Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 1.9e-226 788.9 404 100.0
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 3.5e-132 475.7 413 64.4
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 5.6e-130 468.4 414 63.3
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 6.4e-126 454.9 417 61.4
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 4.6e-124 448.7 399 63.2
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 2.8e-121 439.5 413 60.5
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 1.8e-115 420.2 397 59.4
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 1.8e-115 420.2 395 59.7
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 1.1e-112 411.0 395 58.7
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 4.5e-111 405.6 419 55.1
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 2.1e-108 396.7 390 58.5
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 2.1e-108 396.7 390 58.5
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 6.7e-83 312.0 373 47.2
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 2.0e-82 310.5 373 46.9
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 5.7e-82 308.9 251 65.3
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 1.4e-80 304.3 443 41.3
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 4.1e-80 302.8 379 46.4
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 3.8e-78 296.2 362 48.3
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 4.2e-77 292.7 387 46.0
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 4.7e-76 289.3 379 46.4
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 6.1e-76 288.9 380 46.1
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 1.5e-74 284.3 469 39.4
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 2.2e-73 280.4 406 44.6
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 2.2e-73 280.4 378 43.4
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 1.8e-72 277.3 390 41.8
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 3.1e-72 276.6 433 40.9
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 3.1e-72 276.6 360 45.3
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 9.1e-72 275.0 499 37.7
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 1.2e-71 274.6 400 42.5
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 1.6e-71 274.2 430 41.6
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 4.5e-71 272.7 362 45.0
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 5.9e-71 272.3 433 42.0
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 7.7e-71 271.9 360 45.3
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 2.9e-70 270.0 361 46.0
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 1.1e-69 268.1 350 44.9
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 1.1e-69 268.1 390 41.8
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 1.5e-69 267.7 425 40.7
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 7.2e-69 265.4 362 43.9
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 9.4e-69 265.0 418 40.9
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 1.2e-68 264.6 458 38.9
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.1e-68 263.8 382 42.9
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 2.1e-68 263.8 455 40.7
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 2.7e-68 263.5 440 40.2
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 8.0e-68 261.9 348 45.7
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.0e-67 261.5 435 39.8
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.0e-67 261.5 395 43.5
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 1.4e-67 261.2 381 42.0
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 1.8e-67 260.8 391 42.7
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.8e-67 260.8 395 42.3
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 3.0e-67 260.0 455 40.0
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.5e-66 255.4 345 43.5
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 2.2e-65 253.8 361 42.7
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 2.8e-65 253.4 368 44.0
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 3.7e-65 253.1 362 42.3
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 4.8e-65 252.7 360 44.7
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 6.3e-65 252.3 361 44.9
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 1.4e-64 251.1 451 37.9
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 5.3e-64 249.2 370 42.7
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.0e-64 248.8 378 42.3
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 7.0e-64 248.8 379 41.2
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 1.6e-63 247.7 353 41.9
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 2.7e-63 246.9 358 43.6
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.3e-62 244.6 346 41.9
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.7e-62 244.2 422 40.0
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 2.2e-62 243.8 379 41.2
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 2.2e-62 243.8 357 41.2
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 2.2e-62 243.8 368 39.7
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 3.8e-62 243.0 361 43.2
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 5.0e-62 242.7 369 40.7
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.9e-61 240.7 427 36.8
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 1.9e-61 240.7 443 36.3
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 4.2e-61 239.6 364 39.6
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 7.2e-61 238.8 353 41.6
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 9.4e-61 238.4 148 77.7
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 9.4e-61 238.4 358 42.5
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 3.6e-60 236.5 409 39.1
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.4e-59 234.6 433 35.8
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 4.0e-59 233.0 361 42.4
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 5.2e-59 232.6 359 42.3
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 8.8e-59 231.9 350 40.9
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 1.8e-56 224.2 354 39.8
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 5.4e-56 222.6 438 34.9
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 3.8e-54 216.5 362 39.2
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.0e-54 216.1 334 40.1
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 8.6e-54 215.3 362 39.2
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 1.2e-52 211.5 358 39.7
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 4.7e-52 209.5 355 41.7
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.8e-51 207.6 356 39.6
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.8e-51 205.7 362 37.6
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 8.9e-51 205.3 361 38.5
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.8e-47 192.2 354 37.3
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 1.0e-46 191.8 488 32.2
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 2.9e-46 190.3 480 31.2
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 8.6e-46 188.7 375 36.8
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.6e-44 184.5 242 45.5
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.1e-44 184.1 300 39.7
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 4.7e-44 183.0 236 47.5
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 1.8e-43 181.0 194 51.5
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.8e-43 179.1 311 37.6
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 3.4e-42 176.8 564 30.7
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.6e-39 167.9 187 54.5
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 2.0e-39 167.5 359 33.4
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 5.6e-37 159.5 186 47.3
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 1.2e-34 151.8 168 47.0
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 3.7e-33 146.7 338 33.7
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 1.3e-30 138.3 300 30.7
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 4.3e-29 133.3 371 29.1
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 1.7e-25 121.3 367 28.6
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.7e-25 121.3 284 31.0
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.1e-24 118.6 111 53.2
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 6.6e-22 109.4 82 67.1
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 1.4e-19 101.7 337 27.9
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 1.8e-19 101.3 86 54.7
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 3.1e-19 100.5 144 36.8
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 6.8e-19 99.4 101 55.4
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 1.1e-16 92.0 126 40.5
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 1.4e-16 91.7 100 49.0
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 5.1e-14 83.2 90 45.6
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 1.2e-12 78.6 62 61.3
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 8.1e-12 75.9 56 60.7
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 2.3e-06 57.8 135 25.9


User provided reference genes

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