Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.8e-249 865.5 470 100.0
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 5.2e-196 688.0 476 82.8
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 2.9e-194 682.2 473 82.2
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 3.8e-194 681.8 475 79.8
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 3.8e-194 681.8 474 81.4
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 6.0e-192 674.5 472 82.0
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 4.2e-185 651.7 473 77.8
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 7.8e-184 647.5 475 77.9
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 1.7e-183 646.4 475 77.7
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 1.7e-183 646.4 473 78.9
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 8.7e-183 644.0 470 78.5
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 2.5e-182 642.5 471 77.7
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 4.5e-179 631.7 469 78.5
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 3.1e-172 609.0 488 70.5
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 7.9e-152 541.2 478 62.6
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 2.4e-148 529.6 474 62.0
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 3.1e-148 529.3 478 61.3
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 5.9e-147 525.0 477 62.1
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 1.7e-146 523.5 478 60.9
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 2.9e-146 522.7 482 60.2
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 2.9e-146 522.7 481 63.8
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 6.5e-146 521.5 499 59.3
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 5.5e-145 518.5 478 62.8
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 2.1e-144 516.5 473 61.5
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 2.7e-144 516.2 481 62.4
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 4.7e-144 515.4 500 58.8
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 7.9e-144 514.6 479 62.8
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 3.0e-143 512.7 484 59.7
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 3.9e-143 512.3 473 61.3
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 4.4e-142 508.8 470 58.7
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 8.2e-141 504.6 480 59.2
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 2.6e-139 499.6 474 60.8
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.0e-138 497.7 475 60.4
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 1.3e-138 497.3 480 61.7
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 1.7e-138 496.9 488 58.6
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 3.8e-138 495.7 501 56.9
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 8.5e-138 494.6 477 57.0
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 1.9e-137 493.4 475 59.2
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 1.2e-136 490.7 477 58.5
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 1.6e-136 490.3 476 61.8
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 2.7e-136 489.6 490 59.4
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 3.6e-136 489.2 479 58.2
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 6.1e-136 488.4 477 59.7
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 1.0e-135 487.6 476 57.8
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 1.4e-135 487.3 492 56.9
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 3.0e-135 486.1 492 55.9
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 3.0e-135 486.1 492 55.9
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 3.0e-135 486.1 479 57.6
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 3.9e-135 485.7 477 56.8
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 3.9e-135 485.7 489 55.6
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 5.2e-135 485.3 468 58.5
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 6.7e-135 485.0 469 58.2
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 4.4e-134 482.3 476 56.1
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 5.7e-134 481.9 474 61.6
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 5.7e-134 481.9 478 59.0
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 5.7e-134 481.9 480 57.5
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 7.4e-134 481.5 483 56.9
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 7.4e-134 481.5 490 56.9
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 9.7e-134 481.1 480 58.3
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 9.7e-134 481.1 467 58.0
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 2.8e-133 479.6 521 54.5
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 3.7e-133 479.2 484 57.4
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 8.2e-133 478.0 486 55.1
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.4e-132 477.2 474 61.0
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 1.8e-132 476.9 477 59.1
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 4.1e-132 475.7 469 58.4
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 4.1e-132 475.7 467 57.0
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 4.1e-132 475.7 474 58.0
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 1.2e-131 474.2 471 59.0
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 5.9e-131 471.9 481 57.4
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 7.7e-131 471.5 474 58.2
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 1.0e-130 471.1 469 54.8
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 1.7e-130 470.3 514 53.5
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 1.7e-130 470.3 476 57.1
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.7e-130 470.3 493 55.0
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 2.9e-130 469.5 476 60.3
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 3.8e-130 469.2 481 55.7
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 3.2e-129 466.1 484 55.6
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 2.1e-128 463.4 480 55.6
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 4.7e-128 462.2 472 58.3
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 6.1e-128 461.8 461 56.6
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 1.4e-127 460.7 502 55.2
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 3.0e-127 459.5 477 55.3
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 3.0e-127 459.5 471 59.4
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 3.3e-126 456.1 477 54.3
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 3.7e-125 452.6 493 56.4
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.8e-124 450.3 485 54.4
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 8.5e-122 441.4 474 54.0
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 1.2e-118 431.0 488 56.1
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 2.0e-118 430.3 482 53.3
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 8.3e-117 424.9 376 58.8
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 1.4e-116 424.1 478 52.1
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 5.0e-114 415.6 403 58.3
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 1.8e-111 407.1 398 61.1
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 1.8e-111 407.1 428 54.9
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 6.8e-111 405.2 482 49.4
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 3.4e-110 402.9 482 49.2
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 7.5e-110 401.7 481 50.9
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.4e-108 396.7 402 56.5
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 4.1e-108 396.0 470 50.6
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 4.5e-107 392.5 430 53.5
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 5.0e-106 389.0 404 56.9
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.3e-98 364.4 228 86.8
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 8.0e-96 355.1 494 48.0
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 6.8e-95 352.1 320 57.8
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 2.7e-83 313.5 461 43.2
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 1.0e-82 311.6 478 45.4
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 2.3e-74 283.9 198 72.2
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 1.5e-73 281.2 472 40.5
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 5.6e-73 279.3 404 43.1
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 8.4e-69 265.4 470 39.8
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.1e-68 265.0 151 94.0
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 5.1e-66 256.1 313 49.2
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 9.3e-60 235.3 309 47.6
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 3.3e-57 226.9 350 40.3
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 2.8e-56 223.8 229 55.9
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 6.9e-55 219.2 292 46.9
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 9.0e-55 218.8 230 51.7
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 7.6e-54 215.7 239 49.0
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 5.8e-46 189.5 336 36.9
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 1.3e-42 178.3 314 41.1
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 6.9e-39 166.0 235 42.1
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 2.8e-32 144.1 296 34.8
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 6.7e-26 122.9 138 50.0
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 4.1e-23 113.6 192 40.6
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 2.6e-22 110.9 178 50.6
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 1.9e-20 104.8 110 57.3
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 2.1e-19 101.3 94 54.3
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 3.1e-15 87.4 74 60.8
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 7.7e-14 82.8 261 26.8
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 2.8e-08 64.3 196 28.6
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.4e-07 62.0 184 29.9
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.8e-07 61.6 169 29.6
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.8e-07 61.6 191 28.8
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 2.4e-07 61.2 173 30.1
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 5.4e-07 60.1 188 27.7
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 7.0e-07 59.7 170 32.4
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 9.1e-07 59.3 130 29.2
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.2e-06 58.9 188 28.7
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.2e-06 58.9 172 26.7
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.2e-06 58.9 176 29.0
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.6e-06 58.5 185 28.6
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.7e-06 57.8 125 34.4
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.7e-06 57.8 168 28.0
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.7e-06 57.8 193 26.9
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 3.5e-06 57.4 136 30.9
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 3.5e-06 57.4 170 28.8
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 4.5e-06 57.0 193 28.5
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 4.5e-06 57.0 193 28.5
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.5e-06 57.0 148 30.4
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 5.9e-06 56.6 140 30.7
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 5.9e-06 56.6 203 28.6
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 5.9e-06 56.6 171 26.3
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 5.9e-06 56.6 185 27.0
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 7.7e-06 56.2 146 28.8


User provided reference genes

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