Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 2.9e-148 528.5 260 100.0
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 2.7e-125 452.2 259 82.6
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 3.5e-125 451.8 259 82.6
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 1.7e-124 449.5 260 80.8
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 8.6e-124 447.2 259 80.3
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 8.6e-124 447.2 258 80.6
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 3.3e-123 445.3 258 80.2
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 9.8e-120 433.7 259 79.2
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 9.8e-120 433.7 259 79.2
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 1.7e-119 433.0 256 79.3
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 2.9e-119 432.2 259 78.8
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 3.3e-115 418.7 259 76.1
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 9.5e-115 417.2 257 76.3
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.2e-114 416.8 259 76.4
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.4e-113 413.3 259 76.4
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 1.8e-113 412.9 259 74.9
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 3.8e-111 405.2 253 74.3
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 6.4e-111 404.4 253 74.3
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 1.4e-110 403.3 253 74.7
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 1.6e-109 399.8 253 73.9
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 4.9e-103 378.3 256 67.2
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 1.1e-102 377.1 249 67.9
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 7.8e-101 370.9 256 65.6
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 1.7e-100 369.8 254 66.5
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 5.1e-100 368.2 253 66.8
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 8.7e-100 367.5 276 67.0
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 5.6e-99 364.8 259 65.3
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 1.6e-98 363.2 256 67.6
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 4.8e-98 361.7 252 63.5
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 8.1e-98 360.9 260 65.4
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 2.4e-97 359.4 257 66.5
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 2.4e-97 359.4 255 65.1
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 4.0e-97 358.6 256 65.2
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 4.0e-97 358.6 253 64.4
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 5.3e-97 358.2 255 64.7
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 9.0e-97 357.5 250 63.6
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 1.5e-96 356.7 250 63.2
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 2.6e-96 355.9 270 63.3
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 3.4e-96 355.5 249 65.1
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 3.4e-96 355.5 257 65.8
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 4.5e-96 355.1 250 62.8
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 9.9e-96 354.0 255 67.5
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 4.9e-95 351.7 254 63.8
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 1.4e-94 350.1 258 67.1
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 1.4e-94 350.1 256 62.5
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 1.4e-94 350.1 254 63.8
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 2.4e-94 349.4 244 62.3
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 4.2e-94 348.6 244 62.7
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 5.4e-94 348.2 246 65.0
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 7.1e-94 347.8 255 62.0
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 2.7e-93 345.9 243 65.4
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 6.0e-93 344.7 243 66.3
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 7.9e-93 344.4 254 62.6
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 1.3e-92 343.6 254 63.0
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 1.8e-92 343.2 257 61.1
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 3.9e-92 342.0 243 63.0
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 6.7e-92 341.3 254 62.6
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 6.7e-92 341.3 258 60.1
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 1.1e-91 340.5 189 83.6
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 1.1e-91 340.5 273 61.5
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 1.1e-91 340.5 243 63.4
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 2.5e-91 339.3 254 62.6
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 3.3e-91 339.0 250 62.0
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 5.6e-91 338.2 254 61.4
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 7.4e-91 337.8 252 61.1
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 9.6e-91 337.4 240 62.5
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.1e-90 336.3 258 61.2
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 2.1e-90 336.3 254 61.0
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 2.8e-90 335.9 257 61.5
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.8e-90 335.9 243 62.6
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.8e-90 335.1 258 60.5
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 8.1e-90 334.3 258 60.9
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 1.1e-89 334.0 256 61.3
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 1.8e-89 333.2 258 59.3
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 1.8e-89 333.2 254 59.1
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 3.1e-89 332.4 250 60.0
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 4.0e-89 332.0 258 60.9
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 6.9e-89 331.3 253 61.7
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 1.2e-88 330.5 240 60.8
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 2.0e-88 329.7 230 65.2
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 1.3e-87 327.0 240 61.7
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 2.9e-87 325.9 255 58.0
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 3.8e-87 325.5 248 61.3
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 3.8e-87 325.5 233 63.5
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 4.9e-87 325.1 257 57.6
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 4.9e-87 325.1 248 60.5
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 4.9e-87 325.1 248 60.5
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 6.4e-87 324.7 248 60.1
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.1e-86 323.9 248 60.1
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 1.1e-86 323.9 255 57.6
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 1.4e-86 323.6 249 59.8
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 5.5e-86 321.6 267 58.4
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 7.1e-86 321.2 248 60.1
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 9.3e-86 320.9 254 58.7
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 1.2e-85 320.5 254 59.1
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.6e-85 320.1 255 63.1
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 1.6e-85 320.1 291 54.3
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 3.5e-85 318.9 254 58.3
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 4.6e-85 318.5 254 57.1
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 4.6e-85 318.5 283 53.7
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 6.0e-85 318.2 247 59.5
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 6.0e-85 318.2 247 59.5
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 1.8e-84 316.6 247 57.5
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 8.7e-84 314.3 260 56.9
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 3.3e-83 312.4 304 51.0
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 3.3e-83 312.4 253 58.1
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 5.6e-83 311.6 244 57.4
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 1.4e-81 307.0 252 56.3
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 1.4e-81 307.0 224 63.4
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 1.7e-79 300.1 245 58.4
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 4.2e-78 295.4 246 54.1
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 7.9e-77 291.2 217 60.8
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 1.3e-74 283.9 248 54.4
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 1.1e-70 270.8 188 66.0
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 7.2e-70 268.1 201 59.7
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 7.2e-70 268.1 169 71.6
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 9.3e-70 267.7 199 60.8
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 3.6e-69 265.8 199 60.3
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.8e-68 263.5 228 51.8
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 1.5e-67 260.4 257 51.4
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 3.1e-65 252.7 242 52.1
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 5.9e-64 248.4 222 50.0
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 7.7e-64 248.1 201 56.2
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 1.8e-57 226.9 177 56.5
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 2.6e-56 223.0 197 51.8
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 4.2e-54 215.7 168 57.1
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 6.1e-53 211.8 247 45.7
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 3.0e-52 209.5 129 71.3
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 2.2e-50 203.4 192 50.5
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 7.7e-48 194.9 238 43.3
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 3.8e-47 192.6 255 42.0
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 4.2e-46 189.1 139 62.6
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 2.0e-43 180.3 144 58.3
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 2.6e-43 179.9 126 65.1
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 1.3e-42 177.6 290 35.2
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 6.3e-42 175.3 138 58.0
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 1.4e-41 174.1 133 58.6
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 8.5e-39 164.9 279 35.8
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.1e-37 160.2 107 70.1
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 2.1e-37 160.2 195 45.6
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 1.2e-32 144.4 114 55.3
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 3.8e-23 112.8 104 51.0
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 2.1e-21 107.1 79 60.8
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 1.2e-19 101.3 81 61.7
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 1.3e-18 97.8 65 63.1
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 1.7e-18 97.4 60 75.0
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 2.5e-06 57.0 184 27.2


User provided reference genes

Program Settings