Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 2.9e-202 708.4 359 100.0
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 1.1e-180 636.7 359 89.4
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 1.8e-180 636.0 359 89.4
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 1.8e-180 636.0 359 89.4
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 1.8e-180 636.0 359 89.4
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 2.4e-180 635.6 360 89.4
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 5.2e-180 634.4 359 89.4
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 6.9e-180 634.0 359 88.9
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.5e-179 632.9 360 90.3
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 1.7e-178 629.4 359 88.9
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 1.7e-178 629.4 359 88.9
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 2.9e-178 628.6 360 89.7
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 2.4e-177 625.5 360 89.2
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 2.8e-173 612.1 348 89.7
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 2.8e-173 612.1 348 89.7
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 2.8e-173 612.1 348 89.7
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.0e-167 593.6 348 86.5
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.0e-159 565.5 341 85.9
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 7.6e-155 550.8 348 79.0
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 6.0e-152 541.2 361 76.2
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 3.9e-151 538.5 362 76.5
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 8.7e-151 537.3 355 77.7
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 2.5e-150 535.8 350 78.0
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 3.3e-150 535.4 362 76.5
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 1.6e-149 533.1 349 77.4
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 2.2e-149 532.7 358 76.8
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 3.7e-149 531.9 368 74.7
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 4.8e-149 531.6 347 78.1
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 6.3e-149 531.2 363 76.6
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 6.3e-149 531.2 356 77.2
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 4.1e-148 528.5 361 74.8
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.2e-147 526.9 326 80.7
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 2.6e-147 525.8 351 74.9
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 4.5e-147 525.0 364 73.6
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 4.5e-147 525.0 356 74.7
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 2.2e-146 522.7 349 76.5
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 5.0e-146 521.5 355 75.2
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 5.0e-146 521.5 354 72.9
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 6.5e-146 521.2 360 74.2
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 8.5e-146 520.8 374 73.0
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 8.5e-146 520.8 345 76.8
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 2.5e-145 519.2 322 80.7
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.5e-145 519.2 383 71.5
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 2.5e-145 519.2 323 80.8
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 3.2e-145 518.8 371 71.4
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.6e-144 516.5 356 71.3
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.6e-144 516.5 356 71.3
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 2.1e-144 516.2 336 78.3
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 2.7e-144 515.8 346 75.7
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 4.6e-144 515.0 354 74.9
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 6.1e-144 514.6 366 72.7
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 6.1e-144 514.6 365 72.3
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 1.0e-143 513.8 363 71.3
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 1.0e-143 513.8 337 76.9
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 2.3e-143 512.7 334 77.5
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.0e-143 512.3 359 73.3
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.0e-143 512.3 359 73.3
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 6.7e-143 511.1 315 79.4
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.5e-142 510.0 355 73.2
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.5e-142 510.0 346 75.4
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 2.5e-142 509.2 324 79.0
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 3.3e-142 508.8 320 78.8
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 7.4e-142 507.7 353 72.8
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 7.4e-142 507.7 389 68.4
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 1.7e-141 506.5 340 75.3
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 2.2e-141 506.1 354 73.2
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 8.2e-141 504.2 366 71.6
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-140 503.8 365 72.1
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.8e-140 503.1 297 82.5
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 3.1e-140 502.3 356 72.8
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 2.6e-139 499.2 281 87.2
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 4.5e-139 498.4 359 70.2
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 5.9e-139 498.0 347 73.5
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 5.9e-139 498.0 353 72.0
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 5.9e-139 498.0 342 73.7
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 5.9e-139 498.0 341 73.6
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 2.9e-138 495.7 310 78.7
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 5.0e-138 495.0 330 74.5
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 8.5e-138 494.2 338 73.1
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.4e-137 493.4 330 72.7
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 2.5e-137 492.7 341 72.7
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 3.2e-137 492.3 321 77.9
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 1.6e-136 490.0 353 70.8
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.7e-136 488.4 324 75.0
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.7e-136 488.4 324 75.0
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 2.3e-135 486.1 348 70.1
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 5.1e-135 485.0 294 78.6
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 6.7e-135 484.6 295 79.3
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 6.7e-135 484.6 367 68.1
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 6.7e-135 484.6 360 69.4
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 4.8e-133 478.4 308 75.3
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.8e-132 476.5 309 75.1
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 9.1e-132 474.2 327 72.2
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.5e-131 473.4 343 71.1
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.6e-131 472.6 367 66.8
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 1.0e-130 470.7 309 74.8
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.3e-130 470.3 333 72.1
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 2.2e-130 469.5 348 71.0
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 3.2e-129 465.7 342 67.8
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 9.4e-129 464.2 340 70.6
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 1.0e-127 460.7 323 74.0
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 5.2e-127 458.4 338 71.6
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.1e-126 457.2 376 65.4
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.0e-126 456.4 331 71.3
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 2.6e-126 456.1 295 76.9
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 4.4e-126 455.3 297 73.4
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.2e-125 453.0 355 63.9
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.2e-125 453.0 318 69.8
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.2e-123 447.2 355 63.1
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 2.0e-123 446.4 323 70.6
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 4.5e-123 445.3 278 80.2
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 4.5e-123 445.3 338 67.5
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 1.1e-121 440.7 377 63.9
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 3.2e-121 439.1 300 70.3
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 9.4e-121 437.6 398 59.5
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 6.1e-120 434.9 353 67.7
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 6.7e-119 431.4 301 73.8
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 1.5e-118 430.3 311 68.8
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.5e-118 430.3 359 65.5
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 3.7e-117 425.6 376 61.7
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.0e-114 417.5 296 71.6
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 6.5e-114 414.8 317 68.5
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 4.1e-108 395.6 350 60.3
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 5.9e-107 391.7 236 83.1
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 2.3e-106 389.8 294 67.7
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.5e-102 377.1 242 76.4
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 4.4e-102 375.6 244 75.4
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 2.2e-101 373.2 312 62.8
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 8.3e-101 371.3 313 62.3
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.3e-98 364.0 308 60.1
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.7e-90 337.0 229 72.1
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 8.0e-88 328.2 228 69.7
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.4e-84 315.5 242 70.2
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.6e-83 313.9 220 67.3
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 3.3e-81 306.2 351 50.4
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.3e-74 283.5 197 73.6
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 5.6e-73 278.9 262 61.1
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 2.1e-67 260.4 178 76.4
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.9e-60 237.3 167 75.4
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 4.2e-60 236.1 175 64.6
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.6e-38 163.7 126 65.9
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.6e-38 162.2 117 69.2
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.7e-37 161.0 118 66.9
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.5e-36 156.0 125 60.0
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 2.8e-32 143.7 117 70.1
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 6.9e-31 139.0 133 60.2
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 2.0e-30 137.5 293 31.4
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.9e-28 131.0 96 66.7
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 3.2e-28 130.2 79 93.7
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 3.2e-28 130.2 124 62.1
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.6e-27 126.3 70 78.6
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 5.1e-26 122.9 142 49.3
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.8e-23 114.4 88 69.3
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.2e-20 103.6 86 58.1
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 4.2e-20 103.2 86 58.1
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.4e-15 87.4 48 68.8
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.1e-15 87.0 53 66.0
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 4.1e-15 86.7 73 68.5
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 2.6e-14 84.0 52 69.2


User provided reference genes

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