Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 9.5e-56 219.9 111 100.0
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 1.2e-47 193.0 111 90.1
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 4.7e-47 191.0 111 90.1
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 4.7e-47 191.0 111 90.1
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 1.4e-46 189.5 111 89.2
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 1.4e-46 189.5 111 88.3
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 2.4e-46 188.7 111 87.4
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 3.1e-46 188.3 111 86.5
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 4.0e-46 188.0 111 88.3
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 4.0e-46 188.0 111 88.3
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 4.0e-46 188.0 111 87.4
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 9.0e-46 186.8 111 86.5
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-45 186.4 111 86.5
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-45 186.4 112 89.3
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-45 186.4 112 89.3
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-45 186.4 112 89.3
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.5e-45 186.0 111 89.2
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 1.5e-45 186.0 111 89.2
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 1.5e-45 186.0 111 86.5
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 4.9e-44 181.0 111 79.3
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.9e-40 169.1 98 83.7
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 9.0e-38 160.2 111 68.5
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 2.6e-37 158.7 98 76.5
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 4.5e-37 157.9 107 71.0
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 1.3e-36 156.4 107 70.1
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 1.7e-36 156.0 107 68.2
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 1.7e-36 156.0 106 71.7
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 2.9e-36 155.2 107 69.2
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 3.8e-36 154.8 107 69.2
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 6.4e-36 154.1 107 69.2
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 6.4e-36 154.1 108 68.5
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 8.4e-36 153.7 108 71.3
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 8.4e-36 153.7 107 68.2
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.1e-35 153.3 111 65.8
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 1.4e-35 152.9 107 67.3
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.4e-35 152.9 100 74.0
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.4e-35 152.9 108 70.4
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.4e-35 152.9 109 67.9
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 1.9e-35 152.5 107 71.0
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 1.9e-35 152.5 107 66.4
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 2.4e-35 152.1 81 91.4
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.4e-35 152.1 107 67.3
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 2.4e-35 152.1 107 67.3
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.4e-35 152.1 100 74.0
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.4e-35 152.1 106 67.9
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.4e-35 152.1 106 67.9
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 3.2e-35 151.8 108 65.7
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 3.2e-35 151.8 108 66.7
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.2e-35 151.8 106 67.9
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 3.2e-35 151.8 107 68.2
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 3.2e-35 151.8 107 66.4
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 4.2e-35 151.4 107 65.4
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 4.2e-35 151.4 107 66.4
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 5.4e-35 151.0 106 67.9
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 5.4e-35 151.0 107 66.4
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 5.4e-35 151.0 106 67.9
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 5.4e-35 151.0 98 75.5
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 5.4e-35 151.0 108 67.6
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 7.1e-35 150.6 107 70.1
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 7.1e-35 150.6 107 66.4
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 1.2e-34 149.8 102 78.4
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 1.2e-34 149.8 98 71.4
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.2e-34 149.8 106 65.1
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 1.6e-34 149.4 107 65.4
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 1.6e-34 149.4 106 67.0
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.6e-34 149.4 102 67.6
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.6e-34 149.4 106 67.0
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.6e-34 149.4 107 66.4
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.6e-34 149.4 106 66.0
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 2.1e-34 149.1 98 70.4
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 2.1e-34 149.1 98 71.4
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 2.1e-34 149.1 109 67.0
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 2.7e-34 148.7 110 64.5
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 2.7e-34 148.7 106 67.9
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.7e-34 148.7 98 69.4
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.5e-34 148.3 108 64.8
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.5e-34 148.3 107 65.4
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 4.6e-34 147.9 102 77.5
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 4.6e-34 147.9 98 70.4
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 4.6e-34 147.9 98 70.4
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 4.6e-34 147.9 108 64.8
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.6e-34 147.9 108 64.8
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.6e-34 147.9 108 64.8
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.6e-34 147.9 108 64.8
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 4.6e-34 147.9 107 66.4
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 4.6e-34 147.9 108 64.8
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 4.6e-34 147.9 106 67.9
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 6.0e-34 147.5 106 64.2
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 6.0e-34 147.5 106 64.2
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 7.9e-34 147.1 110 64.5
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 7.9e-34 147.1 108 66.7
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.0e-33 146.7 98 68.4
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.0e-33 146.7 108 64.8
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.0e-33 146.7 104 65.4
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.0e-33 146.7 104 65.4
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.0e-33 146.7 107 65.4
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 1.0e-33 146.7 109 63.3
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 1.0e-33 146.7 106 64.2
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.3e-33 146.4 106 66.0
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.3e-33 146.4 107 63.6
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.3e-33 146.4 107 63.6
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 1.3e-33 146.4 106 63.2
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 1.8e-33 146.0 103 68.9
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 1.8e-33 146.0 98 69.4
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 2.3e-33 145.6 107 64.5
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 2.3e-33 145.6 105 65.7
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 3.0e-33 145.2 99 67.7
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 3.0e-33 145.2 110 62.7
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 3.0e-33 145.2 107 64.5
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 3.0e-33 145.2 104 64.4
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 3.0e-33 145.2 104 64.4
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 3.9e-33 144.8 107 64.5
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 3.9e-33 144.8 98 67.3
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 3.9e-33 144.8 103 68.0
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 6.7e-33 144.1 110 62.7
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 8.7e-33 143.7 110 63.6
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 8.7e-33 143.7 105 65.7
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.1e-32 143.3 109 61.5
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 1.5e-32 142.9 107 65.4
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 1.5e-32 142.9 106 62.3
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.9e-32 142.5 98 66.3
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 3.3e-32 141.7 98 68.4
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 4.3e-32 141.4 107 63.6
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 4.3e-32 141.4 98 69.4
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 4.3e-32 141.4 97 70.1
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 5.6e-32 141.0 98 68.4
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 9.6e-32 140.2 103 64.1
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 2.1e-31 139.0 84 89.3
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 2.8e-31 138.7 107 60.7
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 2.8e-31 138.7 107 60.7
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 6.2e-31 137.5 103 64.1
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 1.4e-30 136.3 98 64.3
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 1.4e-30 136.3 90 71.1
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 1.8e-30 136.0 103 63.1
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 3.1e-30 135.2 97 64.9
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 4.0e-30 134.8 102 64.7
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 1.2e-29 133.3 93 66.7
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 1.3e-28 129.8 98 63.3
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 3.8e-28 128.3 107 60.7
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.9e-28 127.9 95 64.2
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 2.1e-23 112.5 86 62.8
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 4.8e-23 111.3 97 57.7
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 4.0e-22 108.2 84 63.1
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 9.0e-22 107.1 92 59.8
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 3.4e-21 105.1 84 61.9
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 2.5e-19 99.0 84 59.5
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.2e-18 96.7 107 49.5
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 2.7e-18 95.5 66 65.2
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.8e-17 92.8 87 55.2
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 5.1e-17 91.3 75 61.3
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.4e-14 83.2 65 58.5
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 6.9e-14 80.9 51 70.6
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 1.3e-12 76.6 57 64.9
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 5.5e-11 71.2 45 71.1
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 7.2e-11 70.9 54 61.1
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.2e-10 70.1 45 68.9
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 2.1e-10 69.3 108 38.9
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 2.7e-10 68.9 86 41.9
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.8e-09 66.2 75 46.7
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 5.1e-09 64.7 82 41.5
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 1.1e-06 57.0 44 63.6


User provided reference genes

Program Settings