Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.1e-112 410.2 236 100.0
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 1.2e-92 343.6 236 83.9
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 1.2e-92 343.6 236 83.9
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 3.5e-92 342.0 236 83.5
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 1.8e-91 339.7 236 83.1
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 2.3e-91 339.3 236 83.1
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 2.3e-91 339.3 236 82.2
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 2.3e-91 339.3 237 85.7
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 8.7e-91 337.4 236 87.3
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 2.5e-90 335.9 237 82.7
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 4.3e-90 335.1 236 81.8
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 6.2e-89 331.3 238 82.4
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.4e-88 330.1 236 80.9
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 5.3e-80 301.6 241 71.4
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.1e-77 293.9 239 73.2
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.5e-74 283.5 236 71.2
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 2.0e-74 283.1 237 69.6
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.3e-74 282.0 238 70.2
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.7e-73 280.0 240 70.0
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 1.8e-72 276.6 239 69.0
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 2.0e-71 273.1 239 70.3
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 4.5e-71 271.9 232 71.6
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 7.7e-71 271.2 259 65.6
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.9e-69 266.5 236 67.4
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.2e-69 265.4 242 63.2
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 4.2e-69 265.4 237 68.4
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 5.5e-69 265.0 237 68.4
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.2e-68 263.8 241 66.4
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 3.6e-68 262.3 237 70.9
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 3.6e-68 262.3 240 67.5
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.4e-67 260.4 236 63.1
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 3.9e-67 258.8 236 63.1
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 6.7e-67 258.1 239 61.9
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 6.7e-67 258.1 236 67.4
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 8.8e-67 257.7 240 66.7
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.1e-66 257.3 237 68.8
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.1e-66 257.3 237 68.8
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.1e-66 257.3 236 67.4
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 1.5e-66 256.9 238 66.8
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 2.6e-66 256.1 236 66.1
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 1.3e-65 253.8 230 67.4
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 1.3e-65 253.8 242 65.7
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 1.1e-64 250.8 185 77.3
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.4e-64 250.4 240 65.0
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.8e-64 250.0 240 65.0
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.8e-64 250.0 278 60.1
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 4.1e-64 248.8 238 59.7
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 7.0e-64 248.1 239 66.1
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 9.1e-64 247.7 242 63.2
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.2e-63 247.3 233 66.1
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.6e-63 246.1 183 69.9
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.6e-63 246.1 183 69.9
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 3.5e-63 245.7 247 60.7
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 4.5e-63 245.4 244 58.2
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 5.9e-63 245.0 233 65.2
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 5.9e-63 245.0 237 65.0
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 5.9e-63 245.0 168 81.0
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 7.7e-63 244.6 233 65.7
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.0e-62 244.2 187 71.7
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.3e-62 243.8 183 77.6
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.3e-62 243.8 247 58.3
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 8.5e-62 241.1 246 57.7
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.5e-61 240.4 199 70.9
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.5e-61 239.6 255 54.9
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 2.5e-61 239.6 220 68.2
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 3.2e-61 239.2 182 79.7
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 3.2e-61 239.2 238 60.5
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 4.2e-61 238.8 237 59.1
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 5.5e-61 238.4 236 63.6
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 7.2e-61 238.0 237 58.6
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 7.2e-61 238.0 236 57.6
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.2e-60 237.3 251 57.4
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.6e-60 236.9 239 61.9
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 2.1e-60 236.5 234 64.5
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.7e-60 236.1 241 58.9
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 8.0e-60 234.6 237 61.6
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.0e-59 234.2 242 57.0
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.4e-59 233.8 229 56.3
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.8e-59 233.4 237 57.0
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 2.3e-59 233.0 213 60.1
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 5.2e-59 231.9 229 59.0
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 1.1e-58 230.7 239 58.2
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 2.6e-58 229.6 222 61.3
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 2.6e-58 229.6 196 67.9
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 4.4e-58 228.8 186 72.0
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 9.7e-58 227.6 244 54.1
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.7e-57 226.9 178 74.7
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.8e-57 226.1 237 60.3
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.8e-57 226.1 237 60.3
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.1e-56 224.2 278 51.4
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 3.1e-56 222.6 244 54.1
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.6e-55 219.5 197 60.4
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 3.5e-55 219.2 140 81.4
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 3.5e-55 219.2 184 64.1
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 3.5e-55 219.2 202 60.9
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 1.3e-54 217.2 253 59.3
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.7e-54 216.9 173 69.4
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.7e-54 216.9 182 74.2
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 6.5e-54 214.9 248 51.6
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 9.4e-53 211.1 187 63.6
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.0e-51 207.6 225 54.7
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 2.6e-50 203.0 196 55.6
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.8e-48 196.8 236 56.4
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.2e-46 189.9 313 42.8
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.8e-46 189.1 168 60.7
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 8.0e-44 181.4 193 53.9
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 2.0e-42 176.8 189 51.3
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 7.5e-42 174.9 181 54.7
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 3.8e-38 162.5 137 60.6
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.3e-37 159.1 129 65.1
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 9.5e-37 157.9 125 74.4
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 4.0e-35 152.5 143 56.6
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 6.8e-35 151.8 330 41.5
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.8e-35 151.8 98 76.5
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.6e-34 149.8 98 75.5
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 5.7e-34 148.7 95 76.8
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.7e-33 146.0 148 55.4
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.1e-28 130.2 100 63.0
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.6e-26 123.2 73 79.5
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 5.8e-26 122.1 201 38.8
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.9e-24 117.1 122 48.4
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 2.0e-23 113.6 100 56.0
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 1.0e-22 111.3 153 45.1
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 3.0e-22 109.8 140 48.6
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 1.1e-21 107.8 79 63.3
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.1e-21 107.8 239 35.1
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 2.5e-21 106.7 239 34.3
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 4.3e-21 105.9 220 36.4
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.8e-20 103.2 239 32.6
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 4.7e-20 102.4 97 69.1
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.1e-19 101.3 152 45.4
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 8.3e-17 91.7 65 72.3
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 6.0e-15 85.5 94 45.7
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 9.5e-13 78.2 162 34.0
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 4.4e-10 69.3 51 70.6
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.3e-09 67.8 108 40.7
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.7e-09 67.4 119 40.3
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 8.4e-09 65.1 196 30.6
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 3.2e-08 63.2 119 36.1
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 6.0e-07 58.9 97 43.3


User provided reference genes

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