Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 2.3e-299 1031.6 551 100.0
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 3.2e-176 622.5 556 63.3
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 8.1e-164 581.3 493 64.9
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 4.0e-139 499.2 563 55.1
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 3.0e-134 483.0 625 52.3
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 9.0e-131 471.5 558 56.6
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 7.6e-130 468.4 562 52.3
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 5.5e-120 435.6 559 56.5
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 1.2e-119 434.5 562 56.2
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 9.7e-117 424.9 555 51.7
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 9.7e-117 424.9 622 49.7
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 4.8e-116 422.5 555 51.4
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 4.8e-116 422.5 555 51.4
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 1.4e-115 421.0 560 52.5
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 5.0e-113 412.5 556 51.3
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 4.2e-112 409.5 560 50.5
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 1.2e-106 391.3 555 46.5
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 5.9e-106 389.0 554 49.3
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 5.9e-106 389.0 554 49.3
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 2.3e-81 307.4 554 42.6
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 1.2e-74 285.0 553 41.4
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 1.2e-74 285.0 553 41.4
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 1.3e-68 265.0 301 52.8
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 1.4e-67 261.5 553 43.4
Sp7g02650 Schrenkiella parvula HOM05D005710 ORTHO05D004657 1.1e-51 208.8 320 47.8
BcaC06g33686 Brassica carinata HOM05D005710 ORTHO05D004657 7.1e-51 206.1 402 40.8
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 7.1e-51 206.1 573 34.7
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 8.7e-41 172.6 573 31.6
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 1.4e-38 165.2 368 36.7
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 4.0e-38 163.7 532 30.1
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 1.1e-35 155.6 360 36.7
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 1.1e-35 155.6 420 31.9
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 5.4e-35 153.3 389 33.7
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 9.3e-35 152.5 449 33.2
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.6e-34 151.8 380 33.4
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 2.7e-34 151.0 399 33.1
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 1.0e-33 149.1 357 36.1
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 5.1e-33 146.7 354 36.2
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 1.5e-32 145.2 394 35.3
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 1.9e-32 144.8 337 34.4
Manes.02G052100 Manihot esculenta HOM05D005710 ORTHO05D004657 5.6e-32 143.3 381 35.2
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 5.6e-32 143.3 345 33.9
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 2.1e-31 141.4 358 34.1
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 3.7e-31 140.6 297 37.4
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.8e-30 138.3 513 28.5
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.8e-30 138.3 381 34.1
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 1.8e-30 138.3 412 33.5
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 1.2e-29 135.6 309 36.6
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 2.0e-29 134.8 314 34.7
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 1.3e-28 132.1 405 34.6
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 1.7e-28 131.7 293 36.2
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 2.9e-28 131.0 456 30.9
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 3.8e-28 130.6 453 30.9
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 4.9e-28 130.2 400 33.8
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 8.4e-28 129.4 350 34.6
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.1e-27 129.0 363 33.1
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 2.4e-27 127.9 276 37.0
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 5.5e-27 126.7 330 34.2
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 5.5e-27 126.7 351 32.2
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 7.1e-27 126.3 288 35.4
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 1.2e-26 125.6 324 33.3
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 1.6e-26 125.2 353 32.3
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 2.1e-26 124.8 287 35.5
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 2.1e-26 124.8 294 37.1
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 4.6e-26 123.6 318 34.6
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 7.9e-26 122.9 264 35.2
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 1.0e-25 122.5 273 36.3
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 1.3e-25 122.1 264 39.4
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 1.3e-25 122.1 394 32.0
BcaC06g30873 Brassica carinata HOM05D005710 ORTHO05D004657 2.3e-25 121.3 156 49.4
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 3.9e-25 120.6 449 33.4
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 5.1e-25 120.2 288 37.8
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 5.1e-25 120.2 251 37.5
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 6.7e-25 119.8 285 36.1
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 6.7e-25 119.8 447 32.2
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 8.7e-25 119.4 295 35.6
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 4.3e-24 117.1 379 31.4
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 5.6e-24 116.7 298 32.2
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 7.4e-24 116.3 381 33.1
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 1.6e-23 115.2 294 34.7
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 2.1e-23 114.8 319 33.5
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 2.8e-23 114.4 241 34.9
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 3.7e-23 114.0 311 32.2
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 4.8e-23 113.6 364 29.7
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 6.2e-23 113.2 345 33.0
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 8.2e-23 112.8 301 34.2
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 1.4e-22 112.1 452 30.8
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 3.1e-22 110.9 350 31.1
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 3.1e-22 110.9 278 35.6
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 5.3e-22 110.2 339 32.4
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 6.9e-22 109.8 110 56.4
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 1.5e-21 108.6 282 34.4
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 1.5e-21 108.6 139 47.5
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 2.0e-21 108.2 406 28.8
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 7.6e-21 106.3 215 34.9
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 1.7e-20 105.1 182 40.7
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 2.9e-20 104.4 222 35.6
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 2.9e-20 104.4 408 30.9
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 1.1e-19 102.4 499 27.1
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 1.1e-19 102.4 271 32.1
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 1.4e-19 102.1 284 32.4
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 4.2e-19 100.5 248 35.1
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 2.1e-18 98.2 279 32.3
CAN.G206.210 Capsicum annuum HOM05D005710 ORTHO05D004657 3.5e-18 97.4 278 32.7
A07p19920 Brassica napus HOM05D005710 ORTHO05D004657 4.6e-18 97.1 196 43.4
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 4.6e-18 97.1 244 34.4
SGA_v2.0_scaffold4G02406 Striga asiatica HOM05D005710 ORTHO05D004657 1.3e-17 95.5 192 38.0
Haze_14462 Corylus avellana HOM05D005710 ORTHO05D004657 5.1e-17 93.6 373 31.1
Hma1.2p1_1813F.1_g303710 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 8.7e-17 92.8 250 33.6
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 2.0e-13 81.6 317 28.1
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 2.6e-13 81.3 107 43.9
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 5.9e-13 80.1 173 37.0
Haze_14452 Corylus avellana HOM05D005710 ORTHO05D004657 7.7e-13 79.7 86 52.3
Peaxi162Scf00166g00643 Petunia axillaris HOM05D005710 ORTHO05D004657 2.9e-12 77.8 203 34.5
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 5.0e-12 77.0 82 52.4
BolC7t44342H Brassica oleracea HOM05D005710 ORTHO05D004657 9.4e-11 72.8 129 38.0
HPP92_019480 Vanilla planifolia HOM05D005710 ORTHO05D004657 2.7e-10 71.2 94 42.6
AL3G48400 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 1.8e-09 68.6 56 57.1
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 5.1e-09 67.0 132 37.1
Aa31LG1G27630 Aethionema arabicum HOM05D006269 ORTHO05D001487 1.4e-06 58.9 111 36.0
Carub.0004s2894 Capsella rubella HOM05D006269 ORTHO05D001487 1.4e-06 58.9 244 23.4
Cc02_g38780 Coffea canephora HOM05D006269 ORTHO05D001487 5.3e-06 57.0 117 32.5


User provided reference genes

Program Settings