Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 2287.7 1163 100.0
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1830.8 1117 84.3
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1828.5 1121 83.5
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1828.5 1121 83.5
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1824.7 1118 83.4
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1821.6 1122 82.9
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1820.4 1118 83.3
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1816.6 1125 82.7
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1807.7 1117 82.9
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1801.2 1120 82.9
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1781.9 1121 82.2
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1779.2 1118 82.1
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1755.3 1117 80.8
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1750.7 1121 81.1
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1740.3 1121 80.6
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1733.4 1121 80.6
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1704.5 1127 78.7
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1675.6 1119 76.0
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1331.2 1135 60.9
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1330.5 1138 61.9
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1330.1 1122 61.9
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1311.6 1122 61.3
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1308.5 1130 60.9
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1305.8 1135 60.4
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1298.5 1135 60.4
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1293.1 1139 59.3
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1288.5 1131 60.9
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1285.8 1110 61.2
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1283.1 1194 57.0
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1271.5 1148 58.5
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1268.4 1127 59.8
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1268.1 1146 59.5
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1266.1 1127 59.8
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1261.1 1135 60.0
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1260.4 1136 58.6
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1250.7 1082 61.2
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1238.8 1139 57.9
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1235.3 1143 57.0
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1234.2 1139 57.3
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1234.2 1131 57.7
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1234.2 1139 56.9
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1233.4 1122 58.3
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1229.9 1122 57.9
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1229.2 1127 57.5
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1229.2 1144 56.5
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1228.4 1138 57.0
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1223.0 1135 57.8
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1221.1 1133 57.2
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1220.7 1138 56.8
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1220.7 1138 56.9
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1220.3 1119 56.7
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1220.3 1137 57.3
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1219.9 1138 56.9
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1219.9 1149 57.4
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1216.1 1119 57.2
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1215.3 1120 57.1
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1210.7 1134 56.2
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1210.7 1149 56.7
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1206.0 1128 56.3
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1205.3 1138 56.3
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1204.5 1129 56.9
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1203.7 1204 54.8
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1203.3 1110 57.7
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1202.6 1136 56.4
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1202.2 1127 57.1
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1198.3 1128 56.4
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1197.6 1135 56.1
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1194.1 1131 56.6
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1191.4 1134 55.9
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1185.2 1135 55.5
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1184.1 1135 55.4
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1180.2 1122 56.1
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1177.5 1160 55.8
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1175.2 1114 56.4
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1172.9 1145 54.1
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1172.5 1139 55.7
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1170.6 1116 56.7
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1168.7 1122 55.3
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1167.5 1132 54.4
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1152.9 1134 54.3
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1152.9 1115 54.4
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1151.0 1138 54.0
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1149.8 1214 52.2
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1148.3 1137 54.0
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1144.8 934 62.6
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1144.4 1125 54.6
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1143.6 1131 53.8
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1135.9 1115 55.3
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1120.9 1113 53.8
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1114.0 1177 50.6
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1113.2 970 60.9
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1099.3 1020 58.6
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1094.0 1132 52.4
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1085.5 1184 50.8
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1081.6 1015 57.4
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1080.5 1132 51.2
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 8.0e-312 1073.9 1053 53.9
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 2.3e-309 1065.8 967 58.7
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 1.6e-307 1059.7 1175 50.5
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.2e-305 1053.5 962 59.3
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 6.4e-304 1047.7 809 65.5
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 3.0e-301 1038.9 858 61.5
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 1.4e-298 1030.0 977 56.0
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 2.3e-293 1012.7 1110 51.0
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.2e-281 973.8 1118 49.8
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 3.6e-278 962.2 775 63.1
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.5e-273 946.8 885 56.9
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 1.0e-272 944.1 1144 47.2
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.2e-254 884.0 1037 48.9
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.4e-250 870.5 1137 44.4
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.8e-242 843.6 662 64.8
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 5.8e-236 822.0 1168 42.7
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 7.8e-233 811.6 1037 44.9
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 3.3e-231 806.2 799 54.2
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 3.0e-224 783.1 1100 41.7
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 5.1e-208 729.2 823 49.0
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.2e-180 638.3 984 41.1
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 3.8e-147 526.9 1118 34.0
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 2.8e-134 484.2 466 54.7
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 8.3e-134 482.6 420 59.3
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.9e-132 476.5 537 50.1
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 6.8e-128 463.0 1130 32.0
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 7.3e-114 416.4 317 62.8
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 4.0e-96 357.5 336 53.9
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 1.2e-92 345.9 1206 26.3
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 1.0e-83 316.2 248 71.4
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 1.3e-83 315.8 248 71.0
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 9.0e-80 303.1 248 70.2
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.3e-77 293.1 229 64.6
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.4e-72 279.3 522 35.6
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 7.1e-61 240.4 261 51.3
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.7e-59 233.8 253 53.0
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.5e-53 215.3 401 37.4
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.1e-52 212.2 207 55.6
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.3e-51 208.8 221 52.5
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.7e-49 201.4 369 36.6
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.1e-44 185.7 175 56.0
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.1e-44 185.7 175 56.0
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.1e-44 185.7 175 56.0
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 7.9e-44 183.7 175 55.4
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.8e-43 182.6 175 55.4
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 6.3e-41 174.1 231 46.8
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.3e-38 166.4 238 42.4
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 6.1e-36 157.5 360 32.5
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-33 149.8 175 49.1
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 3.2e-29 135.2 175 44.6
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 4.7e-28 131.3 143 51.0
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.5e-21 109.8 435 26.9
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 4.7e-20 104.8 93 61.3
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.3e-19 102.4 240 31.2
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.8e-19 100.9 79 60.8
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 5.4e-16 91.3 58 65.5
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 9.1e-16 90.5 306 28.8
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 2.7e-15 89.0 126 43.7
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 1.9e-13 82.8 76 56.6
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 2.3e-11 75.9 55 67.3
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.4e-08 64.7 72 47.2


User provided reference genes

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