Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 2.3e-279 964.9 490 100.0
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 4.8e-208 728.0 494 77.7
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 3.3e-201 705.3 492 75.8
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 1.1e-199 700.3 491 73.1
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 5.8e-198 694.5 493 75.1
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 4.2e-196 688.3 495 74.7
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 1.2e-195 686.8 487 75.6
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 6.7e-194 681.0 491 74.1
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 2.5e-188 662.5 495 70.9
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 3.4e-182 642.1 498 70.5
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 1.0e-181 640.6 493 70.0
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 2.2e-181 639.4 493 70.2
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 2.5e-180 636.0 492 69.9
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 6.7e-178 627.9 490 69.6
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 4.8e-168 595.1 502 61.8
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 9.7e-161 570.9 456 63.6
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 1.7e-160 570.1 472 61.7
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 2.2e-160 569.7 462 63.0
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 2.2e-160 569.7 511 59.1
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 2.8e-160 569.3 473 62.8
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 4.8e-160 568.5 487 60.0
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 1.4e-159 567.0 465 62.2
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 7.0e-159 564.7 465 62.4
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 7.0e-159 564.7 459 63.4
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 1.2e-158 563.9 478 61.9
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 2.0e-158 563.1 466 62.2
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 4.5e-158 562.0 490 60.8
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 1.0e-157 560.8 461 62.7
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 3.8e-157 558.9 491 60.3
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 6.5e-157 558.1 475 61.1
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 1.2e-155 553.9 465 60.6
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.4e-154 550.4 506 58.5
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 4.0e-154 548.9 446 62.6
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 1.2e-153 547.4 479 60.5
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 4.4e-153 545.4 457 60.2
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.3e-152 543.9 462 60.0
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 1.3e-152 543.9 452 61.5
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 2.8e-152 542.7 472 58.9
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 4.8e-152 542.0 433 62.4
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 6.3e-152 541.6 472 58.7
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 8.3e-152 541.2 469 57.8
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.1e-151 540.8 490 58.4
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 1.8e-151 540.0 416 65.1
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 2.4e-151 539.7 462 59.3
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 2.4e-151 539.7 446 62.1
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.1e-151 539.3 506 57.3
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 5.4e-151 538.5 481 58.4
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 5.4e-151 538.5 486 59.1
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 9.1e-151 537.7 486 57.8
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 1.2e-150 537.3 492 54.9
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 1.2e-150 537.3 479 59.1
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.5e-150 535.8 506 56.9
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 3.5e-150 535.8 476 56.5
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.7e-149 533.5 477 57.2
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 3.2e-148 529.3 461 57.9
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 8.0e-147 524.6 456 58.6
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 1.4e-146 523.9 479 58.0
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 1.8e-146 523.5 478 58.2
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 3.0e-146 522.7 468 59.4
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 4.4e-145 518.8 451 58.5
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 2.8e-144 516.2 468 59.0
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 1.4e-143 513.8 450 59.3
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.0e-143 511.5 479 57.8
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.3e-141 507.3 506 55.3
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 2.3e-141 506.5 480 55.8
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 8.6e-141 504.6 460 56.1
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.5e-140 503.1 502 55.4
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.5e-140 503.1 418 60.8
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.3e-140 502.7 418 60.8
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 7.2e-140 501.5 460 55.9
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 9.5e-140 501.1 473 54.8
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 1.6e-139 500.4 491 55.8
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 3.6e-139 499.2 489 55.0
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 4.7e-139 498.8 478 55.6
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 8.0e-139 498.0 484 55.4
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 8.0e-139 498.0 470 56.6
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 3.0e-138 496.1 471 56.3
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 5.2e-138 495.4 462 55.4
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 5.2e-138 495.4 488 55.1
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 5.7e-137 491.9 463 56.6
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 7.5e-137 491.5 458 55.7
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 9.8e-137 491.1 466 54.9
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 4.9e-136 488.8 497 54.1
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 4.9e-136 488.8 480 53.1
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 8.3e-136 488.0 354 66.4
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 1.8e-135 486.9 447 57.5
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 9.2e-135 484.6 476 52.3
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 1.2e-134 484.2 481 53.0
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 4.4e-129 465.7 473 55.0
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 8.6e-125 451.4 403 59.1
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 8.1e-123 444.9 338 62.7
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 2.3e-122 443.4 478 50.6
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 1.5e-121 440.7 422 55.2
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 9.8e-121 438.0 430 55.3
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 5.4e-119 432.2 392 56.1
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 3.3e-108 396.4 449 50.3
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 6.2e-107 392.1 449 49.9
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 9.9e-105 384.8 395 50.9
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 1.9e-103 380.6 399 52.1
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 9.3e-103 378.3 316 60.1
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 3.3e-100 369.8 398 50.5
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 2.0e-97 360.5 395 47.1
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 3.2e-87 326.6 366 51.1
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.9e-76 290.8 221 62.0
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 1.4e-66 258.1 377 38.7
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 4.3e-60 236.5 336 44.9
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.5e-57 228.0 192 56.8
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 7.0e-50 202.6 185 56.2
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 1.6e-41 174.9 210 44.3
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 1.0e-37 162.2 318 33.3
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.3e-27 128.6 183 49.2
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 1.0e-24 119.0 140 51.4
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 5.7e-20 103.2 90 57.8
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 1.4e-18 98.6 106 47.2
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 1.6e-17 95.1 230 29.6
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 2.1e-14 84.7 132 42.4
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 2.3e-13 81.3 437 21.5
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 7.5e-12 76.3 243 23.5
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 7.5e-12 76.3 243 23.5
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 1.6e-09 68.6 139 28.1
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.3e-08 65.5 96 44.8
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 3.3e-07 60.8 218 25.7
FvH4_1g00580 Fragaria vesca HOM05D006258 ORTHO05D007961 3.3e-07 60.8 166 26.5
FAN28G2306 Fragaria x ananassa HOM05D006258 ORTHO05D007961 3.3e-07 60.8 166 26.5
FAN26G2355 Fragaria x ananassa HOM05D006258 ORTHO05D007961 1.2e-06 58.9 166 25.9
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 6.2e-06 56.6 173 23.7
MD15G1148600 Malus domestica HOM05D006258 ORTHO05D007961 6.2e-06 56.6 133 26.3
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 8.1e-06 56.2 165 24.8


User provided reference genes

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