Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G9300 Aethionema arabicum HOM05D007207 ORTHO05D009041 1.7e-100 369.4 192 100.0
Carub.0001s0733 Capsella rubella HOM05D007207 ORTHO05D009041 6.3e-55 218.0 209 61.2
CARHR007760 Cardamine hirsuta HOM05D007207 ORTHO05D009041 6.9e-54 214.5 203 62.1
Thhalv10008787m.g Eutrema salsugineum HOM05D007207 ORTHO05D009041 3.8e-52 208.8 193 63.2
C08p50230 Brassica napus HOM05D007207 ORTHO05D009041 3.2e-51 205.7 191 61.8
BolC8t52552H Brassica oleracea HOM05D007207 ORTHO05D009041 3.2e-51 205.7 191 61.8
Sp1g06610 Schrenkiella parvula HOM05D007207 ORTHO05D009041 3.2e-51 205.7 205 61.0
BraA09t41946Z Brassica rapa HOM05D007207 ORTHO05D009041 4.2e-51 205.3 191 60.7
A09p66080 Brassica napus HOM05D007207 ORTHO05D009041 7.2e-51 204.5 191 61.3
AT1G07980 Arabidopsis thaliana HOM05D007207 ORTHO05D009041 1.4e-46 190.3 205 56.1
BcaC07g42510 Brassica carinata HOM05D007207 ORTHO05D009041 6.5e-44 181.4 108 81.5
A06p05070 Brassica napus HOM05D007207 ORTHO05D009041 2.5e-43 179.5 191 55.5
BraA06t23713Z Brassica rapa HOM05D007207 ORTHO05D009041 3.2e-43 179.1 191 55.5
BcaC05g24714 Brassica carinata HOM05D007207 ORTHO05D009041 9.4e-43 177.6 192 57.8
C05p06030 Brassica napus HOM05D007207 ORTHO05D009041 2.1e-42 176.4 192 57.3
BcaB02g06697 Brassica carinata HOM05D007207 ORTHO05D009041 8.0e-42 174.5 189 53.4
BolC5t29362H Brassica oleracea HOM05D007207 ORTHO05D009041 3.9e-41 172.2 192 55.7
AL1G18310 Arabidopsis lyrata HOM05D007207 ORTHO05D009041 2.0e-40 169.9 208 51.9
THA.LOC104815749 Tarenaya hassleriana HOM05D007207 ORTHO05D009041 2.4e-38 162.9 166 56.6
Aa31LG8G12190 Aethionema arabicum HOM05D007207 ORTHO05D009041 1.2e-26 124.0 78 84.6
Potri.009G012300 Populus trichocarpa HOM05D007207 ORTHO05D009041 4.4e-24 115.5 139 44.6
TWI79G0777 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 7.5e-24 114.8 193 37.3
TWI75G1762 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 6.3e-23 111.7 105 52.4
Thecc.09G257600 Theobroma cacao HOM05D007207 ORTHO05D009041 1.1e-22 110.9 92 57.6
MD03G1114400 Malus domestica HOM05D007207 ORTHO05D009041 3.1e-22 109.4 156 42.3
Duzib170G0585 Durio zibethinus HOM05D007207 ORTHO05D009041 7.0e-22 108.2 102 51.0
FvH4_3g32640 Fragaria vesca HOM05D007207 ORTHO05D009041 7.0e-22 108.2 97 52.6
FAN11G2184 Fragaria x ananassa HOM05D007207 ORTHO05D009041 7.0e-22 108.2 97 52.6
Duzib168G2405 Durio zibethinus HOM05D007207 ORTHO05D009041 1.2e-21 107.5 94 52.1
FAN21G0351 Fragaria x ananassa HOM05D007207 ORTHO05D009041 2.0e-21 106.7 97 51.5
Sc06g0010040 Simmondsia chinensis HOM05D007207 ORTHO05D009041 2.0e-21 106.7 101 49.5
FAN25G0070 Fragaria x ananassa HOM05D007207 ORTHO05D009041 2.7e-21 106.3 93 53.8
Manes.04G022800 Manihot esculenta HOM05D007207 ORTHO05D009041 2.7e-21 106.3 89 58.4
RcHm_v2.0_Chr5g0059711 Rosa chinensis HOM05D007207 ORTHO05D009041 2.7e-21 106.3 97 51.5
Sed0024734 Sechium edule HOM05D007207 ORTHO05D009041 2.7e-21 106.3 156 39.7
Nn2g13070 Nelumbo nucifera HOM05D007207 ORTHO05D009041 3.5e-21 105.9 98 54.1
Gohir.A07G117400 Gossypium hirsutum HOM05D007207 ORTHO05D009041 5.9e-21 105.1 91 50.5
QL01p022653 Quercus lobata HOM05D007207 ORTHO05D009041 5.9e-21 105.1 99 54.5
TAR633G1504 Trochodendron aralioides HOM05D000656 ORTHO05D000871 7.7e-21 104.8 89 57.3
CiPaw.13G111000 Carya illinoinensis HOM05D007207 ORTHO05D009041 1.3e-20 104.0 203 35.0
Gorai.001G131300 Gossypium raimondii HOM05D007207 ORTHO05D009041 1.7e-20 103.6 91 50.5
QL01p022696 Quercus lobata HOM05D007207 ORTHO05D009041 2.3e-20 103.2 99 54.5
Hund08142 Selenicereus undatus HOM05D007207 ORTHO05D009041 2.9e-20 102.8 112 46.4
Gohir.D07G121800 Gossypium hirsutum HOM05D007207 ORTHO05D009041 3.8e-20 102.4 91 49.5
VMungo1127G1112 Vigna mungo HOM05D007207 ORTHO05D009041 1.1e-19 100.9 156 37.8
Lj3g0024872 Lotus japonicus HOM05D007207 ORTHO05D009041 1.5e-19 100.5 96 46.9
Psat7g224520 Pisum sativum HOM05D007207 ORTHO05D009041 1.9e-19 100.1 99 46.5
CANSAT54G0517 Cannabis sativa HOM05D007207 ORTHO05D009041 2.5e-19 99.8 185 36.2
Dinv32761 Davidia involucrata HOM05D007207 ORTHO05D009041 2.5e-19 99.8 94 48.9
HanXRQChr01g0018341 Helianthus annuus HOM05D007207 ORTHO05D009041 2.5e-19 99.8 135 40.7
Ciclev10030232m.g Citrus clementina HOM05D007207 ORTHO05D009041 4.2e-19 99.0 99 48.5
PSO339G6489 Papaver somniferum HOM05D007207 ORTHO05D009041 5.5e-19 98.6 93 49.5
Ca_05249_v3 Cicer arietinum L. HOM05D007207 ORTHO05D009041 7.2e-19 98.2 94 48.9
MSTRG.17815 Avicennia marina HOM05D007207 ORTHO05D009041 1.2e-18 97.4 92 52.2
Solyc06g016750.3 Solanum lycopersicum HOM05D007207 ORTHO05D009041 1.2e-18 97.4 94 46.8
EL10Ac9g22498 Beta vulgaris HOM05D007207 ORTHO05D009041 1.6e-18 97.1 128 42.2
Phvul.011G077500 Phaseolus vulgaris HOM05D007207 ORTHO05D009041 1.6e-18 97.1 148 37.8
arahy.Tifrunner.gnm1.ann1.F7CTDZ Arachis hypogaea HOM05D007207 ORTHO05D009041 2.1e-18 96.7 110 41.8
Hma1.2p1_1030F.1_g249850 Hydrangea macrophylla HOM05D007207 ORTHO05D009041 2.1e-18 96.7 112 43.8
ECA248G1375 Erigeron canadensis HOM05D000214 ORTHO05D000131 2.8e-18 96.3 95 50.5
Lsat_1_v5_gn_1_65500 Lactuca sativa HOM05D007207 ORTHO05D009041 2.8e-18 96.3 95 47.4
TPR.G17530 Trifolium pratense HOM05D007207 ORTHO05D009041 3.6e-18 95.9 92 50.0
Sopen06g007140 Solanum pennellii HOM05D007207 ORTHO05D009041 4.7e-18 95.5 94 45.7
Peaxi162Scf00686g00043 Petunia axillaris HOM05D007207 ORTHO05D009041 6.1e-18 95.1 94 46.8
PSO063G2032 Papaver somniferum HOM05D007207 ORTHO05D009041 8.0e-18 94.7 93 47.3
MBI11_g23474_MAGBIO Magnolia biondii HOM05D007207 ORTHO05D009041 1.0e-17 94.4 86 57.0
PGR102G0648 Punica granatum HOM05D007207 ORTHO05D009041 1.0e-17 94.4 96 47.9
GSVIVG01025169001 Vitis vinifera HOM05D007207 ORTHO05D009041 1.8e-17 93.6 90 47.8
AUR62039621 Chenopodium quinoa HOM05D007207 ORTHO05D009041 2.3e-17 93.2 101 47.5
Glyma.12G069100 Glycine max HOM05D007207 ORTHO05D009041 2.3e-17 93.2 141 37.6
CAN.G934.2 Capsicum annuum HOM05D007207 ORTHO05D009041 5.2e-17 92.0 92 46.7
arahy.Tifrunner.gnm1.ann1.KZS5BJ Arachis hypogaea HOM05D007207 ORTHO05D009041 6.8e-17 91.7 144 34.7
Os03g0852300 Oryza sativa ssp. japonica HOM05D007207 ORTHO05D009041 6.8e-17 91.7 87 48.3
Medtr4g059710 Medicago truncatula HOM05D007207 ORTHO05D009041 1.5e-16 90.5 94 43.6
Lalb_Chr01g0004241 Lupinus albus HOM05D007207 ORTHO05D009041 2.0e-16 90.1 107 39.3
Cc01_g11290 Coffea canephora HOM05D007207 ORTHO05D009041 3.4e-16 89.4 95 42.1
Actinidia20448 Actinidia chinensis HOM05D007207 ORTHO05D009041 4.4e-16 89.0 162 34.6
Ah.01g015070 Amaranthus hybridus HOM05D007207 ORTHO05D009041 2.8e-15 86.3 100 42.0
SEGI_13018 Sequoiadendron giganteum HOM05D007207 ORTHO05D009041 2.8e-15 86.3 100 45.0
Atru.chr3.3663 Acer truncatum HOM05D007207 ORTHO05D009041 4.9e-15 85.5 124 39.5
TAR636G0495 Trochodendron aralioides HOM05D007207 ORTHO05D009041 6.3e-15 85.1 95 46.3
SalBow3G2981 Salvia bowleyana HOM05D007207 ORTHO05D009041 8.3e-15 84.7 90 45.6
HPP92_012669 Vanilla planifolia HOM05D007207 ORTHO05D009041 1.1e-14 84.3 93 44.1
CDE06G2547 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 4.1e-14 82.4 98 44.9
MELO3C025765.2 Cucumis melo HOM05D007207 ORTHO05D009041 5.4e-14 82.0 144 34.7
Duzib170G0223 Durio zibethinus HOM05D007207 ORTHO05D009041 1.2e-13 80.9 66 56.1
AagrBONN_evm.TU.Sc2ySwM_228.2356 Anthoceros agrestis HOM05D007207 ORTHO05D009041 3.5e-13 79.3 89 38.2
CDE07G0349 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 3.5e-13 79.3 98 42.9
Sabra09G0008800 Salix brachista HOM05D007207 ORTHO05D009041 7.8e-13 78.2 162 32.7
Rhsim01G0217900 Rhododendron simsii HOM05D007207 ORTHO05D009041 2.3e-12 76.6 130 36.2
SGA_v2.0_scaffold80G25756 Striga asiatica HOM05D007207 ORTHO05D009041 2.9e-12 76.3 126 34.9
Actinidia03739 Actinidia chinensis HOM05D007207 ORTHO05D009041 3.8e-12 75.9 117 39.3
Mapoly0168s0007 Marchantia polymorpha HOM05D007207 ORTHO05D009041 6.6e-12 75.1 95 40.0
SHI06088 Sapria himalayana HOM05D007207 ORTHO05D009041 8.6e-12 74.7 163 33.1
unitig_699.g19196 Utricularia gibba HOM05D007207 ORTHO05D009041 1.5e-11 73.9 201 30.3
CsaV3_6G021790 Cucumis sativus L. HOM05D007207 ORTHO05D009041 2.5e-11 73.2 109 37.6
Pp3c17_12030 Physcomitrium patens HOM05D007207 ORTHO05D009041 7.3e-11 71.6 89 40.4
ClCG02G021080 Citrullus lanatus HOM05D007207 ORTHO05D009041 9.5e-11 71.2 68 51.5
Oeu027462.1 Olea europaea HOM05D007207 ORTHO05D009041 9.5e-11 71.2 86 41.9
Prupe.6G099600 Prunus persica HOM05D007207 ORTHO05D009041 1.2e-10 70.9 119 37.0
PGSC0003DMG401030137 Solanum tuberosum HOM05D038777 ORTHO05D009041 6.1e-10 68.6 92 34.8
Glyma.11G148000 Glycine max HOM05D007207 ORTHO05D009041 1.4e-09 67.4 112 33.0
AUR62024995 Chenopodium quinoa HOM05D007207 ORTHO05D009041 2.6e-08 63.2 61 47.5
Migut.N02608 Erythranthe guttata HOM05D007207 ORTHO05D009041 4.4e-08 62.4 61 45.9
vmacro14446 Vaccinium macrocarpon HOM05D007207 ORTHO05D009041 5.8e-08 62.0 141 32.6
CBR_g30333 Chara braunii HOM05D000789 ORTHO05D000897 7.5e-08 61.6 139 25.9
Ah.13g074110 Amaranthus hybridus HOM05D000789 ORTHO05D000897 4.9e-07 58.9 83 33.7
TPR.G9941 Trifolium pratense HOM05D000789 ORTHO05D000897 6.4e-07 58.5 83 33.7
Zm00001eb064730 Zea mays HOM05D007207 ORTHO05D009041 6.4e-07 58.5 134 28.4
EL10Ac3g06402 Beta vulgaris HOM05D000789 ORTHO05D000897 2.4e-06 56.6 128 25.0
Lj6g0010334 Lotus japonicus HOM05D000789 ORTHO05D000897 4.1e-06 55.8 96 32.3
Potri.001G055000 Populus trichocarpa HOM05D007500 ORTHO05D009197 5.4e-06 55.5 86 34.9
EL10Ac6g13495 Beta vulgaris HOM05D007500 ORTHO05D009197 7.0e-06 55.1 88 33.0
VMungo0540G2184 Vigna mungo HOM05D000789 ORTHO05D000897 7.0e-06 55.1 87 29.9
Lsat_1_v5_gn_8_131281 Lactuca sativa HOM05D007500 ORTHO05D009197 9.2e-06 54.7 84 35.7
Medtr3g085430 Medicago truncatula HOM05D007500 ORTHO05D009197 9.2e-06 54.7 94 29.8


User provided reference genes

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