Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G6910 Aethionema arabicum HOM05D003025 ORTHO05D003305 1.8e-213 745.7 398 100.0
Thhalv10004181m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 1.2e-108 397.5 472 57.0
AL5G13600 Arabidopsis lyrata HOM05D003025 ORTHO05D003305 1.5e-106 390.6 473 56.9
Carub.0005s0297 Capsella rubella HOM05D003025 ORTHO05D003305 1.0e-104 384.4 471 56.9
Sp2g14630 Schrenkiella parvula HOM05D003025 ORTHO05D003305 1.4e-101 374.0 465 55.1
AT2G03810 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 2.3e-99 366.7 452 56.2
CARHR146220 Cardamine hirsuta HOM05D003025 ORTHO05D003305 3.6e-97 359.4 438 57.5
BcaC06g31142 Brassica carinata HOM05D003025 ORTHO05D003305 1.5e-90 337.4 432 53.7
BolC7t43953H Brassica oleracea HOM05D003025 ORTHO05D003305 1.4e-85 320.9 432 53.0
BraA06t27196Z Brassica rapa HOM05D003025 ORTHO05D003305 1.9e-82 310.5 426 52.1
BcaC04g21446 Brassica carinata HOM05D003025 ORTHO05D003305 1.1e-77 294.7 422 49.8
BolC9t56021H Brassica oleracea HOM05D003025 ORTHO05D003305 4.2e-77 292.7 428 49.8
BcaB07g30644 Brassica carinata HOM05D003025 ORTHO05D003305 5.8e-71 272.3 423 50.1
THA.LOC104805213 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 1.6e-68 264.2 503 42.1
A06p42840 Brassica napus HOM05D003025 ORTHO05D003305 6.9e-64 248.8 335 53.4
C09p31660 Brassica napus HOM05D003025 ORTHO05D003305 6.9e-64 248.8 345 52.5
A09p24740 Brassica napus HOM05D003025 ORTHO05D003305 1.7e-62 244.2 396 48.5
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 2.3e-59 233.8 494 40.3
THA.LOC104801838 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 5.7e-50 202.6 412 39.8
C02p51790 Brassica napus HOM05D003025 ORTHO05D003305 1.1e-48 198.4 341 46.0
BraA09t38060Z Brassica rapa HOM05D003025 ORTHO05D003305 5.7e-42 176.0 387 38.5
BcaB02g06463 Brassica carinata HOM05D003025 ORTHO05D003305 6.9e-40 169.1 323 41.8
Carub.0001s1338 Capsella rubella HOM05D003025 ORTHO05D003305 6.5e-38 162.5 331 43.5
C05p11460 Brassica napus HOM05D003025 ORTHO05D003305 4.6e-36 156.4 331 39.9
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 3.9e-35 153.3 453 31.6
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.5e-34 150.6 421 35.4
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 4.3e-34 149.8 421 35.6
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.8e-33 147.1 420 35.5
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 2.0e-31 141.0 435 33.6
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 4.5e-31 139.8 421 32.8
BcaC05g25272 Brassica carinata HOM05D003025 ORTHO05D003305 5.9e-31 139.4 327 37.0
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 5.9e-31 139.4 471 31.0
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 7.7e-31 139.0 449 33.4
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 3.8e-30 136.7 441 33.1
Gorai.008G175400 Gossypium raimondii HOM05D003025 ORTHO05D003305 3.8e-30 136.7 395 34.7
Gohir.A12G159500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.9e-29 134.4 393 33.1
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 2.5e-29 134.0 474 30.8
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 3.2e-29 133.7 445 32.1
Gohir.D12G162800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 5.5e-29 132.9 394 34.0
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 3.6e-28 130.2 408 32.1
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 7.9e-28 129.0 377 34.7
TAR374G0527 Trochodendron aralioides HOM05D003025 ORTHO05D003305 8.8e-27 125.6 381 33.6
PGR102G2660 Punica granatum HOM05D003025 ORTHO05D003305 2.0e-26 124.4 419 29.6
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 7.4e-26 122.5 412 35.0
Actinidia19904 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.3e-25 121.7 376 31.9
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 2.2e-25 120.9 429 31.2
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 2.2e-25 120.9 486 28.8
Lj6A773T133 Lonicera japonica HOM05D003025 ORTHO05D003305 2.8e-25 120.6 364 33.8
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 8.2e-25 119.0 390 31.5
arahy.Tifrunner.gnm1.ann1.161SS5 Arachis hypogaea HOM05D003025 ORTHO05D003305 1.4e-24 118.2 337 35.0
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 4.1e-24 116.7 397 31.7
BcaC03g17244 Brassica carinata HOM05D003025 ORTHO05D003305 7.0e-24 115.9 184 46.2
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea HOM05D003025 ORTHO05D003305 3.5e-23 113.6 429 33.1
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 4.5e-23 113.2 400 33.0
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 4.5e-23 113.2 410 30.2
Psat2g085960 Pisum sativum HOM05D003025 ORTHO05D003305 5.9e-23 112.8 338 35.8
VMungo1215G0401 Vigna mungo HOM05D003025 ORTHO05D003305 5.9e-23 112.8 333 35.4
Migut.L01161 Erythranthe guttata HOM05D003025 ORTHO05D003305 1.3e-22 111.7 449 29.4
Rhsim12G0071300 Rhododendron simsii HOM05D003025 ORTHO05D003305 2.2e-22 110.9 347 34.6
TWI79G0747 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 3.8e-22 110.2 470 31.1
Phvul.003G038300 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 5.0e-22 109.8 336 33.3
vmacro01298 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 5.0e-22 109.8 360 32.2
Actinidia07767 Actinidia chinensis HOM05D003025 ORTHO05D003305 8.5e-22 109.0 380 31.8
Glyma.02G122700 Glycine max HOM05D003025 ORTHO05D003305 1.1e-21 108.6 392 30.6
TPR.G38556 Trifolium pratense HOM05D003025 ORTHO05D003305 1.1e-21 108.6 333 34.5
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 4.2e-21 106.7 469 30.5
BraA06t24164Z Brassica rapa HOM05D003025 ORTHO05D003305 1.2e-20 105.1 290 35.9
HanXRQChr12g0365071 Helianthus annuus HOM05D003025 ORTHO05D003305 1.6e-20 104.8 331 32.6
MBI15_g31908_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 1.6e-20 104.8 367 31.9
Sopen05g006590 Solanum pennellii HOM05D003025 ORTHO05D003305 1.6e-20 104.8 374 31.6
VMungo0251G3127 Vigna mungo HOM05D003025 ORTHO05D003305 1.6e-20 104.8 328 30.8
Actinidia31928 Actinidia chinensis HOM05D003025 ORTHO05D003305 2.1e-20 104.4 396 30.3
A06p09750 Brassica napus HOM05D003025 ORTHO05D003305 2.1e-20 104.4 290 36.2
Manes.06G079500 Manihot esculenta HOM05D003025 ORTHO05D003305 2.1e-20 104.4 457 30.4
Ca_05068_v3 Cicer arietinum L. HOM05D003025 ORTHO05D003305 8.0e-20 102.4 336 34.2
PGSC0003DMG400025716 Solanum tuberosum HOM05D003025 ORTHO05D003305 8.0e-20 102.4 391 31.5
vmacro10474 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 8.0e-20 102.4 424 31.1
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 1.0e-19 102.1 495 28.3
DCAR_030058 Daucus carota HOM05D003025 ORTHO05D003305 1.4e-19 101.7 388 30.4
MELO3C011401.2 Cucumis melo HOM05D003025 ORTHO05D003305 1.8e-19 101.3 438 26.9
Medtr5g047930 Medicago truncatula HOM05D003025 ORTHO05D003305 1.8e-19 101.3 332 33.7
Lj3A1027T87 Lonicera japonica HOM05D003025 ORTHO05D003305 3.0e-19 100.5 366 34.2
PGSC0003DMG400001936 Solanum tuberosum HOM05D003025 ORTHO05D003305 3.0e-19 100.5 394 30.2
Peaxi162Scf00188g01025 Petunia axillaris HOM05D003025 ORTHO05D003305 5.2e-19 99.8 415 29.9
Potri.008G111800 Populus trichocarpa HOM05D003025 ORTHO05D003305 5.2e-19 99.8 494 28.7
Sopen04g001270 Solanum pennellii HOM05D003025 ORTHO05D003305 5.2e-19 99.8 394 28.9
HanXRQChr16g0528681 Helianthus annuus HOM05D003025 ORTHO05D003305 8.8e-19 99.0 330 31.8
Sc11g0002650 Simmondsia chinensis HOM05D003025 ORTHO05D003305 1.1e-18 98.6 402 30.6
HanXRQChr17g0568661 Helianthus annuus HOM05D003025 ORTHO05D003305 1.5e-18 98.2 355 33.0
Sc04g0007330 Simmondsia chinensis HOM05D003025 ORTHO05D003305 1.5e-18 98.2 424 25.2
CsaV3_6G033910 Cucumis sativus L. HOM05D003025 ORTHO05D003305 2.0e-18 97.8 450 26.2
GSVIVG01010102001 Vitis vinifera HOM05D003025 ORTHO05D003305 2.0e-18 97.8 345 31.0
CSS0010060 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 2.6e-18 97.4 344 32.0
Thhalv10008913m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 3.3e-18 97.1 216 39.4
CsaV3_5G033470 Cucumis sativus L. HOM05D003025 ORTHO05D003305 4.4e-18 96.7 427 27.9
Solyc04g005290.3 Solanum lycopersicum HOM05D003025 ORTHO05D003305 4.4e-18 96.7 401 29.2
Lj2g0017874 Lotus japonicus HOM05D003025 ORTHO05D003305 7.5e-18 95.9 329 32.8
PSO063G1603 Papaver somniferum HOM05D003025 ORTHO05D003305 9.7e-18 95.5 405 26.7
Phvul.003G280500 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 9.7e-18 95.5 350 29.4
Lsat_1_v5_gn_8_37061 Lactuca sativa HOM05D003025 ORTHO05D003305 1.7e-17 94.7 364 31.6
Sabra10G0106400 Salix brachista HOM05D003025 ORTHO05D003305 1.7e-17 94.7 513 29.0
PSO782G5508 Papaver somniferum HOM05D003025 ORTHO05D003305 2.8e-17 94.0 352 26.7
Potri.010G138100 Populus trichocarpa HOM05D003025 ORTHO05D003305 2.8e-17 94.0 521 26.1
Glyma.01G064900 Glycine max HOM05D003025 ORTHO05D003305 3.7e-17 93.6 392 29.8
ClCG05G023550 Citrullus lanatus HOM05D003025 ORTHO05D003305 4.8e-17 93.2 403 27.8
ClCG08G010610 Citrullus lanatus HOM05D003025 ORTHO05D003305 8.2e-17 92.4 368 27.2
Sed0016639 Sechium edule HOM05D003025 ORTHO05D003305 1.1e-16 92.0 394 31.0
Sed0001557 Sechium edule HOM05D003025 ORTHO05D003305 9.1e-16 89.0 358 25.7
Oeu062245.1 Olea europaea HOM05D003025 ORTHO05D003305 2.7e-15 87.4 399 29.1
BcaB03g16265 Brassica carinata HOM05D003025 ORTHO05D003305 3.5e-15 87.0 47 83.0
Eucgr.G02421 Eucalyptus grandis HOM05D003025 ORTHO05D003305 3.5e-15 87.0 379 28.0
Oeu003749.3 Olea europaea HOM05D003025 ORTHO05D003305 3.5e-15 87.0 431 28.3
Cpa.g.sc1.169 Carica papaya HOM05D003025 ORTHO05D003305 4.5e-15 86.7 190 38.4
MD13G1056500 Malus domestica HOM05D003025 ORTHO05D003305 4.5e-15 86.7 106 49.1
Oeu024157.1 Olea europaea HOM05D003025 ORTHO05D003305 4.5e-15 86.7 82 56.1
AT1G13650 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 5.9e-15 86.3 210 37.1
EL10Ac6g14672 Beta vulgaris HOM05D003025 ORTHO05D003305 5.9e-15 86.3 493 26.6
Cc11_g11550 Coffea canephora HOM05D003025 ORTHO05D003305 5.9e-15 86.3 406 30.8
Sabra08G0084400 Salix brachista HOM05D003025 ORTHO05D003305 1.0e-14 85.5 450 27.3
Sed0017206 Sechium edule HOM05D003025 ORTHO05D003305 1.0e-14 85.5 476 26.9
Oeu021806.1 Olea europaea HOM05D003025 ORTHO05D003305 2.9e-14 84.0 410 27.6
ECA234G4845 Erigeron canadensis HOM05D003025 ORTHO05D003305 6.5e-14 82.8 314 31.8
Lalb_Chr10g0099151 Lupinus albus HOM05D003025 ORTHO05D003305 6.5e-14 82.8 330 30.9
Prupe.1G293500 Prunus persica HOM05D003025 ORTHO05D003305 6.5e-14 82.8 453 26.0
MD16G1055400 Malus domestica HOM05D003025 ORTHO05D003305 8.5e-14 82.4 88 53.4
C07p34250 Brassica napus HOM05D005208 ORTHO05D006415 1.5e-13 81.6 265 38.9
Os04g0467100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 2.5e-13 80.9 54 68.5
unitig_52.g17161 Utricularia gibba HOM05D003025 ORTHO05D003305 2.5e-13 80.9 203 34.5
MSTRG.781 Avicennia marina HOM05D003025 ORTHO05D003305 5.5e-13 79.7 82 51.2
AUR62007872 Chenopodium quinoa HOM05D003025 ORTHO05D003305 5.5e-13 79.7 519 25.8
MBI14_g31150_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 5.5e-13 79.7 443 29.3
Nitab4.5_0001071g0040 Nicotiana tabacum HOM05D003025 ORTHO05D003305 5.5e-13 79.7 405 27.2
Aqoxy3G03750 Aquilegia oxysepala HOM05D003025 ORTHO05D003305 7.2e-13 79.3 475 27.6
BolC2t11264H Brassica oleracea HOM05D003025 ORTHO05D003305 9.4e-13 79.0 219 37.9
AUR62003057 Chenopodium quinoa HOM05D003025 ORTHO05D003305 2.1e-12 77.8 539 23.6
SGA_v2.0_scaffold16G07826 Striga asiatica HOM05D003025 ORTHO05D003305 2.1e-12 77.8 360 28.9
MSTRG.13475 Avicennia marina HOM05D003025 ORTHO05D003305 2.7e-12 77.4 453 29.1
ATR0691G160 Amborella trichopoda HOM05D003025 ORTHO05D003305 3.6e-12 77.0 377 30.5
SEGI_24332 Sequoiadendron giganteum HOM05D066507 ORTHO05D003305 3.6e-12 77.0 65 66.2
MSTRG.7727 Avicennia marina HOM05D003025 ORTHO05D003305 4.7e-12 76.6 309 30.7
HPP92_018243 Vanilla planifolia HOM05D003025 ORTHO05D003305 4.7e-12 76.6 54 68.5
A02p33640 Brassica napus HOM05D003025 ORTHO05D003305 6.1e-12 76.3 327 29.4
unitig_62.g23701 Utricularia gibba HOM05D003025 ORTHO05D003305 6.1e-12 76.3 181 38.1
Lalb_Chr04g0255461 Lupinus albus HOM05D003025 ORTHO05D003305 8.0e-12 75.9 328 29.0
SGA_v2.0_scaffold59G20657 Striga asiatica HOM05D003025 ORTHO05D003305 1.8e-11 74.7 369 28.7
BraA02t07444Z Brassica rapa HOM05D016957 ORTHO05D024051 2.3e-11 74.3 107 42.1
unitig_22.g5562 Utricularia gibba HOM05D003025 ORTHO05D003305 2.3e-11 74.3 399 28.8
Nitab4.5_0002491g0030 Nicotiana tabacum HOM05D003025 ORTHO05D003305 4.0e-11 73.6 419 25.5
Lalb_Chr17g0341461 Lupinus albus HOM05D003025 ORTHO05D003305 5.2e-11 73.2 364 28.3
Nitab4.5_0009153g0010 Nicotiana tabacum HOM05D003025 ORTHO05D003305 5.2e-11 73.2 398 27.4
PSO017G6048 Papaver somniferum HOM05D003025 ORTHO05D003305 5.2e-11 73.2 351 27.6
Dinv38641 Davidia involucrata HOM05D003025 ORTHO05D003305 6.8e-11 72.8 354 27.7
C04p63350 Brassica napus HOM05D016957 ORTHO05D024051 1.5e-10 71.6 60 60.0
BolC4t27809H Brassica oleracea HOM05D016957 ORTHO05D024051 1.5e-10 71.6 60 60.0
PSO478G4016 Papaver somniferum HOM05D003025 ORTHO05D003305 2.0e-10 71.2 332 27.1
Ah.03g138600 Amaranthus hybridus HOM05D003025 ORTHO05D003305 2.6e-10 70.9 460 25.2
ECA233G1104 Erigeron canadensis HOM05D003025 ORTHO05D003305 3.4e-10 70.5 452 28.5
MD14G1216700 Malus domestica HOM05D003025 ORTHO05D003305 4.4e-10 70.1 82 47.6
Ciclev10031644m.g Citrus clementina HOM05D003025 ORTHO05D003305 7.5e-10 69.3 236 33.5
RcHm_v2.0_Chr7g0183741 Rosa chinensis HOM05D003025 ORTHO05D003305 1.3e-09 68.6 327 26.9
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 2.2e-09 67.8 193 34.7
Prupe.5G210100 Prunus persica HOM05D003025 ORTHO05D003305 2.2e-09 67.8 410 25.4
SGA_v2.0_scaffold287G47189 Striga asiatica HOM05D003025 ORTHO05D003305 6.3e-09 66.2 291 31.3
Haze_11858 Corylus avellana HOM05D003025 ORTHO05D003305 1.1e-08 65.5 400 28.2
HanXRQChr08g0215591 Helianthus annuus HOM05D003025 ORTHO05D003305 1.8e-08 64.7 261 34.1
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 3.1e-08 63.9 198 35.4
C06p04330 Brassica napus HOM05D016957 ORTHO05D024051 4.1e-08 63.5 107 39.3
CDE10G0152 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 4.1e-08 63.5 353 23.5
Zm00001eb245390 Zea mays HOM05D003025 ORTHO05D003305 4.1e-08 63.5 53 60.4
unitig_8.g3969 Utricularia gibba HOM05D003025 ORTHO05D003305 9.1e-08 62.4 260 31.9
RcHm_v2.0_Chr4g0437341 Rosa chinensis HOM05D003025 ORTHO05D003305 2.7e-07 60.8 299 26.8
Cc04_g08270 Coffea canephora HOM05D003025 ORTHO05D003305 3.5e-07 60.5 68 50.0
Duzib205G1035 Durio zibethinus HOM05D003025 ORTHO05D003305 4.5e-07 60.1 333 28.8
Migut.E00253 Erythranthe guttata HOM05D003025 ORTHO05D003305 5.9e-07 59.7 391 26.6
Hma1.2p1_0060F.1_g032730 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 5.9e-07 59.7 119 34.5
CiPaw.16G080200 Carya illinoinensis HOM05D003025 ORTHO05D003305 1.0e-06 58.9 54 55.6
Solyc05g011830.4 Solanum lycopersicum HOM05D003025 ORTHO05D003305 1.7e-06 58.2 100 36.0
Ciclev10021731m.g Citrus clementina HOM05D003025 ORTHO05D003305 2.9e-06 57.4 310 26.8
Lsat_1_v5_gn_3_105000 Lactuca sativa HOM05D003025 ORTHO05D003305 2.9e-06 57.4 313 26.8
HPP92_015551 Vanilla planifolia HOM05D003025 ORTHO05D003305 2.9e-06 57.4 381 26.2
Zm00001eb080280 Zea mays HOM05D041475 ORTHO05D003305 2.9e-06 57.4 223 34.1
AL1G25440 Arabidopsis lyrata HOM05D003025 ORTHO05D003305 3.8e-06 57.0 163 36.8
CDE10G0686 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 5.0e-06 56.6 337 27.6
HanXRQChr15g0475601 Helianthus annuus HOM05D003025 ORTHO05D003305 5.0e-06 56.6 416 26.0
MD06G1205800 Malus domestica HOM05D003025 ORTHO05D003305 6.5e-06 56.2 398 25.4
Peaxi162Scf00026g00314 Petunia axillaris HOM05D003025 ORTHO05D003305 6.5e-06 56.2 538 24.0
Hund09959 Selenicereus undatus HOM05D003025 ORTHO05D003305 6.5e-06 56.2 191 30.9
QL10p020762 Quercus lobata HOM05D011573 ORTHO05D003305 8.5e-06 55.8 347 24.2


User provided reference genes

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