Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 0.0e+00 1479.9 774 100.0
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.0e-281 973.4 865 66.5
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.9e-276 955.3 853 65.9
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 4.8e-271 937.9 877 62.6
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 8.2e-271 937.2 893 62.9
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.1e-270 936.8 853 65.2
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 6.9e-270 934.1 874 63.3
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.2e-268 929.1 876 63.0
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.2e-267 925.2 872 62.7
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 7.2e-267 924.1 876 63.2
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 1.8e-265 919.5 857 64.1
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.6e-263 912.9 876 62.4
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 5.5e-259 897.9 867 63.0
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 1.6e-258 896.3 866 62.4
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 8.8e-257 890.6 866 61.9
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 5.7e-256 887.9 895 61.0
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 9.7e-256 887.1 860 61.7
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.4e-251 873.2 861 61.2
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.4e-251 873.2 861 61.2
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 5.7e-248 861.3 936 57.2
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 6.5e-244 847.8 792 63.0
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 1.2e-242 843.6 927 57.0
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 1.0e-236 823.9 886 58.1
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.6e-186 657.1 907 48.0
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.4e-185 654.1 894 48.0
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 1.1e-182 644.4 901 47.2
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.6e-181 640.6 894 47.2
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 1.6e-181 640.6 910 47.3
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 6.0e-181 638.6 884 47.4
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 6.6e-180 635.2 932 46.6
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 2.4e-177 626.7 892 47.4
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 4.0e-177 625.9 908 46.0
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 4.5e-176 622.5 867 48.7
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 5.8e-176 622.1 872 47.2
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 2.9e-175 619.8 876 48.5
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.2e-173 614.4 897 45.7
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.8e-172 610.5 899 46.8
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 3.9e-172 609.4 897 44.8
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 8.7e-172 608.2 878 46.4
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 3.3e-171 606.3 865 47.5
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 7.4e-171 605.1 887 45.8
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 6.2e-170 602.1 874 46.2
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 1.1e-169 601.3 899 45.2
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-169 600.9 887 45.7
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 1.4e-169 600.9 943 43.8
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 1.8e-169 600.5 906 44.6
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 4.0e-169 599.4 860 47.1
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 5.3e-169 599.0 897 45.3
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 2.6e-168 596.7 926 44.8
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 4.5e-168 595.9 888 45.0
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 4.5e-168 595.9 910 44.7
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 5.8e-168 595.5 889 43.9
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 5.8e-168 595.5 920 43.3
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 7.6e-168 595.1 783 48.0
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 3.8e-167 592.8 906 44.8
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 8.4e-167 591.7 726 49.7
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 3.2e-166 589.7 780 48.6
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.5e-165 586.3 888 43.6
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.8e-164 583.9 884 45.9
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 5.1e-164 582.4 961 42.7
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 8.7e-164 581.6 907 43.2
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 1.5e-163 580.9 960 42.6
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 4.3e-163 579.3 901 44.2
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 9.6e-163 578.2 736 47.8
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 9.6e-163 578.2 803 47.2
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 1.8e-161 573.9 930 44.1
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 1.8e-161 573.9 890 44.7
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 3.1e-161 573.2 788 46.7
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.9e-161 572.0 935 43.9
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.2e-160 571.2 900 45.2
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 2.0e-160 570.5 890 44.5
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.5e-160 569.3 937 43.6
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 5.8e-160 568.9 897 44.4
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 7.6e-160 568.5 901 43.8
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.2e-159 567.0 935 44.3
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.8e-159 566.2 901 43.6
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 2.5e-158 563.5 850 43.8
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 2.5e-158 563.5 805 44.6
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.1e-158 562.0 933 43.6
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 7.1e-158 562.0 792 46.0
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 7.9e-157 558.5 801 44.8
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 7.9e-157 558.5 805 44.7
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.0e-156 558.1 871 42.5
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.0e-156 558.1 982 40.8
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 5.1e-156 555.8 1017 40.6
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 6.7e-156 555.4 809 44.7
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.7e-155 552.4 862 43.2
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 4.8e-154 549.3 833 45.0
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 6.3e-154 548.9 781 44.8
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.1e-153 548.1 795 45.9
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 9.0e-153 545.0 798 45.4
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 1.5e-152 544.3 994 40.1
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 5.9e-152 542.3 775 44.4
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.3e-151 541.2 834 44.4
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 2.9e-151 540.0 717 47.0
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 8.5e-151 538.5 957 40.5
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.1e-150 538.1 764 45.3
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.1e-149 533.9 908 42.4
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 1.8e-148 530.8 799 42.8
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 8.7e-148 528.5 960 41.4
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.1e-147 528.1 904 42.3
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 1.5e-147 527.7 768 44.3
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 4.3e-147 526.2 844 42.3
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 3.7e-146 523.1 788 43.5
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 6.3e-146 522.3 890 40.6
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 9.1e-145 518.5 822 41.8
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 7.7e-144 515.4 801 43.9
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 1.3e-143 514.6 861 42.4
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 5.0e-143 512.7 866 42.3
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 4.2e-142 509.6 767 43.4
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 4.2e-142 509.6 767 43.4
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.7e-141 506.9 927 39.6
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.0e-140 505.0 864 42.9
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 2.2e-138 497.3 820 41.0
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 2.4e-137 493.8 721 46.6
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 2.4e-137 493.8 1029 36.8
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 9.1e-137 491.9 788 42.3
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 4.5e-136 489.6 806 41.7
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 2.9e-135 486.9 981 37.5
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 2.7e-133 480.3 979 37.2
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 5.7e-131 472.6 776 43.7
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 4.8e-130 469.5 873 38.8
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 2.3e-124 450.7 767 41.2
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.1e-121 441.8 901 37.8
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 7.7e-120 435.6 797 38.4
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 2.5e-118 430.6 901 38.0
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 3.2e-118 430.3 942 36.7
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 4.0e-116 423.3 716 41.1
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 9.2e-105 385.6 735 38.8
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 3.6e-101 373.6 784 34.1
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 3.6e-101 373.6 784 34.1
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 8.3e-90 335.9 877 31.2
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 9.2e-89 332.4 731 34.9
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 6.0e-80 303.1 367 50.7
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 1.0e-79 302.4 650 36.8
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.3e-79 302.0 329 52.9
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 5.8e-75 286.6 524 41.6
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 4.7e-69 266.9 365 46.6
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.4e-57 228.0 285 48.1
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 1.3e-50 205.7 950 25.4
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.3e-50 205.7 265 48.7
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.7e-50 205.3 187 66.3
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.1e-49 202.6 380 41.3
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.5e-41 174.9 366 37.2
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 1.8e-39 168.7 469 31.6
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 3.3e-38 164.5 397 36.5
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 4.3e-38 164.1 258 40.7
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.8e-36 158.7 137 64.2
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 9.1e-28 129.8 142 50.7
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.5e-27 129.0 105 61.0
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.4e-23 115.9 178 46.1
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.3e-21 109.4 207 36.7
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 1.8e-20 105.5 86 64.0
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.4e-20 105.1 159 46.5
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 7.0e-20 103.6 92 67.4
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 2.9e-18 98.2 155 39.4
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 2.5e-17 95.1 111 52.3
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 1.2e-16 92.8 79 62.0
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 2.7e-16 91.7 76 59.2
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 1.4e-15 89.4 89 50.6
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 3.0e-15 88.2 71 64.8
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 8.8e-15 86.7 75 58.7
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 2.6e-14 85.1 89 49.4
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 5.3e-12 77.4 64 60.9
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 1.6e-11 75.9 117 40.2
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 3.5e-11 74.7 80 55.0
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 7.7e-11 73.6 62 61.3
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 7.7e-11 73.6 69 56.5
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.2e-10 72.0 60 68.3
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 4.2e-09 67.8 73 52.1
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 7.2e-09 67.0 116 39.7
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 4.7e-08 64.3 120 33.3
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 6.1e-08 63.9 126 35.7
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 2.0e-06 58.9 47 61.7
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 4.4e-06 57.8 72 44.4


User provided reference genes

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