4 51 64.7
BraA10t43354Z Brassica rapa HOM05D000701 ORTHO05D000531 1.4e-08 62.4 51 64.7
AL8G30930 Arabidopsis lyrata HOM05D000701 ORTHO05D000531 1.9e-08 62.0 51 56.9
AT5G55330 Arabidopsis thaliana HOM05D000701 ORTHO05D000531 1.9e-08 62.0 51 62.7
BcaC04g20248 Brassica carinata HOM05D000701 ORTHO05D000531 1.9e-08 62.0 51 66.7
A03p14930 Brassica napus HOM05D000701 ORTHO05D030976 1.9e-08 62.0 51 60.8
C09p45660 Brassica napus HOM05D000701 ORTHO05D000531 1.9e-08 62.0 51 66.7
BolC3t14155H Brassica oleracea HOM05D000701 ORTHO05D030976 1.9e-08 62.0 51 60.8
BolC9t57460H Brassica oleracea HOM05D000701 ORTHO05D000531 1.9e-08 62.0 51 66.7
BraA03t10710Z Brassica rapa HOM05D000701 ORTHO05D000531 1.9e-08 62.0 51 60.8
BcaC01g06356 Brassica carinata HOM05D000701 ORTHO05D000531 2.4e-08 61.6 60 56.7
BcaC01g06362 Brassica carinata HOM05D000701 ORTHO05D000531 2.4e-08 61.6 60 56.7
A03p14110 Brassica napus HOM05D000701 ORTHO05D000531 2.4e-08 61.6 60 56.7
A03p14120 Brassica napus HOM05D000701 ORTHO05D000531 2.4e-08 61.6 51 58.8
A10p12700 Brassica napus HOM05D000701 ORTHO05D000531 2.4e-08 61.6 51 64.7
C02p16170 Brassica napus HOM05D000701 ORTHO05D000531 2.4e-08 61.6 51 58.8
BraA03t10711Z Brassica rapa HOM05D000701 ORTHO05D000531 2.4e-08 61.6 60 56.7
BraA03t10712Z Brassica rapa HOM05D000701 ORTHO05D000531 2.4e-08 61.6 51 58.8
CARHR268720 Cardamine hirsuta HOM05D000701 ORTHO05D000531 2.4e-08 61.6 56 57.1
TWI39G1250 Tripterygium wilfordii HOM05D000701 ORTHO05D000531 2.4e-08 61.6 56 55.4
Aa31LG3G11370 Aethionema arabicum HOM05D000701 ORTHO05D000531 4.1e-08 60.8 58 60.3
BolC3t14073H Brassica oleracea HOM05D000701 ORTHO05D000531 4.1e-08 60.8 42 66.7
Carub.0008s1570 Capsella rubella HOM05D000701 ORTHO05D000531 4.1e-08 60.8 52 57.7
Sp6g17290 Schrenkiella parvula HOM05D000701 ORTHO05D000531 4.1e-08 60.8 51 60.8
TWI38G1644 Tripterygium wilfordii HOM05D000701 ORTHO05D000531 4.1e-08 60.8 56 55.4
Aa31LG3G11380 Aethionema arabicum HOM05D000701 ORTHO05D000531 5.4e-08 60.5 51 60.8
AT1G34520 Arabidopsis thaliana HOM05D000701 ORTHO05D000531 5.4e-08 60.5 51 62.7
AT5G55380 Arabidopsis thaliana HOM05D000701 ORTHO05D000531 7.1e-08 60.1 62 51.6
BcaB08g35897 Brassica carinata HOM05D000701 ORTHO05D000531 7.1e-08 60.1 51 60.8
Carub.0008s1572 Capsella rubella HOM05D000701 ORTHO05D000531 7.1e-08 60.1 63 49.2
Thhalv10015807m.g Eutrema salsugineum HOM05D000701 ORTHO05D000531 7.1e-08 60.1 51 60.8
C02p16180 Brassica napus HOM05D000701 ORTHO05D000531 9.2e-08 59.7 51 58.8
Sp6g17270 Schrenkiella parvula HOM05D000701 ORTHO05D000531 9.2e-08 59.7 51 62.7
AT5G51420 Arabidopsis thaliana HOM05D000701 ORTHO05D000531 1.2e-07 59.3 51 66.7
BcaC01g06357 Brassica carinata HOM05D000701 ORTHO05D000531 1.2e-07 59.3 42 66.7
Thhalv10015320m.g Eutrema salsugineum HOM05D000701 ORTHO05D000531 1.6e-07 58.9 63 54.0
AT1G34490 Arabidopsis thaliana HOM05D000701 ORTHO05D000531 2.1e-07 58.5 51 60.8
Sp6g17260 Schrenkiella parvula HOM05D000701 ORTHO05D000531 2.1e-07 58.5 51 64.7
Sp6g17300 Schrenkiella parvula HOM05D000701 ORTHO05D000531 2.1e-07 58.5 51 56.9
TWI38G0820 Tripterygium wilfordii HOM05D000701 ORTHO05D000531 2.1e-07 58.5 56 51.8
BcaB05g22202 Brassica carinata HOM05D000701 ORTHO05D000531 6.0e-07 57.0 52 57.7
CARHR268680 Cardamine hirsuta HOM05D000701 ORTHO05D000531 6.0e-07 57.0 51 66.7
Thecc.07G025300 Theobroma cacao HOM05D000701 ORTHO05D000531 7.8e-07 56.6 49 53.1
BcaB05g22206 Brassica carinata HOM05D000701 ORTHO05D000531 1.0e-06 56.2 62 53.2
BcaC03g14243 Brassica carinata HOM05D000701 ORTHO05D000531 1.0e-06 56.2 52 57.7
A10p12580 Brassica napus HOM05D000701 ORTHO05D000531 1.0e-06 56.2 51 60.8
Manes.03G134706 Manihot esculenta HOM05D000701 ORTHO05D000531 1.0e-06 56.2 56 53.6
Manes.03G134804 Manihot esculenta HOM05D000701 ORTHO05D000531 1.0e-06 56.2 56 53.6
Sp7g21710 Schrenkiella parvula HOM05D000701 ORTHO05D000531 1.0e-06 56.2 51 52.9
TPR.G23576 Trifolium pratense HOM05D000701 ORTHO05D000531 1.0e-06 56.2 56 50.0
AL8G30880 Arabidopsis lyrata HOM05D000701 ORTHO05D000531 1.3e-06 55.8 71 42.3
BcaB01g04345 Brassica carinata HOM05D000701 ORTHO05D000531 1.3e-06 55.8 63 50.8
A02p09720 Brassica napus HOM05D000701 ORTHO05D000531 1.3e-06 55.8 45 60.0
A03p14140 Brassica napus HOM05D000701 ORTHO05D000531 1.3e-06 55.8 51 60.8
BraA02t06037Z Brassica rapa HOM05D000701 ORTHO05D000531 1.3e-06 55.8 45 60.0
BraA03t10714Z Brassica rapa HOM05D000701 ORTHO05D000531 1.3e-06 55.8 51 60.8
Carub.0008s1197 Capsella rubella HOM05D000701 ORTHO05D000531 1.3e-06 55.8 51 60.8
Carub.0008s1566 Capsella rubella HOM05D000701 ORTHO05D000531 1.3e-06 55.8 71 47.9
Manes.03G134704 Manihot esculenta HOM05D000701 ORTHO05D000531 1.3e-06 55.8 49 53.1
Manes.03G134802 Manihot esculenta HOM05D000701 ORTHO05D000531 1.3e-06 55.8 49 53.1
BolC2t07726H Brassica oleracea HOM05D000701 ORTHO05D000531 1.7e-06 55.5 52 55.8
CiPaw.12G134600 Carya illinoinensis HOM05D000701 ORTHO05D000531 1.7e-06 55.5 52 51.9
VMungo0647G2064 Vigna mungo HOM05D000701 ORTHO05D000531 1.7e-06 55.5 52 51.9
Glyma.08G323400 Glycine max HOM05D000701 ORTHO05D000531 2.3e-06 55.1 49 49.0
Carub.0008s1195 Capsella rubella HOM05D000701 ORTHO05D000531 3.0e-06 54.7 51 60.8
A03p14090 Brassica napus HOM05D000701 ORTHO05D000531 3.9e-06 54.3 58 55.2
C03p16530 Brassica napus HOM05D000701 ORTHO05D000531 3.9e-06 54.3 58 55.2
BraA03t10709Z Brassica rapa HOM05D000701 ORTHO05D000531 3.9e-06 54.3 58 55.2
Gohir.A04G010700 Gossypium hirsutum HOM05D000701 ORTHO05D000531 3.9e-06 54.3 58 46.6
Prupe.4G227200 Prunus persica HOM05D000701 ORTHO05D000531 3.9e-06 54.3 57 50.9
BcaNung03193 Brassica carinata HOM05D000701 ORTHO05D000531 5.1e-06 53.9 52 53.8
C07p53090 Brassica napus HOM05D000701 ORTHO05D000531 5.1e-06 53.9 52 53.8
DCAR_017101 Daucus carota HOM05D000701 ORTHO05D000531 5.1e-06 53.9 55 47.3
Thhalv10013992m.g Eutrema salsugineum HOM05D000701 ORTHO05D000531 5.1e-06 53.9 51 54.9
MBI16_g31723_MAGBIO Magnolia biondii HOM05D000701 ORTHO05D000531 5.1e-06 53.9 49 53.1
QL02p033861 Quercus lobata HOM05D000701 ORTHO05D000531 5.1e-06 53.9 50 52.0
Sp6g08930 Schrenkiella parvula HOM05D000701 ORTHO05D000531 5.1e-06 53.9 51 52.9
Atru.chr2.3580 Acer truncatum HOM05D000701 ORTHO05D000531 6.6e-06 53.5 52 53.8
BolC3t14072H Brassica oleracea HOM05D000701 ORTHO05D000531 6.6e-06 53.5 58 55.2
CANSAT11G1543 Cannabis sativa HOM05D000701 ORTHO05D000531 6.6e-06 53.5 53 49.1
Duzib213G0556 Durio zibethinus HOM05D000701 ORTHO05D000531 6.6e-06 53.5 56 50.0
FvH4_2g09840 Fragaria vesca HOM05D000701 ORTHO05D000531 6.6e-06 53.5 54 48.1
Lsat_1_v5_gn_5_2901 Lactuca sativa HOM05D000701 ORTHO05D000531 6.6e-06 53.5 47 55.3
QL08p008124 Quercus lobata HOM05D000701 ORTHO05D000531 6.6e-06 53.5 57 49.1
Rhsim06G0224700 Rhododendron simsii HOM05D000701 ORTHO05D000531 6.6e-06 53.5 53 47.2
RcHm_v2.0_Chr2g0123131 Rosa chinensis HOM05D000701 ORTHO05D000531 6.6e-06 53.5 57 49.1
Prupe.4G227400 Prunus persica HOM05D000701 ORTHO05D000531 8.6e-06 53.1 56 48.2
TAR627G0513 Trochodendron aralioides HOM05D000701 ORTHO05D000531 8.6e-06 53.1 56 46.4


User provided reference genes

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