Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 4.4e-293 1010.7 574 100.0
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 5.5e-219 764.6 585 73.5
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 3.2e-211 738.8 583 75.3
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 1.5e-197 693.3 585 70.4
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 4.5e-197 691.8 586 71.3
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 4.5e-197 691.8 585 70.4
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 3.3e-192 675.6 602 67.6
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 7.4e-192 674.5 602 67.6
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 9.4e-187 657.5 582 69.8
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 2.1e-186 656.4 582 69.6
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 2.1e-186 656.4 582 69.6
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 8.8e-185 651.0 588 67.5
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 1.3e-180 637.1 485 73.8
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 3.2e-142 509.6 504 61.3
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 4.3e-139 499.2 574 54.5
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 4.7e-138 495.7 591 56.0
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 4.4e-136 489.2 585 54.2
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 1.3e-135 487.6 524 55.5
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 1.7e-135 487.3 594 54.2
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 1.9e-134 483.8 607 51.7
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 1.9e-134 483.8 582 55.0
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 2.4e-134 483.4 527 56.9
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 1.2e-133 481.1 590 53.4
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 2.1e-133 480.3 526 56.5
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 3.0e-132 476.5 584 53.8
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 3.9e-132 476.1 582 52.4
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 1.5e-131 474.2 581 53.4
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 7.3e-131 471.9 526 55.9
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 1.6e-130 470.7 592 52.7
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 3.6e-130 469.5 590 51.0
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 6.8e-129 465.3 577 53.4
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 2.6e-128 463.4 577 51.5
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 3.4e-128 463.0 595 51.6
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 5.8e-128 462.2 577 53.6
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 5.8e-128 462.2 466 59.7
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 8.4e-127 458.4 486 57.6
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 7.1e-126 455.3 592 51.2
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 6.0e-125 452.2 594 52.2
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 6.0e-125 452.2 586 51.4
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 6.6e-124 448.7 591 51.4
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 1.1e-123 448.0 381 67.5
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 7.3e-123 445.3 604 49.5
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 7.3e-123 445.3 483 54.9
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 7.3e-123 445.3 484 55.6
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.1e-122 443.7 486 56.2
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.3e-121 439.1 604 49.8
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 6.9e-121 438.7 491 56.0
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 9.0e-121 438.3 482 56.6
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 9.3e-118 428.3 637 48.2
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 7.9e-117 425.2 646 48.6
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 2.3e-116 423.7 578 52.1
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 3.9e-116 422.9 542 52.2
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 8.7e-116 421.8 522 52.1
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 4.3e-115 419.5 482 54.4
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 4.3e-115 419.5 480 55.0
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 9.6e-115 418.3 601 48.4
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.1e-114 417.2 618 49.7
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 2.0e-112 410.6 478 53.8
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 2.6e-112 410.2 539 49.7
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 7.6e-112 408.7 666 47.0
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 9.9e-112 408.3 483 53.0
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 2.2e-111 407.1 482 53.3
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 2.2e-111 407.1 605 48.8
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 2.2e-111 407.1 475 53.7
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 3.2e-110 403.3 467 54.0
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 4.2e-110 402.9 595 47.1
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 5.5e-110 402.5 590 47.8
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 6.0e-109 399.1 647 47.9
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 5.1e-108 396.0 584 49.8
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 5.1e-108 396.0 583 48.7
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 1.5e-107 394.4 585 49.6
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 3.7e-106 389.8 489 52.6
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 8.1e-106 388.7 484 52.1
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 3.1e-105 386.7 579 50.4
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 4.0e-105 386.3 583 48.0
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 2.0e-104 384.0 539 51.2
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 3.4e-104 383.3 539 51.2
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 4.9e-103 379.4 572 45.5
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 8.4e-103 378.6 524 49.0
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 1.9e-102 377.5 577 48.0
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 5.5e-102 375.9 579 48.9
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 2.3e-100 370.5 512 48.2
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 1.1e-99 368.2 521 48.8
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 4.3e-99 366.3 624 46.3
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 5.7e-99 365.9 579 46.6
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 1.6e-98 364.4 566 44.3
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 2.4e-97 360.5 361 59.8
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 4.1e-97 359.8 480 49.4
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 7.6e-96 355.5 542 47.6
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 1.3e-95 354.8 645 41.9
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 4.2e-94 349.7 539 45.8
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 5.5e-94 349.4 587 42.8
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 5.9e-88 329.3 401 51.4
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 7.2e-86 322.4 490 47.1
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 1.3e-79 301.6 241 66.8
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 3.2e-78 297.0 612 37.3
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.1e-77 294.3 284 58.5
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 7.4e-75 285.8 607 38.1
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 3.1e-73 280.4 363 51.5
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 9.1e-73 278.9 358 52.0
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.2e-69 268.5 301 53.8
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 2.7e-69 267.3 307 54.7
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 1.6e-64 251.5 401 41.9
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 9.4e-62 242.3 249 55.8
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 1.2e-61 241.9 239 57.3
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 4.7e-53 213.4 343 47.5
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 1.2e-45 188.7 460 34.6
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 2.3e-44 184.5 233 51.1
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 1.5e-43 181.8 222 53.6
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 2.9e-42 177.6 342 42.4
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 4.9e-42 176.8 244 45.9
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 1.4e-41 175.3 227 52.4
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 7.8e-40 169.5 221 51.6
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 5.0e-39 166.8 173 57.8
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 1.5e-35 155.2 142 58.5
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 6.4e-34 149.8 238 47.1
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 5.0e-31 140.2 129 57.4
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 2.1e-29 134.8 164 51.8
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 7.5e-27 126.3 173 46.2
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 1.7e-23 115.2 70 85.7
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 5.1e-23 113.6 65 89.2
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 2.3e-20 104.8 356 27.2
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 9.6e-14 82.8 169 39.6
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.9e-10 71.2 156 39.7
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 6.4e-10 70.1 124 41.9
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 7.1e-09 66.6 101 42.6
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 6.6e-07 60.1 39 71.8


User provided reference genes

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