Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 5.5e-139 497.7 256 100.0
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 2.8e-90 335.9 256 69.5
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 1.0e-89 334.0 256 67.6
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 2.0e-88 329.7 256 68.0
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 4.4e-88 328.6 256 67.6
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 7.5e-88 327.8 256 67.6
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 9.8e-88 327.4 256 67.6
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 2.8e-87 325.9 254 67.7
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 4.1e-86 322.0 254 66.5
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 5.4e-86 321.6 255 67.5
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 9.2e-86 320.9 256 66.8
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 1.6e-85 320.1 257 67.3
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 4.5e-85 318.5 254 65.7
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 4.5e-85 318.5 256 65.2
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 5.9e-85 318.2 255 66.7
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 5.0e-84 315.1 255 65.9
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 8.6e-84 314.3 255 65.5
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 5.6e-83 311.6 249 67.5
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 5.6e-83 311.6 257 63.4
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 4.7e-82 308.5 254 65.4
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 4.7e-82 308.5 254 65.4
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 2.6e-72 276.2 256 55.9
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 1.3e-71 273.9 254 55.5
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 8.3e-71 271.2 254 55.5
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 2.4e-70 269.6 256 53.1
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 2.7e-69 266.2 254 53.9
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 3.5e-69 265.8 238 56.3
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 4.6e-69 265.4 254 53.5
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 3.3e-67 259.2 254 53.5
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 3.3e-67 259.2 254 53.1
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 5.6e-67 258.5 243 53.9
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 9.5e-67 257.7 247 53.4
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.1e-66 254.6 254 51.2
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.1e-65 254.2 254 51.6
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 3.1e-65 252.7 248 53.6
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.6e-64 249.6 236 55.5
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 2.6e-64 249.6 244 52.5
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 1.3e-63 247.3 254 50.4
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.3e-63 247.3 231 55.4
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 4.9e-63 245.4 255 49.8
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 6.4e-63 245.0 252 50.0
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.4e-62 243.8 257 50.2
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.9e-62 243.4 254 50.8
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 3.2e-62 242.7 256 51.6
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 7.1e-62 241.5 242 53.3
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 1.2e-61 240.7 254 52.0
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 2.7e-61 239.6 256 49.6
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 7.8e-61 238.0 254 50.8
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 7.8e-61 238.0 243 53.5
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.0e-60 237.7 256 50.0
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 1.3e-60 237.3 256 50.0
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 3.0e-60 236.1 243 49.8
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 3.9e-60 235.7 254 50.0
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 3.9e-60 235.7 240 50.8
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 8.6e-60 234.6 248 52.0
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 8.6e-60 234.6 248 50.8
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 1.1e-59 234.2 249 48.2
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 1.5e-59 233.8 247 49.8
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 1.9e-59 233.4 241 52.7
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 7.3e-59 231.5 241 51.9
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 7.3e-59 231.5 254 45.7
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.2e-58 230.7 254 48.0
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 1.6e-58 230.3 250 50.4
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 2.1e-58 229.9 254 48.4
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 2.1e-58 229.9 240 50.4
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 3.6e-58 229.2 238 49.2
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 3.6e-58 229.2 254 45.3
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 4.7e-58 228.8 238 49.2
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.8e-57 226.9 235 50.6
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 1.8e-57 226.9 235 50.6
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 2.4e-57 226.5 240 51.2
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 3.1e-57 226.1 256 45.3
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 4.0e-57 225.7 238 49.2
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 6.8e-57 224.9 213 52.1
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 8.9e-57 224.6 251 46.2
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 3.4e-56 222.6 247 50.6
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 5.8e-56 221.9 257 47.5
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 9.9e-56 221.1 238 48.3
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 1.7e-55 220.3 252 44.4
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 2.9e-55 219.5 255 47.8
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 2.9e-55 219.5 189 59.8
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 6.4e-55 218.4 249 47.4
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.4e-54 217.2 242 49.6
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.2e-54 215.7 237 49.4
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 5.4e-54 215.3 246 48.4
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 7.1e-54 214.9 227 49.8
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 9.2e-54 214.5 239 46.4
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 1.2e-53 214.2 255 45.1
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 1.6e-53 213.8 236 50.4
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 2.1e-53 213.4 250 45.2
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 3.5e-53 212.6 245 48.2
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 3.5e-53 212.6 248 48.0
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 3.5e-53 212.6 239 46.9
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 3.5e-53 212.6 213 54.5
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 6.0e-53 211.8 224 50.0
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.3e-52 210.7 240 46.7
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.7e-52 210.3 226 49.6
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.7e-52 210.3 242 46.7
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 3.0e-52 209.5 237 46.0
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.0e-52 209.5 237 48.9
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 3.9e-52 209.1 242 47.5
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.9e-51 206.8 232 48.3
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 2.5e-51 206.5 270 45.6
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 9.6e-51 204.5 239 43.5
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 9.6e-51 204.5 228 50.0
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 9.6e-51 204.5 228 50.0
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 3.6e-50 202.6 236 48.3
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 8.1e-50 201.4 236 45.8
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 1.4e-49 200.7 181 58.0
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 1.5e-48 197.2 235 43.8
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 2.6e-48 196.4 235 43.4
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 5.8e-48 195.3 233 42.9
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 5.8e-48 195.3 237 43.9
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 7.6e-48 194.9 253 45.1
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 3.8e-47 192.6 247 47.4
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 8.4e-47 191.4 227 47.1
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.1e-46 191.0 238 44.1
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.1e-46 191.0 237 44.3
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 3.2e-46 189.5 244 40.2
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 4.2e-46 189.1 228 47.4
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 5.4e-46 188.7 229 47.2
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 7.1e-46 188.3 166 59.0
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 9.3e-46 188.0 254 40.2
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.7e-45 186.4 232 46.6
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 5.6e-43 178.7 197 48.7
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 9.6e-43 177.9 227 41.9
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.6e-42 177.2 190 49.5
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.6e-42 177.2 190 49.5
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 2.2e-39 166.8 203 41.9
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 1.9e-38 163.7 210 44.8
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 7.1e-38 161.8 217 44.7
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 8.7e-36 154.8 262 37.8
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.9e-35 153.7 210 42.4
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 1.7e-31 140.6 242 34.7
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 4.6e-29 132.5 236 34.3
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 3.9e-28 129.4 169 45.0
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 5.6e-27 125.6 179 43.0
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 1.8e-25 120.6 101 57.4
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 1.9e-22 110.5 145 44.8
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 4.6e-21 105.9 238 33.2
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 4.6e-21 105.9 137 45.3
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 6.7e-20 102.1 86 58.1
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 8.7e-20 101.7 97 50.5
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 2.8e-18 96.7 86 54.7
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 8.2e-18 95.1 86 57.0
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 1.9e-14 84.0 249 28.1
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 1.6e-13 80.9 150 40.7
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 2.1e-13 80.5 138 36.2
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 5.1e-12 75.9 85 42.4
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 1.3e-10 71.2 139 31.7
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.0e-07 61.6 52 55.8
BolC3t13711H Brassica oleracea HOM05D000444 ORTHO05D000489 1.1e-06 58.2 44 65.9


User provided reference genes

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