Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G5700 Aethionema arabicum HOM05D008305 ORTHO05D002833 2.0e-109 399.1 190 100.0
Aa31LG11G5250 Aethionema arabicum HOM05D013273 ORTHO05D002833 1.3e-15 87.4 138 35.5
THA.LOC104816435 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.5e-13 80.5 95 42.1
THA.LOC104816438 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 2.5e-11 73.2 95 38.9
CARHR208940 Cardamine hirsuta HOM05D003012 ORTHO05D002833 3.2e-11 72.8 98 36.7
Migut.C00426 Erythranthe guttata HOM05D000256 ORTHO05D000119 3.2e-11 72.8 98 34.7
Migut.C00638 Erythranthe guttata HOM05D000256 ORTHO05D000119 3.2e-11 72.8 98 34.7
Migut.C00642 Erythranthe guttata HOM05D000256 ORTHO05D000119 3.2e-11 72.8 98 34.7
Sed0022747 Sechium edule HOM05D000256 ORTHO05D000119 1.2e-10 70.9 219 26.0
AT5G04347 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 2.1e-10 70.1 98 32.7
AL6G13980 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 2.7e-10 69.7 98 31.6
BcaNung05795 Brassica carinata HOM05D003012 ORTHO05D002833 1.0e-09 67.8 94 38.3
Phvul.010G083600 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 1.4e-09 67.4 91 33.0
SalBow2G0067 Salvia bowleyana HOM05D005430 ORTHO05D000119 1.8e-09 67.0 97 35.1
CARHR147970 Cardamine hirsuta HOM05D008305 ORTHO05D002833 2.3e-09 66.6 92 33.7
BcaB01g05892 Brassica carinata HOM05D003012 ORTHO05D002833 3.9e-09 65.9 94 35.1
A03p01630 Brassica napus HOM05D003012 ORTHO05D002833 3.9e-09 65.9 94 35.1
C03p01980 Brassica napus HOM05D003012 ORTHO05D002833 3.9e-09 65.9 94 35.1
BolC3t12752H Brassica oleracea HOM05D003012 ORTHO05D002833 3.9e-09 65.9 94 35.1
BraA03t09538Z Brassica rapa HOM05D003012 ORTHO05D002833 3.9e-09 65.9 94 35.1
Thhalv10005094m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 3.9e-09 65.9 103 34.0
VMungo0331G1740 Vigna mungo HOM05D000256 ORTHO05D000119 3.9e-09 65.9 91 31.9
AL5G15850 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 6.7e-09 65.1 82 35.4
BcaB08g37417 Brassica carinata HOM05D003012 ORTHO05D002833 6.7e-09 65.1 94 33.0
BcaB08g37418 Brassica carinata HOM05D003012 ORTHO05D002833 8.8e-09 64.7 95 32.6
RcHm_v2.0_Chr3g0448331 Rosa chinensis HOM05D000256 ORTHO05D000119 8.8e-09 64.7 98 33.7
Sed0000193 Sechium edule HOM05D000256 ORTHO05D000119 8.8e-09 64.7 113 31.9
SalBow4G2587 Salvia bowleyana HOM05D000256 ORTHO05D000119 1.1e-08 64.3 95 33.7
Aa31LG3G3070 Aethionema arabicum HOM05D004904 ORTHO05D002833 1.5e-08 63.9 185 29.2
Prupe.8G208600 Prunus persica HOM05D000256 ORTHO05D000119 1.5e-08 63.9 97 35.1
AL5G17120 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 2.0e-08 63.5 97 37.1
CARHR012100 Cardamine hirsuta HOM05D008305 ORTHO05D002833 2.0e-08 63.5 94 29.8
AT3G26880 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 2.6e-08 63.2 92 33.7
BcaC09g48088 Brassica carinata HOM05D003012 ORTHO05D002833 3.3e-08 62.8 81 38.3
A03p01640 Brassica napus HOM05D000149 ORTHO05D000076 3.3e-08 62.8 92 34.8
A09p64370 Brassica napus HOM05D003012 ORTHO05D002833 3.3e-08 62.8 93 32.3
BolC1t05395H Brassica oleracea HOM05D003012 ORTHO05D002833 3.3e-08 62.8 81 38.3
BraA03t09539Z Brassica rapa HOM05D000149 ORTHO05D000076 3.3e-08 62.8 92 34.8
BraA09t41781Z Brassica rapa HOM05D003012 ORTHO05D002833 3.3e-08 62.8 93 32.3
SalBow7G2914 Salvia bowleyana HOM05D000256 ORTHO05D000119 3.3e-08 62.8 93 34.4
Solyc03g025660.1 Solanum lycopersicum HOM05D000256 ORTHO05D000119 3.3e-08 62.8 97 35.1
AT5G04350 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 4.4e-08 62.4 88 39.8
Migut.C00637 Erythranthe guttata HOM05D000256 ORTHO05D000119 4.4e-08 62.4 95 32.6
Migut.F01974 Erythranthe guttata HOM05D000256 ORTHO05D000119 4.4e-08 62.4 94 36.2
Glyma.01G141600 Glycine max HOM05D000256 ORTHO05D000119 4.4e-08 62.4 91 29.7
SalBow4G1538 Salvia bowleyana HOM05D000256 ORTHO05D000119 4.4e-08 62.4 90 33.3
SalBow4G3236 Salvia bowleyana HOM05D000256 ORTHO05D000119 4.4e-08 62.4 90 33.3
BcaB01g05894 Brassica carinata HOM05D000149 ORTHO05D000076 5.7e-08 62.0 92 34.8
C03p02010 Brassica napus HOM05D003012 ORTHO05D002833 5.7e-08 62.0 92 34.8
BolC3t12754H Brassica oleracea HOM05D000149 ORTHO05D000076 5.7e-08 62.0 92 34.8
Cpa.g.sc169.24 Carica papaya HOM05D000256 ORTHO05D000119 5.7e-08 62.0 91 33.0
Migut.F01972 Erythranthe guttata HOM05D000256 ORTHO05D000119 5.7e-08 62.0 93 32.3
SalBow4G0962 Salvia bowleyana HOM05D000256 ORTHO05D000119 5.7e-08 62.0 90 33.3
Aa31LG2G14660 Aethionema arabicum HOM05D000256 ORTHO05D000119 7.4e-08 61.6 123 32.5
Carub.0007s3550 Capsella rubella HOM05D008305 ORTHO05D010625 7.4e-08 61.6 102 35.3
Thhalv10015919m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 9.7e-08 61.2 92 32.6
AT1G28305 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 1.3e-07 60.8 94 30.9
Peaxi162Scf00047g01539 Petunia axillaris HOM05D000256 ORTHO05D000119 1.3e-07 60.8 118 31.4
THA.LOC104816675 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.3e-07 60.8 85 34.1
AT3G27680 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 1.7e-07 60.5 99 34.3
C07p26380 Brassica napus HOM05D004904 ORTHO05D002833 1.7e-07 60.5 98 35.7
BolC7t43165H Brassica oleracea HOM05D004904 ORTHO05D002833 1.7e-07 60.5 98 35.7
Thhalv10002162m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 1.7e-07 60.5 96 32.3
Aa31LG3G3260 Aethionema arabicum HOM05D003012 ORTHO05D002833 2.2e-07 60.1 136 26.5
CsaV3_5G013340 Cucumis sativus L. HOM05D000256 ORTHO05D000119 2.2e-07 60.1 135 28.1
Glyma.01G142000 Glycine max HOM05D000256 ORTHO05D000119 2.2e-07 60.1 91 29.7
Solyc09g011100.1 Solanum lycopersicum HOM05D000256 ORTHO05D000119 2.2e-07 60.1 104 31.7
BcaB06g25801 Brassica carinata HOM05D000256 ORTHO05D000119 2.8e-07 59.7 78 34.6
Migut.C00641 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.8e-07 59.7 95 32.6
BcaC05g28829 Brassica carinata HOM05D000256 ORTHO05D000119 3.7e-07 59.3 78 34.6
BolC5t33677H Brassica oleracea HOM05D014510 ORTHO05D000119 3.7e-07 59.3 78 34.6
Carub.0006s0330 Capsella rubella HOM05D003012 ORTHO05D002833 3.7e-07 59.3 84 36.9
Glyma.01G141200 Glycine max HOM05D000256 ORTHO05D000119 3.7e-07 59.3 56 39.3
ATR0693G139 Amborella trichopoda HOM05D000256 ORTHO05D000119 4.8e-07 58.9 59 44.1
AL1G41880 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 4.8e-07 58.9 94 30.9
Carub.0003s0970 Capsella rubella HOM05D003012 ORTHO05D002833 4.8e-07 58.9 94 30.9
Cfa002535 Carpinus fangiana HOM05D000256 ORTHO05D000119 4.8e-07 58.9 87 28.7
Duzib211G0476 Durio zibethinus HOM05D000256 ORTHO05D000119 4.8e-07 58.9 89 33.7
Migut.G01032 Erythranthe guttata HOM05D000256 ORTHO05D000119 4.8e-07 58.9 79 36.7
Hma1.2p1_1359F.1_g278050 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 4.8e-07 58.9 96 28.1
Manes.03G171700 Manihot esculenta HOM05D000256 ORTHO05D000119 4.8e-07 58.9 99 28.3
Nitab4.5_0000401g0130 Nicotiana tabacum HOM05D000256 ORTHO05D000119 4.8e-07 58.9 111 33.3
TAR362G1185 Trochodendron aralioides HOM05D000256 ORTHO05D000119 4.8e-07 58.9 52 38.5
MELO3C003589.2 Cucumis melo HOM05D000256 ORTHO05D000119 6.3e-07 58.5 100 29.0
Carub.0007s3551 Capsella rubella HOM05D008305 ORTHO05D010625 8.2e-07 58.2 97 32.0
CARHR147940 Cardamine hirsuta HOM05D008305 ORTHO05D010625 8.2e-07 58.2 101 32.7
ClCG07G001680 Citrullus lanatus HOM05D000256 ORTHO05D000119 8.2e-07 58.2 79 27.8
Migut.N00479 Erythranthe guttata HOM05D000256 ORTHO05D000119 8.2e-07 58.2 81 30.9
FAN14G0909 Fragaria x ananassa HOM05D000256 ORTHO05D000119 8.2e-07 58.2 162 26.5
Manes.04G148500 Manihot esculenta HOM05D000256 ORTHO05D000119 8.2e-07 58.2 101 29.7
Oeu031136.1 Olea europaea HOM05D000256 ORTHO05D000119 8.2e-07 58.2 93 32.3
Aqoxy3G02151 Aquilegia oxysepala HOM05D000256 ORTHO05D000119 1.1e-06 57.8 103 29.1
Carub.0007s3746 Capsella rubella HOM05D003012 ORTHO05D002833 1.1e-06 57.8 92 34.8
Migut.N00387 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.1e-06 57.8 92 28.3
Gohir.D08G211466 Gossypium hirsutum HOM05D000256 ORTHO05D000119 1.1e-06 57.8 94 27.7
RcHm_v2.0_Chr4g0396541 Rosa chinensis HOM05D000256 ORTHO05D000119 1.1e-06 57.8 98 33.7
SGA_v2.0_scaffold1G00732 Striga asiatica HOM05D000256 ORTHO05D000119 1.1e-06 57.8 96 30.2
SGA_v2.0_scaffold2G01374 Striga asiatica HOM05D000256 ORTHO05D000119 1.1e-06 57.8 98 34.7
AL3G21850 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 1.4e-06 57.4 91 25.3
CARHR147950 Cardamine hirsuta HOM05D008305 ORTHO05D010625 1.4e-06 57.4 84 32.1
COL.COLO4_34096 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.4e-06 57.4 97 34.0
CsaV3_3G047360 Cucumis sativus L. HOM05D000256 ORTHO05D000119 1.4e-06 57.4 89 30.3
Glyma.01G141800 Glycine max HOM05D000256 ORTHO05D000119 1.4e-06 57.4 56 37.5
Gorai.004G224700 Gossypium raimondii HOM05D000256 ORTHO05D000119 1.4e-06 57.4 94 27.7
Medtr8g094890 Medicago truncatula HOM05D000256 ORTHO05D000119 1.4e-06 57.4 97 28.9
Medtr8g094915 Medicago truncatula HOM05D000256 ORTHO05D000119 1.4e-06 57.4 97 28.9
SalBow4G1365 Salvia bowleyana HOM05D000256 ORTHO05D000119 1.4e-06 57.4 85 31.8
SGA_v2.0_scaffold91G28096 Striga asiatica HOM05D019630 ORTHO05D000119 1.4e-06 57.4 80 35.0
MSTRG.3399 Avicennia marina HOM05D000256 ORTHO05D000119 1.8e-06 57.0 95 34.7
CARHR092330 Cardamine hirsuta HOM05D000256 ORTHO05D000119 1.8e-06 57.0 61 42.6
Cpa.g.sc8.195 Carica papaya HOM05D000256 ORTHO05D000119 1.8e-06 57.0 85 34.1
Migut.G00698 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.8e-06 57.0 80 33.8
FvH4_2g20680 Fragaria vesca HOM05D000256 ORTHO05D000119 1.8e-06 57.0 47 48.9
Glyma.01G141300 Glycine max HOM05D000256 ORTHO05D000119 1.8e-06 57.0 91 27.5
Hma1.2p1_0170F.1_g075380 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 1.8e-06 57.0 98 33.7
Lalb_Chr05g0219511 Lupinus albus HOM05D000256 ORTHO05D000119 1.8e-06 57.0 99 28.3
Aa31LG2G5710 Aethionema arabicum HOM05D008305 ORTHO05D010625 2.4e-06 56.6 112 35.7
AT1G11765 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 2.4e-06 56.6 81 29.6
Migut.F01971 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.4e-06 56.6 80 31.2
Gohir.A08G193464 Gossypium hirsutum HOM05D000256 ORTHO05D000119 2.4e-06 56.6 91 28.6
Hma1.2p1_0146F.1_g065590 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.4e-06 56.6 98 30.6
Oeu009572.1 Olea europaea HOM05D000256 ORTHO05D000119 2.4e-06 56.6 94 28.7
RhsimUnG0181400 Rhododendron simsii HOM05D000256 ORTHO05D000119 2.4e-06 56.6 85 35.3
SalBow1G3274 Salvia bowleyana HOM05D000256 ORTHO05D000119 2.4e-06 56.6 90 32.2
THA.LOC104816678 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 2.4e-06 56.6 80 35.0
Thecc.04G213100 Theobroma cacao HOM05D005430 ORTHO05D007814 2.4e-06 56.6 82 35.4
AL1G22950 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 3.1e-06 56.2 81 32.1
BcaB07g31553 Brassica carinata HOM05D000256 ORTHO05D000119 3.1e-06 56.2 73 35.6
CAN.G884.1 Capsicum annuum HOM05D000256 ORTHO05D000119 3.1e-06 56.2 88 31.8
DCAR_002287 Daucus carota HOM05D000256 ORTHO05D000119 3.1e-06 56.2 92 31.5
Migut.G00604 Erythranthe guttata HOM05D005430 ORTHO05D007814 3.1e-06 56.2 78 33.3
Gohir.A08G193448 Gossypium hirsutum HOM05D000256 ORTHO05D000119 3.1e-06 56.2 91 28.6
SalBow7G0504 Salvia bowleyana HOM05D000256 ORTHO05D000119 3.1e-06 56.2 76 34.2
SalBow7G1990 Salvia bowleyana HOM05D000256 ORTHO05D000119 3.1e-06 56.2 76 34.2
PGSC0003DMG400014348 Solanum tuberosum HOM05D000256 ORTHO05D000119 3.1e-06 56.2 103 27.2
PGSC0003DMG400038419 Solanum tuberosum HOM05D000256 ORTHO05D000119 3.1e-06 56.2 82 30.5
AT3G10460 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 4.1e-06 55.8 91 26.4
A01p41800 Brassica napus HOM05D003012 ORTHO05D002833 4.1e-06 55.8 59 40.7
Haze_27699 Corylus avellana HOM05D000256 ORTHO05D000119 4.1e-06 55.8 89 30.3
Sopen05g031960 Solanum pennellii HOM05D000256 ORTHO05D000119 4.1e-06 55.8 99 31.3
Thecc.01G232100 Theobroma cacao HOM05D000256 ORTHO05D000119 4.1e-06 55.8 91 30.8
BcaC06g33884 Brassica carinata HOM05D008305 ORTHO05D010625 5.3e-06 55.5 80 37.5
BcaNung05794 Brassica carinata HOM05D000149 ORTHO05D000076 5.3e-06 55.5 89 33.7
C07p35910 Brassica napus HOM05D008305 ORTHO05D010625 5.3e-06 55.5 80 37.5
BolC7t44108H Brassica oleracea HOM05D008305 ORTHO05D010625 5.3e-06 55.5 80 37.5
Carub.0005s0612 Capsella rubella HOM05D008305 ORTHO05D010625 5.3e-06 55.5 81 32.1
Cpa.g.sc59.85 Carica papaya HOM05D005430 ORTHO05D007814 5.3e-06 55.5 92 35.9
COL.COLO4_05734 Corchorus olitorius HOM05D005430 ORTHO05D007814 5.3e-06 55.5 103 31.1
COL.COLO4_11200 Corchorus olitorius HOM05D000256 ORTHO05D000119 5.3e-06 55.5 98 28.6
CsaV3_3G047370 Cucumis sativus L. HOM05D000256 ORTHO05D000119 5.3e-06 55.5 100 27.0
Gohir.A08G193432 Gossypium hirsutum HOM05D000256 ORTHO05D000119 5.3e-06 55.5 60 31.7
MD05G1182000 Malus domestica HOM05D000256 ORTHO05D000119 5.3e-06 55.5 81 30.9
RcHm_v2.0_Chr3g0448291 Rosa chinensis HOM05D000256 ORTHO05D000119 5.3e-06 55.5 92 29.3
SGA_v2.0_scaffold57G20177 Striga asiatica HOM05D005430 ORTHO05D000119 5.3e-06 55.5 51 39.2
C07p35940 Brassica napus HOM05D008305 ORTHO05D010625 7.0e-06 55.1 85 35.3
Hma1.2p1_2329F.1_g320010 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 7.0e-06 55.1 98 33.7
MD10G1085700 Malus domestica HOM05D000256 ORTHO05D000119 7.0e-06 55.1 100 27.0
MD13G1110700 Malus domestica HOM05D000256 ORTHO05D000119 7.0e-06 55.1 93 26.9
Peaxi162Scf00045g00732 Petunia axillaris HOM05D000256 ORTHO05D000119 7.0e-06 55.1 83 31.3
Peaxi162Scf00047g01629 Petunia axillaris HOM05D000075 ORTHO05D000073 7.0e-06 55.1 78 35.9
QL11p023894 Quercus lobata HOM05D005430 ORTHO05D007814 7.0e-06 55.1 91 36.3
Sed0009184 Sechium edule HOM05D000256 ORTHO05D000119 7.0e-06 55.1 101 28.7
Sed0015985 Sechium edule HOM05D000256 ORTHO05D000119 7.0e-06 55.1 90 26.7
SGA_v2.0_scaffold625G53240 Striga asiatica HOM05D000256 ORTHO05D000119 7.0e-06 55.1 126 30.2
C04p67000 Brassica napus HOM05D003012 ORTHO05D002833 9.1e-06 54.7 88 38.6
Carub.0003s0968 Capsella rubella HOM05D003012 ORTHO05D002833 9.1e-06 54.7 78 34.6
ClCG07G006080 Citrullus lanatus HOM05D000256 ORTHO05D000119 9.1e-06 54.7 86 32.6
CsaV3_6G051250 Cucumis sativus L. HOM05D000256 ORTHO05D000119 9.1e-06 54.7 100 26.0
Migut.G01034 Erythranthe guttata HOM05D000256 ORTHO05D000119 9.1e-06 54.7 58 41.4
Gohir.A11G198542 Gossypium hirsutum HOM05D000256 ORTHO05D000119 9.1e-06 54.7 101 29.7
Gorai.007G244400 Gossypium raimondii HOM05D000256 ORTHO05D000119 9.1e-06 54.7 101 29.7
Lj2g0009295 Lotus japonicus HOM05D000256 ORTHO05D000119 9.1e-06 54.7 91 31.9
Nn6g33519 Nelumbo nucifera HOM05D000256 ORTHO05D000119 9.1e-06 54.7 83 27.7
Prupe.1G057300 Prunus persica HOM05D000256 ORTHO05D000119 9.1e-06 54.7 54 42.6
VMungo1383G0495 Vigna mungo HOM05D000256 ORTHO05D000119 9.1e-06 54.7 59 44.1


User provided reference genes

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