Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 4218.3 2259 100.0
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 3448.3 2192 83.5
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 3417.5 2161 84.3
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 3398.2 2168 82.8
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 3397.1 2183 83.1
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 3382.4 2170 83.3
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 3382.4 2169 83.3
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 3370.1 2169 83.1
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 3368.2 2168 83.0
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 3367.4 2183 82.3
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 3061.9 2177 74.6
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2583.9 2208 63.4
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2559.3 2203 63.1
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2559.3 2189 63.2
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2550.0 2201 63.1
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2549.2 2143 64.1
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2545.0 2196 62.7
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2532.7 2095 64.8
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2526.1 2154 63.7
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2522.3 2018 65.9
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2517.7 2209 61.7
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2514.2 2106 63.7
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2504.6 2183 62.7
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2483.0 2202 61.6
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2480.3 2143 63.2
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2478.7 2121 64.1
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2460.6 2193 61.1
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2453.7 2172 61.6
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2444.8 2073 63.7
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2434.4 2100 63.4
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2417.5 1897 67.6
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2385.5 2175 60.0
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2383.6 2207 60.4
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2374.0 2140 60.7
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2341.2 2197 58.9
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2338.9 2222 58.4
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2338.9 2182 59.0
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2332.4 2184 59.0
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2318.9 2184 58.4
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2310.8 2190 58.2
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2309.6 2181 58.5
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2309.3 2202 59.3
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2304.6 2151 59.5
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2298.5 2164 58.5
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2295.8 2070 60.5
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2295.8 2191 57.4
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2293.8 2058 60.3
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2291.9 2145 58.7
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2278.4 2062 60.5
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2265.7 2190 57.2
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2256.5 2218 56.7
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2248.0 2189 58.0
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 2247.6 2104 59.6
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2238.4 2079 59.5
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2234.9 2088 58.6
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2234.9 2088 58.6
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2219.9 2478 53.5
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2210.6 2235 55.1
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2203.3 1629 70.0
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2174.8 2200 56.2
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2174.1 2146 57.7
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 2172.9 2103 58.3
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2169.0 2222 55.7
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2162.5 2368 53.6
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2122.1 2183 56.7
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2093.2 1973 58.8
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2087.8 2186 54.1
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2063.1 1449 73.2
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 1989.2 2145 54.1
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 1987.6 1940 57.1
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 1986.1 2213 51.7
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 1964.9 2185 53.6
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1858.2 3045 41.1
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1839.7 2136 49.5
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1814.3 2160 49.6
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1699.5 1702 56.5
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1643.2 1997 48.0
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1637.9 1653 55.7
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1611.7 1747 52.9
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1592.0 1129 72.5
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1570.4 1674 53.3
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1507.3 2254 41.4
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1420.2 2172 41.5
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 0.0e+00 1410.2 833 88.8
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1323.5 1347 54.4
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1303.9 2072 40.9
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1236.1 2009 39.8
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 0.0e+00 1204.1 1019 67.4
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1184.1 2051 38.1
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1183.3 1572 44.9
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1181.4 918 66.8
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1106.7 2138 35.6
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1100.9 1030 57.7
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 1.1e-304 1051.2 1466 45.8
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 4.1e-278 963.0 837 60.1
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 8.2e-271 938.7 1062 52.8
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 4.0e-241 840.1 1223 43.0
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 1.1e-214 752.3 1048 44.9
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 3.1e-201 707.6 1007 44.3
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 1.3e-199 702.2 723 53.7
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 4.3e-195 687.2 957 45.7
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 2.7e-189 667.9 838 49.0
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 2.0e-184 651.7 578 60.4
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.0e-180 637.9 442 74.7
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 2.7e-173 614.8 484 65.5
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 6.7e-164 583.6 386 75.4
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 2.2e-154 552.0 432 67.6
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 1.1e-153 549.7 373 74.0
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 9.1e-129 466.8 403 59.6
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 2.5e-118 432.2 811 38.2
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.5e-107 396.4 292 69.5
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 6.4e-106 391.0 264 75.4
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 1.5e-99 369.8 362 58.8
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.1e-97 363.6 798 33.1
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 3.0e-95 355.5 1541 25.8
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 7.5e-91 340.9 293 59.7
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 2.4e-84 319.3 502 41.0
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 6.0e-80 304.7 287 58.5
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 6.9e-76 291.2 1778 23.1
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 5.8e-67 261.5 580 33.6
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 2.2e-66 259.6 423 41.4
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 4.9e-66 258.5 312 49.7
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 3.5e-64 252.3 160 80.0
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.1e-56 226.5 152 73.7
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.6e-56 225.3 168 70.8
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 2.9e-50 206.1 180 64.4
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 2.9e-50 206.1 180 64.4
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 2.9e-50 206.1 180 64.4
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 2.9e-50 206.1 180 64.4
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 5.5e-49 201.8 153 68.6
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 3.9e-47 195.7 125 82.4
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.8e-42 179.1 118 78.8
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 2.5e-41 176.4 347 37.5
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 2.5e-38 166.4 129 69.0
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 3.3e-38 166.0 146 64.4
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.1e-30 141.0 365 31.0
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 9.7e-30 137.9 617 24.3
CARHR059590 Cardamine hirsuta HOM05D003845 ORTHO05D004161 8.2e-29 134.8 250 48.8
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.8e-28 133.7 196 39.3
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 1.1e-25 124.4 116 61.2
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 2.7e-24 119.8 508 28.7
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 5.2e-23 115.5 110 54.5
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.6e-22 113.2 70 78.6
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 9.7e-22 111.3 598 24.2
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 1.1e-20 107.8 80 67.5
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 9.1e-20 104.8 75 72.0
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 2.6e-19 103.2 75 70.7
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 8.5e-18 98.2 275 36.0
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 2.3e-15 90.1 147 38.8
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 3.0e-15 89.7 94 56.4
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 5.2e-15 89.0 53 81.1
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.6e-14 86.7 53 75.5
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 2.6e-14 86.7 113 43.4
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.7e-14 85.5 100 52.0
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 1.7e-13 84.0 56 73.2
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.8e-13 83.2 54 75.9
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 2.8e-13 83.2 70 62.9
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 2.8e-13 83.2 56 76.8
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 6.3e-13 82.0 61 57.4
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 1.1e-12 81.3 53 75.5
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 1.4e-12 80.9 54 63.0
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 4.1e-12 79.3 53 77.4
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 7.0e-12 78.6 56 69.6
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.6e-11 77.4 62 61.3
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 1.6e-11 77.4 67 59.7
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 3.5e-11 76.3 66 59.1
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.0e-10 74.7 42 85.7
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 3.2e-09 69.7 115 37.4
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 2.1e-08 67.0 44 79.5
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 2.7e-08 66.6 51 64.7
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 8.0e-08 65.1 50 66.0
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 1.0e-07 64.7 53 62.3
Lsat_1_v5_gn_7_94541 Lactuca sativa HOM05D003845 ORTHO05D004161 3.0e-07 63.2 43 72.1
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 5.2e-07 62.4 47 53.2
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 8.8e-07 61.6 37 78.4
Mapoly0010s0133 Marchantia polymorpha HOM05D003845 ORTHO05D004161 2.6e-06 60.1 109 34.9


User provided reference genes

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