Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 1.0e-143 513.5 266 100.0
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 1.5e-102 376.7 266 75.2
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 5.7e-99 364.8 266 72.9
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 2.0e-96 356.3 267 71.5
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 1.3e-95 353.6 266 71.8
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 3.0e-95 352.4 266 72.9
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 3.9e-95 352.1 267 71.9
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 9.5e-94 347.4 268 70.1
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 9.5e-94 347.4 268 70.1
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 2.1e-93 346.3 266 69.9
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 2.1e-93 346.3 266 69.9
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 3.6e-93 345.5 268 69.8
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 4.0e-92 342.0 245 74.7
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 9.9e-75 284.3 292 55.8
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.2e-72 277.3 269 57.2
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 2.1e-72 276.6 268 56.0
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.3e-71 273.9 270 55.9
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.3e-71 273.1 266 56.4
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 5.1e-71 271.9 271 56.1
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 6.6e-71 271.6 270 55.6
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 8.6e-71 271.2 259 59.8
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 1.1e-70 270.8 285 54.0
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 1.1e-70 270.8 268 56.0
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.1e-70 270.8 269 56.1
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.9e-70 270.0 259 56.4
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 7.3e-70 268.1 269 56.9
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.2e-69 267.3 271 56.1
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.6e-69 266.9 267 56.9
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.6e-69 266.9 259 56.4
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 3.6e-69 265.8 259 59.5
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 4.7e-69 265.4 269 54.6
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 8.1e-69 264.6 270 55.6
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.8e-68 263.5 273 55.3
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.8e-68 263.5 259 57.9
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 3.1e-68 262.7 258 56.6
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 5.2e-68 261.9 276 53.3
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 6.9e-68 261.5 271 55.0
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 6.9e-68 261.5 231 59.3
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 9.0e-68 261.2 269 53.5
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.2e-67 260.8 268 55.2
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 5.8e-67 258.5 269 55.4
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 7.6e-67 258.1 268 54.9
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 7.6e-67 258.1 237 57.4
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 7.6e-67 258.1 270 53.7
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 7.6e-67 258.1 259 55.6
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 9.9e-67 257.7 235 57.9
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 9.9e-67 257.7 259 55.6
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 2.2e-66 256.5 270 55.2
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.2e-66 256.5 248 57.7
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 2.2e-66 256.5 262 55.7
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 2.9e-66 256.1 257 56.4
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 2.9e-66 256.1 270 55.2
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 3.8e-66 255.8 237 57.8
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 4.9e-66 255.4 263 54.4
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 6.4e-66 255.0 271 54.2
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 8.4e-66 254.6 237 59.1
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 1.4e-65 253.8 252 55.6
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.4e-65 253.8 275 54.2
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 1.9e-65 253.4 239 59.0
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.9e-65 253.4 278 53.2
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.4e-65 253.1 269 53.2
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 2.4e-65 253.1 262 56.9
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 4.2e-65 252.3 269 55.4
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 4.2e-65 252.3 263 55.9
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.2e-65 252.3 260 56.5
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 4.2e-65 252.3 262 55.0
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 7.1e-65 251.5 278 52.9
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 9.3e-65 251.1 272 52.9
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 1.2e-64 250.8 259 54.8
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.6e-64 250.4 275 53.5
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.6e-64 250.4 249 56.2
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 2.1e-64 250.0 275 52.0
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 2.1e-64 250.0 268 52.6
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 2.7e-64 249.6 256 54.7
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 6.0e-64 248.4 292 49.0
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 6.0e-64 248.4 231 58.0
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.8e-64 248.1 259 54.8
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 1.0e-63 247.7 266 52.6
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.3e-63 247.3 259 54.4
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.7e-63 246.9 268 52.2
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 2.3e-63 246.5 275 52.0
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 2.3e-63 246.5 264 51.1
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 3.9e-63 245.7 258 53.9
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 5.1e-63 245.4 259 52.1
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 8.7e-63 244.6 264 51.1
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 8.7e-63 244.6 268 50.4
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.5e-62 243.8 259 54.4
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 7.3e-62 241.5 263 53.2
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.1e-61 240.0 260 54.2
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 2.8e-61 239.6 241 54.8
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.8e-61 239.6 260 54.2
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 3.6e-61 239.2 269 51.3
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 4.8e-61 238.8 231 57.1
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.1e-61 238.0 260 53.5
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.4e-60 236.5 245 56.7
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 3.1e-60 236.1 258 53.9
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 3.1e-60 236.1 239 55.2
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 4.0e-60 235.7 201 63.7
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 9.0e-60 234.6 263 53.2
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 3.4e-59 232.6 258 51.9
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 3.4e-59 232.6 237 53.2
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 5.8e-59 231.9 269 51.3
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 1.3e-58 230.7 240 55.8
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.3e-58 230.7 246 54.1
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 8.4e-58 228.0 237 55.3
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 1.4e-57 227.3 257 51.0
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 1.4e-57 227.3 242 52.1
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 9.3e-57 224.6 291 47.8
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 4.6e-56 222.2 202 59.4
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.8e-55 220.3 203 60.1
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 2.3e-55 219.9 272 48.9
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 6.7e-55 218.4 239 52.7
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 4.3e-54 215.7 262 47.7
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 5.6e-54 215.3 262 47.7
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 2.1e-53 213.4 168 66.1
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 2.2e-50 203.4 214 51.9
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 4.9e-50 202.2 241 48.5
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 1.1e-49 201.1 179 59.2
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 9.3e-49 198.0 170 62.9
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 3.5e-48 196.1 267 48.7
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.3e-47 194.1 240 45.8
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 6.7e-47 191.8 242 45.5
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.5e-46 190.7 237 49.4
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 1.3e-45 187.6 234 46.2
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 5.3e-44 182.2 170 54.1
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 1.5e-43 180.6 239 46.4
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 1.0e-42 177.9 151 59.6
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 1.8e-39 167.2 252 40.1
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 3.0e-39 166.4 133 63.9
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 2.5e-38 163.3 245 47.3
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 2.5e-38 163.3 175 51.4
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 1.3e-37 161.0 135 60.0
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 4.2e-33 146.0 177 52.5
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 4.2e-33 146.0 202 46.0
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 2.1e-32 143.7 127 63.0
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.4e-31 141.0 255 38.4
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 4.3e-30 136.0 135 56.3
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 4.3e-30 136.0 135 56.3
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 4.3e-30 136.0 135 56.3
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 6.3e-29 132.1 259 35.5
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.5e-27 127.5 229 38.4
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.0e-26 124.8 153 46.4
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 5.5e-25 119.0 104 60.6
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 7.2e-25 118.6 89 64.0
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.0e-23 114.8 157 44.6
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 3.9e-23 112.8 146 47.3
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.1e-22 111.3 157 44.6
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.7e-18 97.4 124 44.4
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 2.3e-15 87.0 274 31.8
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 6.7e-15 85.5 100 45.0
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 4.4e-14 82.8 106 49.1
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 7.4e-14 82.0 218 33.0
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 1.4e-12 77.8 59 61.0
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 2.9e-10 70.1 57 66.7
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 3.2e-09 66.6 36 83.3
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 6.7e-07 58.9 72 47.2
SMO361G0571 Selaginella moellendorffii HOM05D018282 ORTHO05D005223 8.8e-07 58.5 57 61.4


User provided reference genes

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